Wall clock time and date at job start Mon Mar 30 2020 07:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.52066 * 2 1 4 4 C 1.53176 * 109.52185 * 120.12894 * 2 1 3 5 5 C 1.53177 * 109.03480 * 176.88960 * 4 2 1 6 6 C 1.53089 * 109.16123 * 303.01510 * 5 4 2 7 7 H 1.09001 * 109.48323 * 297.62077 * 6 5 4 8 8 C 1.52997 * 109.48313 * 177.59522 * 6 5 4 9 9 N 1.46897 * 109.47587 * 180.02562 * 8 6 5 10 10 C 1.46901 * 111.00160 * 189.99880 * 9 8 6 11 11 C 1.50704 * 109.46884 * 163.42829 * 10 9 8 12 12 H 1.07998 * 120.00091 * 1.78654 * 11 10 9 13 13 C 1.37876 * 119.99453 * 181.78240 * 11 10 9 14 14 N 1.31506 * 120.00551 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99730 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47322 * 59.99971 * 15 13 11 17 17 H 1.48491 * 109.47238 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47051 * 300.00072 * 15 13 11 19 19 C 1.46902 * 111.00229 * 66.03872 * 9 8 6 20 20 C 1.52997 * 117.49528 * 131.57418 * 19 9 8 21 21 C 1.53005 * 117.49462 * 62.91791 * 19 9 8 22 22 O 1.42905 * 109.42537 * 57.60493 * 6 5 4 23 23 C 1.42908 * 114.09847 * 298.85903 * 22 6 5 24 24 H 1.08999 * 109.47356 * 299.87051 * 1 2 3 25 25 H 1.09004 * 109.47019 * 59.87276 * 1 2 3 26 26 H 1.08999 * 109.47030 * 179.87114 * 1 2 3 27 27 H 1.09000 * 109.47167 * 180.12602 * 3 2 1 28 28 H 1.09003 * 109.47363 * 300.12439 * 3 2 1 29 29 H 1.08999 * 109.47121 * 60.12535 * 3 2 1 30 30 H 1.08991 * 109.54377 * 57.01509 * 4 2 1 31 31 H 1.09004 * 109.61212 * 296.79747 * 4 2 1 32 32 H 1.08997 * 109.52000 * 183.10991 * 5 4 2 33 33 H 1.08998 * 109.57608 * 62.94982 * 5 4 2 34 34 H 1.08995 * 109.47138 * 60.01714 * 8 6 5 35 35 H 1.09005 * 109.46859 * 300.02598 * 8 6 5 36 36 H 1.08996 * 109.47120 * 43.43298 * 10 9 8 37 37 H 1.08993 * 109.46820 * 283.43021 * 10 9 8 38 38 H 0.96998 * 120.00399 * 179.97438 * 14 13 11 39 39 H 1.08994 * 115.55468 * 277.24444 * 19 9 8 40 40 H 1.09005 * 117.50333 * 359.97438 * 20 19 9 41 41 H 1.08997 * 117.49828 * 145.02832 * 20 19 9 42 42 H 1.08999 * 117.49443 * 214.97997 * 21 19 9 43 43 H 1.08997 * 117.49968 * 359.97095 * 21 19 9 44 44 H 1.09001 * 109.47294 * 301.15818 * 23 22 6 45 45 H 1.09000 * 109.48727 * 181.12969 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0419 -0.7247 1.2487 5 6 3.5716 -0.7864 1.1986 6 6 4.0044 -1.4816 -0.0949 7 1 3.6317 -2.5059 -0.0994 8 6 5.5319 -1.4940 -0.1812 9 7 5.9469 -2.1605 -1.4227 10 6 7.3957 -2.4034 -1.4309 11 6 7.7281 -3.4230 -2.4897 12 1 6.9456 -3.8266 -3.1152 13 6 9.0311 -3.8404 -2.6598 14 7 9.9837 -3.3493 -1.8978 15 14 9.4432 -5.1038 -3.9727 16 1 9.0588 -4.5754 -5.3062 17 1 10.9019 -5.3809 -3.9524 18 1 8.6966 -6.3589 -3.7036 19 6 5.5366 -1.3835 -2.6000 20 6 6.5900 -1.1275 -3.6796 21 6 6.1354 0.0145 -2.7674 22 8 3.4695 -0.7751 -1.2160 23 6 2.0416 -0.7256 -1.2473 24 1 -0.3634 0.5118 0.8911 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 3.1313 1.4411 -0.0023 28 1 1.6766 1.9569 -0.8889 29 1 1.6803 1.9555 0.8911 30 1 1.6367 -1.7361 1.2750 31 1 1.7279 -0.1827 2.1408 32 1 3.9417 -1.3489 2.0558 33 1 3.9790 0.2243 1.2227 34 1 5.9397 -2.0324 0.6742 35 1 5.9043 -0.4696 -0.1767 36 1 7.7069 -2.7777 -0.4557 37 1 7.9189 -1.4719 -1.6465 38 1 10.9004 -3.6432 -2.0173 39 1 4.5074 -1.5326 -2.9264 40 1 7.5877 -1.5353 -3.5162 41 1 6.2538 -1.1078 -4.7162 42 1 5.5001 0.7850 -3.2042 43 1 6.8333 0.3579 -2.0038 44 1 1.6431 -1.7399 -1.2668 45 1 1.7158 -0.1897 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713618277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:20 Heat of formation + Delta-G solvation = -25.728948 kcal Electronic energy + Delta-G solvation = -21971.302682 eV Core-core repulsion = 18989.316406 eV Total energy + Delta-G solvation = -2981.986276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91655 -37.92565 -35.16810 -33.28233 -32.74202 -31.43396 -28.32667 -27.37825 -26.27678 -25.44274 -23.01074 -22.58281 -21.48137 -20.92149 -18.79388 -18.66688 -16.24249 -16.18244 -15.78278 -15.39579 -15.01391 -14.62107 -14.27234 -14.13734 -13.74224 -13.41450 -12.93339 -12.62467 -12.33968 -12.25601 -11.97603 -11.91826 -11.86132 -11.45915 -11.32526 -11.00925 -10.91027 -10.81080 -10.70295 -10.62894 -10.38006 -10.20975 -10.00526 -9.80488 -9.49999 -9.23399 -9.19285 -8.74340 -8.37501 -7.06408 -5.96958 -3.95142 3.37905 3.41567 3.45219 4.07704 4.45913 4.58535 4.69113 4.72869 4.80750 4.97900 5.19817 5.27362 5.33393 5.39287 5.46670 5.51429 5.54215 5.69325 5.74809 5.77776 5.78708 5.84087 5.90995 5.96794 5.97630 6.00394 6.08081 6.11887 6.14530 6.18843 6.34486 6.40097 6.47438 6.54070 6.84278 6.99059 7.28324 7.35935 7.56447 7.59956 7.90874 8.18634 8.34543 8.62875 9.11848 9.65680 11.13298 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.004556 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.668163 B = 6143.668266 C = 6305.114272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.151 4.151 6 C 0.099 3.901 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.506 5.506 10 C 0.186 3.814 11 C -0.492 4.492 12 H 0.064 0.936 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.061 3.939 20 C -0.187 4.187 21 C -0.222 4.222 22 O -0.356 6.356 23 C 0.069 3.931 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.026 0.974 37 H -0.003 1.003 38 H 0.261 0.739 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 7.604 4.769 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.146 4.146 5 C -0.189 4.189 6 C 0.041 3.959 7 H 0.079 0.921 8 C -0.063 4.063 9 N -0.229 5.229 10 C 0.061 3.939 11 C -0.530 4.530 12 H 0.082 0.918 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.048 4.048 20 C -0.224 4.224 21 C -0.262 4.262 22 O -0.274 6.274 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.409 7.195 4.653 18.511 hybrid contribution 0.513 0.065 -0.362 0.631 sum -15.896 7.260 4.291 17.994 Atomic orbital electron populations 1.21796 0.94472 1.01669 1.01721 1.21199 0.95466 0.96757 0.96704 1.21797 1.02205 0.94393 1.00892 1.21625 0.95659 1.00196 0.97077 1.22234 0.95746 1.02112 0.98832 1.22153 0.94505 0.94501 0.84763 0.92149 1.22062 0.91948 0.97613 0.94651 1.62137 1.18989 1.42724 0.99025 1.19835 0.80606 0.95732 0.97733 1.21093 0.92742 1.22395 1.16816 0.91768 1.24969 0.96402 0.96845 0.96579 1.69944 1.00750 1.43984 1.39424 0.86598 0.76915 0.81987 0.82163 1.20234 1.21529 1.20268 1.22446 0.96659 0.91851 0.93853 1.23690 1.03509 1.00960 0.94256 1.23168 1.05112 0.93443 1.04457 1.88158 1.18179 1.76195 1.44901 1.22551 0.82877 0.98761 0.96689 0.92659 0.92614 0.92705 0.91525 0.92985 0.93304 0.92005 0.91961 0.91140 0.91047 0.90402 0.95056 0.95574 0.98519 0.92973 0.87014 0.84700 0.90748 0.90609 0.90397 0.93655 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.49 37.16 0.32 -0.86 16 2 C -0.10 -1.03 0.77 -154.37 -0.12 -1.15 16 3 C -0.14 -1.41 8.08 37.16 0.30 -1.11 16 4 C -0.11 -1.12 4.81 -26.55 -0.13 -1.25 16 5 C -0.15 -1.84 5.05 -26.59 -0.13 -1.97 16 6 C 0.10 1.50 2.88 -26.69 -0.08 1.42 16 7 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 8 C 0.07 1.20 4.77 -3.83 -0.02 1.19 16 9 N -0.51 -11.13 4.68 -228.09 -1.07 -12.19 16 10 C 0.19 4.82 4.27 -4.97 -0.02 4.80 16 11 C -0.49 -13.66 6.50 -34.44 -0.22 -13.88 16 12 H 0.06 1.81 7.78 -52.49 -0.41 1.40 16 13 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 14 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 15 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.06 1.26 4.39 -67.71 -0.30 0.96 16 20 C -0.19 -4.01 8.89 -26.69 -0.24 -4.24 16 21 C -0.22 -4.33 9.26 -26.69 -0.25 -4.58 16 22 O -0.36 -5.41 6.63 -35.23 -0.23 -5.65 16 23 C 0.07 0.82 5.54 37.21 0.21 1.03 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.81 6.15 -51.93 -0.32 0.49 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.89 6.63 -51.93 -0.34 0.55 16 34 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 35 H 0.03 0.59 7.13 -51.93 -0.37 0.22 16 36 H 0.03 0.73 7.80 -51.93 -0.40 0.32 16 37 H 0.00 -0.08 6.03 -51.93 -0.31 -0.39 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 2.23 6.76 -51.93 -0.35 1.88 16 40 H 0.14 3.39 4.78 -51.93 -0.25 3.14 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.61 7.14 -51.93 -0.37 1.24 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -28.92 336.80 -9.46 -38.38 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.17 Total: 1.79 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.78 Total: -18.26 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.33 Total: -38.07 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.23 Total: -5.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.92 -9.46 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713618277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.650 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds