Wall clock time and date at job start Mon Mar 30 2020 07:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.52066 * 2 1 4 4 C 1.53176 * 109.52185 * 120.12894 * 2 1 3 5 5 C 1.53177 * 109.03480 * 176.88960 * 4 2 1 6 6 C 1.53089 * 109.16123 * 303.01510 * 5 4 2 7 7 H 1.09001 * 109.48323 * 297.62077 * 6 5 4 8 8 C 1.52997 * 109.48313 * 177.59522 * 6 5 4 9 9 N 1.46897 * 109.47587 * 180.02562 * 8 6 5 10 10 C 1.46901 * 111.00160 * 189.99880 * 9 8 6 11 11 C 1.50704 * 109.46884 * 163.42829 * 10 9 8 12 12 H 1.07998 * 120.00091 * 1.78654 * 11 10 9 13 13 C 1.37876 * 119.99453 * 181.78240 * 11 10 9 14 14 N 1.31506 * 120.00551 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99730 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47322 * 59.99971 * 15 13 11 17 17 H 1.48491 * 109.47238 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47051 * 300.00072 * 15 13 11 19 19 C 1.46902 * 111.00229 * 66.03872 * 9 8 6 20 20 C 1.52997 * 117.49528 * 131.57418 * 19 9 8 21 21 C 1.53005 * 117.49462 * 62.91791 * 19 9 8 22 22 O 1.42905 * 109.42537 * 57.60493 * 6 5 4 23 23 C 1.42908 * 114.09847 * 298.85903 * 22 6 5 24 24 H 1.08999 * 109.47356 * 299.87051 * 1 2 3 25 25 H 1.09004 * 109.47019 * 59.87276 * 1 2 3 26 26 H 1.08999 * 109.47030 * 179.87114 * 1 2 3 27 27 H 1.09000 * 109.47167 * 180.12602 * 3 2 1 28 28 H 1.09003 * 109.47363 * 300.12439 * 3 2 1 29 29 H 1.08999 * 109.47121 * 60.12535 * 3 2 1 30 30 H 1.08991 * 109.54377 * 57.01509 * 4 2 1 31 31 H 1.09004 * 109.61212 * 296.79747 * 4 2 1 32 32 H 1.08997 * 109.52000 * 183.10991 * 5 4 2 33 33 H 1.08998 * 109.57608 * 62.94982 * 5 4 2 34 34 H 1.08995 * 109.47138 * 60.01714 * 8 6 5 35 35 H 1.09005 * 109.46859 * 300.02598 * 8 6 5 36 36 H 1.08996 * 109.47120 * 43.43298 * 10 9 8 37 37 H 1.08993 * 109.46820 * 283.43021 * 10 9 8 38 38 H 0.96998 * 120.00399 * 179.97438 * 14 13 11 39 39 H 1.08994 * 115.55468 * 277.24444 * 19 9 8 40 40 H 1.09005 * 117.50333 * 359.97438 * 20 19 9 41 41 H 1.08997 * 117.49828 * 145.02832 * 20 19 9 42 42 H 1.08999 * 117.49443 * 214.97997 * 21 19 9 43 43 H 1.08997 * 117.49968 * 359.97095 * 21 19 9 44 44 H 1.09001 * 109.47294 * 301.15818 * 23 22 6 45 45 H 1.09000 * 109.48727 * 181.12969 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0419 -0.7247 1.2487 5 6 3.5716 -0.7864 1.1986 6 6 4.0044 -1.4816 -0.0949 7 1 3.6317 -2.5059 -0.0994 8 6 5.5319 -1.4940 -0.1812 9 7 5.9469 -2.1605 -1.4227 10 6 7.3957 -2.4034 -1.4309 11 6 7.7281 -3.4230 -2.4897 12 1 6.9456 -3.8266 -3.1152 13 6 9.0311 -3.8404 -2.6598 14 7 9.9837 -3.3493 -1.8978 15 14 9.4432 -5.1038 -3.9727 16 1 9.0588 -4.5754 -5.3062 17 1 10.9019 -5.3809 -3.9524 18 1 8.6966 -6.3589 -3.7036 19 6 5.5366 -1.3835 -2.6000 20 6 6.5900 -1.1275 -3.6796 21 6 6.1354 0.0145 -2.7674 22 8 3.4695 -0.7751 -1.2160 23 6 2.0416 -0.7256 -1.2473 24 1 -0.3634 0.5118 0.8911 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 3.1313 1.4411 -0.0023 28 1 1.6766 1.9569 -0.8889 29 1 1.6803 1.9555 0.8911 30 1 1.6367 -1.7361 1.2750 31 1 1.7279 -0.1827 2.1408 32 1 3.9417 -1.3489 2.0558 33 1 3.9790 0.2243 1.2227 34 1 5.9397 -2.0324 0.6742 35 1 5.9043 -0.4696 -0.1767 36 1 7.7069 -2.7777 -0.4557 37 1 7.9189 -1.4719 -1.6465 38 1 10.9004 -3.6432 -2.0173 39 1 4.5074 -1.5326 -2.9264 40 1 7.5877 -1.5353 -3.5162 41 1 6.2538 -1.1078 -4.7162 42 1 5.5001 0.7850 -3.2042 43 1 6.8333 0.3579 -2.0038 44 1 1.6431 -1.7399 -1.2668 45 1 1.7158 -0.1897 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713618277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:20 Heat of formation + Delta-G solvation = -42.182440 kcal Electronic energy + Delta-G solvation = -21972.016159 eV Core-core repulsion = 18989.316406 eV Total energy + Delta-G solvation = -2982.699753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00604 -39.54103 -36.19439 -34.96996 -34.52249 -32.84631 -29.94547 -28.12825 -27.77304 -26.53429 -24.60722 -24.19713 -22.96169 -22.30178 -20.39655 -19.71427 -18.36466 -17.60803 -17.09016 -16.71655 -16.46011 -15.90201 -15.53274 -15.42185 -15.06804 -14.62625 -14.38042 -14.19392 -13.54903 -13.47051 -13.19697 -13.02702 -12.91633 -12.85025 -12.75506 -12.60238 -12.51982 -12.29839 -12.00348 -11.92560 -11.76541 -11.65587 -11.46818 -11.22077 -11.18276 -11.02314 -10.66575 -10.55300 -10.01779 -8.87167 -8.14299 -6.20108 1.42842 1.45386 1.53111 2.43589 2.96556 3.11573 3.20905 3.36479 3.77518 3.87546 3.89278 4.08738 4.19912 4.24394 4.32671 4.35537 4.37135 4.48313 4.64388 4.69225 4.74431 4.80128 4.85254 4.86978 4.87728 4.97149 5.00841 5.06931 5.08488 5.11626 5.17478 5.19838 5.26162 5.29459 5.36409 5.41672 5.47167 5.59008 5.71487 5.73039 6.12771 6.44862 6.51461 6.69675 6.92346 7.45211 8.95811 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.004556 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.668163 B = 6143.668266 C = 6305.114272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.105 4.105 5 C -0.145 4.145 6 C 0.109 3.891 7 H 0.053 0.947 8 C 0.065 3.935 9 N -0.515 5.515 10 C 0.204 3.796 11 C -0.497 4.497 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.064 3.936 20 C -0.201 4.201 21 C -0.200 4.200 22 O -0.376 6.376 23 C 0.063 3.937 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.024 0.976 36 H -0.002 1.002 37 H -0.029 1.029 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 7.847 4.382 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.142 4.142 5 C -0.183 4.183 6 C 0.051 3.949 7 H 0.071 0.929 8 C -0.063 4.063 9 N -0.237 5.237 10 C 0.078 3.922 11 C -0.536 4.536 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.578 5.578 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.045 4.045 20 C -0.238 4.238 21 C -0.239 4.239 22 O -0.295 6.295 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.016 0.984 37 H -0.011 1.011 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.746 7.445 4.270 20.617 hybrid contribution 1.204 0.043 -0.229 1.227 sum -17.541 7.489 4.041 19.496 Atomic orbital electron populations 1.21755 0.92688 1.02208 1.02554 1.21168 0.96789 0.96235 0.95567 1.21767 1.00804 0.94733 1.01726 1.21629 0.93875 1.00798 0.97925 1.22164 0.97406 1.01512 0.97223 1.21922 0.91820 0.94681 0.86484 0.92910 1.22145 0.94688 0.96602 0.92863 1.62075 1.16098 1.44435 1.01122 1.19461 0.83002 0.94048 0.95675 1.21264 0.92834 1.22517 1.16969 0.92296 1.25793 0.96225 0.98813 0.98689 1.70071 1.01101 1.45441 1.41144 0.85545 0.76754 0.79445 0.79563 1.19325 1.21098 1.19536 1.22491 0.96799 0.92320 0.92870 1.23547 1.01824 1.02565 0.95904 1.23098 1.04313 0.93461 1.03055 1.88085 1.20295 1.76120 1.44992 1.22753 0.81066 0.99359 0.98195 0.91673 0.91995 0.92334 0.93616 0.92590 0.92087 0.91609 0.90336 0.90462 0.91401 0.90767 0.95773 0.98365 1.01127 0.92896 0.85597 0.88672 0.88525 0.87786 0.92139 0.93512 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.49 71.98 0.61 -1.22 16 2 C -0.10 -1.73 0.77 -52.09 -0.04 -1.77 16 3 C -0.13 -2.46 8.08 71.98 0.58 -1.88 16 4 C -0.10 -1.91 4.81 30.71 0.15 -1.77 16 5 C -0.14 -3.33 5.05 30.68 0.16 -3.17 16 6 C 0.11 3.23 2.88 30.62 0.09 3.32 16 7 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.06 2.43 4.77 86.30 0.41 2.84 16 9 N -0.51 -23.11 4.68 -875.54 -4.09 -27.20 16 10 C 0.20 11.06 4.27 85.56 0.37 11.42 16 11 C -0.50 -28.32 6.50 25.60 0.17 -28.15 16 12 H 0.06 3.36 7.78 -2.91 -0.02 3.33 16 13 C 0.00 0.13 5.46 84.66 0.46 0.59 16 14 N -0.94 -56.82 13.29 21.45 0.28 -56.54 16 15 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C 0.06 2.62 4.39 44.92 0.20 2.82 16 20 C -0.20 -8.63 8.89 30.62 0.27 -8.36 16 21 C -0.20 -7.70 9.26 30.62 0.28 -7.42 16 22 O -0.38 -10.94 6.63 -148.98 -0.99 -11.93 16 23 C 0.06 1.38 5.54 72.01 0.40 1.78 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.04 1.04 6.15 -2.39 -0.01 1.02 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.62 6.63 -2.39 -0.02 1.61 16 34 H 0.07 2.77 7.86 -2.39 -0.02 2.75 16 35 H 0.02 0.93 7.13 -2.38 -0.02 0.91 16 36 H 0.00 -0.10 7.80 -2.39 -0.02 -0.12 16 37 H -0.03 -1.69 6.03 -2.39 -0.01 -1.70 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.13 4.84 6.76 -2.39 -0.02 4.82 16 40 H 0.10 4.94 4.78 -2.38 -0.01 4.93 16 41 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.06 2.54 7.14 -2.39 -0.02 2.53 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -63.17 336.80 2.26 -60.91 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.93 Total: 18.72 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.10 Total: -30.97 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.81 Total: -83.74 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.99 Total: -11.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.17 2.26 -60.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713618277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.728 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds