Wall clock time and date at job start Mon Mar 30 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.57676 * 2 1 4 4 C 1.53178 * 109.52292 * 239.84106 * 2 1 3 5 5 C 1.53176 * 109.03919 * 183.11045 * 4 2 1 6 6 C 1.53095 * 109.16064 * 56.98640 * 5 4 2 7 7 H 1.08995 * 109.48271 * 62.37223 * 6 5 4 8 8 C 1.52997 * 109.48313 * 182.40804 * 6 5 4 9 9 N 1.46895 * 109.47373 * 180.23044 * 8 6 5 10 10 C 1.47906 * 110.99829 * 175.81341 * 9 8 6 11 11 C 1.53997 * 107.05802 * 214.15504 * 10 9 8 12 12 C 1.54601 * 105.13804 * 1.22727 * 11 10 9 13 13 H 1.08993 * 110.72229 * 263.41534 * 12 11 10 14 14 C 1.50696 * 110.72115 * 140.31223 * 12 11 10 15 15 H 1.08003 * 120.00220 * 241.45250 * 14 12 11 16 16 C 1.37884 * 120.00032 * 61.45478 * 14 12 11 17 17 N 1.31518 * 119.99980 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 119.99997 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47526 * 89.99925 * 18 16 14 20 20 H 1.48504 * 109.47085 * 210.00107 * 18 16 14 21 21 H 1.48497 * 109.47540 * 329.99798 * 18 16 14 22 22 C 1.48534 * 110.99723 * 58.42077 * 9 8 6 23 23 O 1.42902 * 109.41121 * 302.38661 * 6 5 4 24 24 C 1.42903 * 114.09910 * 61.16409 * 23 6 5 25 25 H 1.09003 * 109.47039 * 299.83771 * 1 2 3 26 26 H 1.08996 * 109.47460 * 59.84281 * 1 2 3 27 27 H 1.09007 * 109.47002 * 179.84676 * 1 2 3 28 28 H 1.08996 * 109.47067 * 180.15928 * 3 2 1 29 29 H 1.09005 * 109.46628 * 300.15940 * 3 2 1 30 30 H 1.09000 * 109.47141 * 60.15590 * 3 2 1 31 31 H 1.09001 * 109.54335 * 302.98492 * 4 2 1 32 32 H 1.08998 * 109.54040 * 63.24239 * 4 2 1 33 33 H 1.08996 * 109.52725 * 297.08103 * 5 4 2 34 34 H 1.09000 * 109.52045 * 176.88444 * 5 4 2 35 35 H 1.08998 * 109.47066 * 300.23640 * 8 6 5 36 36 H 1.09003 * 109.47235 * 60.22820 * 8 6 5 37 37 H 1.08995 * 109.92051 * 333.50851 * 10 9 8 38 38 H 1.08998 * 109.91554 * 94.60807 * 10 9 8 39 39 H 1.09001 * 110.30772 * 120.14163 * 11 10 9 40 40 H 1.08996 * 110.30826 * 242.21344 * 11 10 9 41 41 H 0.96996 * 119.99951 * 180.02562 * 17 16 14 42 42 H 1.08995 * 110.66304 * 278.15041 * 22 9 8 43 43 H 1.08998 * 110.66943 * 41.28574 * 22 9 8 44 44 H 1.09000 * 109.48645 * 178.85485 * 24 23 6 45 45 H 1.08997 * 109.49385 * 58.82457 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0426 1.4415 0.0000 4 6 2.0418 -0.7253 -1.2483 5 6 3.5715 -0.7871 -1.1983 6 6 4.0043 -1.4817 0.0956 7 1 3.6315 -2.5059 0.1006 8 6 5.5318 -1.4940 0.1819 9 7 5.9469 -2.1654 1.4207 10 6 7.4195 -2.2851 1.4908 11 6 7.7312 -3.6118 2.2080 12 6 6.3519 -4.2428 2.5072 13 1 6.0360 -4.0146 3.5251 14 6 6.3872 -5.7326 2.2832 15 1 5.7482 -6.1819 1.5373 16 6 7.2353 -6.5222 3.0305 17 7 8.0137 -5.9751 3.9384 18 14 7.2785 -8.3689 2.7533 19 1 8.2936 -8.6906 1.7183 20 1 7.6331 -9.0519 4.0234 21 1 5.9433 -8.8326 2.2981 22 6 5.4247 -3.5548 1.4738 23 8 3.4695 -0.7743 1.2162 24 6 2.0416 -0.7249 1.2476 25 1 -0.3633 0.5113 0.8915 26 1 -0.3634 0.5162 -0.8885 27 1 -0.3633 -1.0277 -0.0027 28 1 3.1325 1.4395 -0.0029 29 1 1.6778 1.9568 -0.8886 30 1 1.6825 1.9552 0.8914 31 1 1.6366 -1.7369 -1.2741 32 1 1.7278 -0.1825 -2.1398 33 1 3.9780 0.2239 -1.2224 34 1 3.9415 -1.3501 -2.0551 35 1 5.9398 -2.0290 -0.6757 36 1 5.9040 -0.4695 0.1815 37 1 7.8392 -2.2993 0.4850 38 1 7.8336 -1.4489 2.0541 39 1 8.3133 -4.2653 1.5584 40 1 8.2714 -3.4225 3.1355 41 1 8.6106 -6.5305 4.4639 42 1 4.3907 -3.5642 1.8186 43 1 5.5109 -4.0358 0.4995 44 1 1.7159 -0.1886 2.1389 45 1 1.6430 -1.7392 1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713553843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:44 Heat of formation + Delta-G solvation = -81.326175 kcal Electronic energy + Delta-G solvation = -21559.354173 eV Core-core repulsion = 18574.957020 eV Total energy + Delta-G solvation = -2984.397153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01527 -39.49155 -36.29704 -35.17728 -33.82293 -31.88726 -30.04697 -28.35569 -28.14325 -26.81478 -26.26575 -24.10069 -22.62356 -21.52252 -21.23493 -19.67806 -18.39519 -17.32741 -16.79632 -16.71911 -16.38354 -16.05625 -15.88386 -15.20311 -14.94411 -14.75729 -14.27275 -14.05710 -13.83773 -13.54138 -13.37195 -13.04542 -13.01715 -12.88612 -12.82432 -12.67185 -12.52269 -12.30360 -12.19290 -12.12818 -11.76238 -11.69284 -11.58059 -11.24660 -11.13209 -10.99056 -10.82401 -10.50607 -10.16057 -9.19505 -8.13443 -6.24710 1.41025 1.41716 1.52344 2.42318 2.89365 3.15408 3.21366 3.71632 3.83008 3.85740 3.97542 4.13177 4.15149 4.23249 4.38607 4.42382 4.48188 4.54967 4.62917 4.66108 4.69079 4.74369 4.82134 4.82658 4.87324 4.91909 4.98863 5.04013 5.05542 5.06017 5.16702 5.24480 5.27237 5.31197 5.33016 5.42640 5.56767 5.60451 5.80809 5.86253 6.03542 6.26892 6.39824 6.50665 6.85258 7.43216 8.96123 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.004160 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.994255 B = 6729.725769 C = 7103.787312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.144 4.144 6 C 0.097 3.903 7 H 0.041 0.959 8 C 0.055 3.945 9 N -0.521 5.521 10 C 0.043 3.957 11 C -0.091 4.091 12 C 0.042 3.958 13 H -0.003 1.003 14 C -0.535 4.535 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.062 3.938 23 O -0.380 6.380 24 C 0.063 3.937 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.093 0.907 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 13.088 -11.772 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.146 4.146 5 C -0.182 4.182 6 C 0.039 3.961 7 H 0.059 0.941 8 C -0.073 4.073 9 N -0.245 5.245 10 C -0.085 4.085 11 C -0.130 4.130 12 C 0.023 3.977 13 H 0.015 0.985 14 C -0.574 4.574 15 H 0.073 0.927 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.783 3.217 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.065 4.065 23 O -0.298 6.298 24 C -0.014 4.014 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.111 0.889 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.050 13.465 -11.075 21.194 hybrid contribution 0.517 -1.762 -0.436 1.887 sum -11.533 11.704 -11.511 20.062 Atomic orbital electron populations 1.21766 0.92764 1.02100 1.02719 1.21182 0.96811 0.96583 0.95265 1.21772 1.01062 0.94258 1.01910 1.21659 0.94356 1.00584 0.97978 1.22186 0.97178 1.02039 0.96820 1.22086 0.92788 0.94454 0.86816 0.94071 1.22362 0.94107 1.00099 0.90739 1.64733 1.07930 1.16473 1.35368 1.22866 0.88464 0.98012 0.99154 1.22073 0.99051 0.93935 0.97958 1.19481 0.91547 0.93601 0.93065 0.98494 1.21431 1.22634 0.92895 1.20394 0.92703 1.25787 0.95072 1.03082 0.94639 1.70117 1.25062 1.36929 1.23592 0.85568 0.78632 0.80005 0.77532 1.19953 1.20908 1.19141 1.23022 0.98252 0.87444 0.97823 1.88030 1.20319 1.75720 1.45775 1.22760 0.80952 0.99146 0.98537 0.92043 0.91244 0.92669 0.93118 0.91621 0.92723 0.92166 0.89791 0.90295 0.90076 0.93005 0.89712 0.93542 0.90799 0.94583 0.94524 0.93006 0.92418 0.94962 0.88891 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.49 71.98 0.61 -1.35 16 2 C -0.10 -1.79 0.78 -52.09 -0.04 -1.83 16 3 C -0.13 -2.32 8.08 71.98 0.58 -1.74 16 4 C -0.11 -1.92 4.81 30.71 0.15 -1.78 16 5 C -0.14 -2.96 5.05 30.68 0.16 -2.81 16 6 C 0.10 2.72 2.41 30.63 0.07 2.80 16 7 H 0.04 1.29 6.89 -2.39 -0.02 1.27 16 8 C 0.06 1.70 4.53 86.30 0.39 2.09 16 9 N -0.52 -20.62 5.22 -883.02 -4.61 -25.23 16 10 C 0.04 1.70 6.70 86.45 0.58 2.28 16 11 C -0.09 -4.53 5.51 31.48 0.17 -4.36 16 12 C 0.04 2.25 2.99 -10.33 -0.03 2.22 16 13 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 14 C -0.54 -30.36 8.42 25.60 0.22 -30.14 16 15 H 0.05 3.03 7.78 -2.91 -0.02 3.00 16 16 C 0.01 0.75 5.33 84.66 0.45 1.21 16 17 N -0.92 -54.67 12.44 21.45 0.27 -54.40 16 18 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.06 2.76 4.76 86.65 0.41 3.17 16 23 O -0.38 -11.76 9.70 -148.98 -1.45 -13.20 16 24 C 0.06 1.52 5.54 72.02 0.40 1.92 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 1.04 6.13 -2.39 -0.01 1.03 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.56 6.62 -2.39 -0.02 1.54 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.50 7.97 -2.39 -0.02 1.49 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.65 7.67 -2.39 -0.02 1.64 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.04 1.86 7.84 -2.39 -0.02 1.84 16 40 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.06 2.56 7.65 -2.39 -0.02 2.55 16 43 H 0.03 1.40 7.92 -2.39 -0.02 1.38 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -63.51 340.28 1.27 -62.24 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.92 Total: 12.73 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.12 Total: -28.31 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.35 Total: -79.63 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.45 Total: -13.20 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.51 1.27 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.084 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds