Wall clock time and date at job start Mon Mar 30 2020 07:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.57433 * 2 1 4 4 C 1.53174 * 109.52632 * 120.16010 * 2 1 3 5 5 C 1.53175 * 109.03583 * 62.92165 * 4 2 1 6 6 C 1.53091 * 109.16212 * 56.98469 * 5 4 2 7 7 H 1.08998 * 109.48004 * 62.37345 * 6 5 4 8 8 C 1.53002 * 109.48105 * 182.39501 * 6 5 4 9 9 N 1.46898 * 109.47080 * 193.31945 * 8 6 5 10 10 C 1.46901 * 110.99822 * 163.07389 * 9 8 6 11 11 C 1.50699 * 109.46831 * 193.64432 * 10 9 8 12 12 H 1.08001 * 120.00579 * 356.34430 * 11 10 9 13 13 C 1.37879 * 119.99828 * 176.34269 * 11 10 9 14 14 N 1.31515 * 120.00285 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47062 * 89.99972 * 15 13 11 17 17 H 1.48503 * 109.46910 * 210.00046 * 15 13 11 18 18 H 1.48501 * 109.46882 * 329.99647 * 15 13 11 19 19 C 1.46896 * 110.99915 * 287.02543 * 9 8 6 20 20 C 1.53004 * 117.49950 * 151.94843 * 19 9 8 21 21 C 1.53000 * 59.99996 * 252.51095 * 20 19 9 22 22 O 1.42903 * 109.41480 * 302.38894 * 6 5 4 23 23 C 1.42906 * 114.09426 * 61.16005 * 22 6 5 24 24 H 1.08995 * 109.47072 * 299.84274 * 1 2 3 25 25 H 1.08995 * 109.47332 * 59.84269 * 1 2 3 26 26 H 1.08996 * 109.46771 * 179.84260 * 1 2 3 27 27 H 1.08999 * 109.47424 * 180.16172 * 3 2 1 28 28 H 1.09003 * 109.46962 * 300.15719 * 3 2 1 29 29 H 1.08998 * 109.47202 * 60.15387 * 3 2 1 30 30 H 1.08997 * 109.54839 * 182.79580 * 4 2 1 31 31 H 1.08999 * 109.54027 * 302.96981 * 4 2 1 32 32 H 1.09005 * 109.51992 * 176.89032 * 5 4 2 33 33 H 1.08992 * 109.52602 * 297.01517 * 5 4 2 34 34 H 1.09008 * 109.47077 * 313.31571 * 8 6 5 35 35 H 1.08998 * 109.46860 * 73.31698 * 8 6 5 36 36 H 1.09000 * 109.47576 * 313.64671 * 10 9 8 37 37 H 1.09000 * 109.47244 * 73.65043 * 10 9 8 38 38 H 0.96996 * 120.00555 * 180.02562 * 14 13 11 39 39 H 1.09005 * 115.55069 * 297.66095 * 19 9 8 40 40 H 1.09001 * 117.49707 * 0.02562 * 20 19 9 41 41 H 1.09001 * 117.49735 * 145.02297 * 20 19 9 42 42 H 1.09002 * 117.50052 * 252.50470 * 21 20 19 43 43 H 1.09005 * 117.51618 * 107.48065 * 21 20 19 44 44 H 1.09007 * 109.47558 * 178.85648 * 23 22 6 45 45 H 1.08994 * 109.48162 * 58.82715 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0420 -0.7253 1.2482 5 6 1.5877 -2.1873 1.1981 6 6 2.0971 -2.8277 -0.0958 7 1 3.1870 -2.8196 -0.1009 8 6 1.5972 -4.2711 -0.1820 9 7 2.3305 -4.9811 -1.2384 10 6 2.1828 -6.4356 -1.0954 11 6 3.1964 -7.1315 -1.9669 12 1 3.8421 -6.5534 -2.6114 13 6 3.2996 -8.5061 -1.9413 14 7 2.5132 -9.2102 -1.1568 15 14 4.5566 -9.3687 -3.0210 16 1 5.8350 -9.5071 -2.2785 17 1 4.0506 -10.7150 -3.3909 18 1 4.7831 -8.5697 -4.2521 19 6 1.8974 -4.5364 -2.5698 20 6 2.9134 -4.6275 -3.7102 21 6 2.5337 -3.2632 -3.1310 22 8 1.6098 -2.0867 -1.2164 23 6 2.0416 -0.7248 -1.2476 24 1 -0.3633 0.5114 0.8914 25 1 -0.3634 0.5162 -0.8885 26 1 -0.3633 -1.0276 -0.0028 27 1 3.1326 1.4397 -0.0029 28 1 1.6779 1.9569 -0.8886 29 1 1.6824 1.9553 0.8913 30 1 3.1308 -0.6824 1.2741 31 1 1.6370 -0.2467 2.1398 32 1 1.9942 -2.7246 2.0550 33 1 0.4990 -2.2316 1.2234 34 1 1.7619 -4.7703 0.7730 35 1 0.5322 -4.2735 -0.4143 36 1 2.3444 -6.7167 -0.0548 37 1 1.1786 -6.7306 -1.3998 38 1 2.5860 -10.1772 -1.1385 39 1 0.8512 -4.7246 -2.8111 40 1 3.9030 -5.0178 -3.4726 41 1 2.5357 -4.8758 -4.7021 42 1 1.9064 -2.6139 -3.7418 43 1 3.2735 -2.7553 -2.5121 44 1 1.6453 -0.2382 -2.1390 45 1 3.1308 -0.6892 -1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713618284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:23 Heat of formation + Delta-G solvation = -27.090032 kcal Electronic energy + Delta-G solvation = -21943.146773 eV Core-core repulsion = 18961.101475 eV Total energy + Delta-G solvation = -2982.045297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92701 -37.43364 -35.05435 -33.79992 -32.73239 -31.58971 -28.31915 -27.38968 -26.21855 -25.37574 -23.02407 -22.08897 -21.51809 -21.14597 -19.42696 -18.60737 -16.49369 -16.10015 -15.53627 -15.05202 -14.78701 -14.59903 -14.28120 -14.18250 -14.04250 -13.57145 -12.95140 -12.60153 -12.39868 -12.26050 -12.00884 -11.88904 -11.75939 -11.48795 -11.30213 -11.08238 -10.91535 -10.84458 -10.73099 -10.64188 -10.54737 -10.37255 -10.02869 -9.85104 -9.47549 -9.14086 -8.97013 -8.70549 -8.33057 -7.19799 -5.94205 -3.93298 3.36862 3.42609 3.46581 4.07411 4.47416 4.59124 4.69317 4.72863 4.84657 4.88773 5.17021 5.25781 5.32007 5.42384 5.46982 5.51579 5.53247 5.70152 5.74510 5.78230 5.80033 5.85084 5.89393 5.91933 5.98544 5.98875 6.06892 6.12824 6.13596 6.27289 6.36893 6.43751 6.46958 6.52889 6.60235 6.86863 7.08009 7.31241 7.45709 7.60663 7.93937 8.18359 8.35141 8.65049 9.14711 9.69843 11.17215 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.004599 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.948062 B = 6086.384229 C = 6475.524226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.151 4.151 6 C 0.098 3.902 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.511 5.511 10 C 0.195 3.805 11 C -0.498 4.498 12 H 0.070 0.930 13 C 0.052 3.948 14 N -0.903 5.903 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.273 1.273 19 C 0.042 3.958 20 C -0.170 4.170 21 C -0.144 4.144 22 O -0.356 6.356 23 C 0.071 3.929 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.030 0.970 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 19.188 2.703 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.189 4.189 6 C 0.040 3.960 7 H 0.081 0.919 8 C -0.062 4.062 9 N -0.235 5.235 10 C 0.071 3.929 11 C -0.536 4.536 12 H 0.088 0.912 13 C -0.148 4.148 14 N -0.544 5.544 15 Si 0.723 3.277 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.198 1.198 19 C -0.067 4.067 20 C -0.207 4.207 21 C -0.182 4.182 22 O -0.274 6.274 23 C -0.006 4.006 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.991 19.007 2.664 19.296 hybrid contribution -0.124 -0.718 -0.291 0.784 sum -2.115 18.289 2.373 18.563 Atomic orbital electron populations 1.21794 0.94044 1.02537 1.00888 1.21209 0.96714 0.95485 0.96795 1.21792 1.00872 0.95292 1.01699 1.21627 1.00519 0.95376 0.97045 1.22241 1.02008 0.95747 0.98941 1.22160 0.98023 0.91188 0.84613 0.91932 1.22000 0.96025 0.91601 0.96582 1.61926 1.53880 1.08282 0.99446 1.19715 0.95658 0.80047 0.97508 1.21331 1.18343 0.90881 1.23085 0.91179 1.24985 0.96264 0.97573 0.95986 1.69960 1.39012 1.06264 1.39156 0.86550 0.81497 0.78800 0.80885 1.20805 1.21476 1.19836 1.21883 0.94148 1.00593 0.90108 1.23041 1.01262 1.00037 0.96357 1.22749 1.02988 0.90114 1.02323 1.88162 1.73938 1.20513 1.44814 1.22503 0.98059 0.83484 0.96562 0.93302 0.93010 0.91582 0.92692 0.92633 0.92674 0.92004 0.91999 0.91115 0.91137 0.90286 0.95052 0.95219 0.99452 0.93135 0.91877 0.88192 0.90455 0.90664 0.89454 0.89657 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.08 37.16 0.30 -1.07 16 2 C -0.10 -1.02 0.77 -154.37 -0.12 -1.14 16 3 C -0.14 -1.16 8.49 37.16 0.32 -0.84 16 4 C -0.11 -1.13 4.81 -26.55 -0.13 -1.26 16 5 C -0.15 -1.85 5.01 -26.59 -0.13 -1.98 16 6 C 0.10 1.48 2.29 -26.68 -0.06 1.42 16 7 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 8 C 0.07 1.22 4.81 -3.82 -0.02 1.20 16 9 N -0.51 -11.20 4.54 -228.08 -1.04 -12.24 16 10 C 0.20 5.16 4.73 -4.98 -0.02 5.14 16 11 C -0.50 -14.05 8.59 -34.44 -0.30 -14.34 16 12 H 0.07 1.94 5.10 -52.49 -0.27 1.67 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.04 0.86 4.23 -67.71 -0.29 0.58 16 20 C -0.17 -3.33 9.24 -26.73 -0.25 -3.58 16 21 C -0.14 -2.48 7.34 -26.73 -0.20 -2.68 16 22 O -0.36 -5.20 5.68 -35.23 -0.20 -5.40 16 23 C 0.07 0.83 5.03 37.21 0.19 1.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.77 6.14 -51.93 -0.32 0.45 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.87 6.63 -51.93 -0.34 0.52 16 34 H 0.08 1.43 7.67 -51.92 -0.40 1.03 16 35 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 36 H 0.03 0.83 7.77 -51.93 -0.40 0.43 16 37 H -0.01 -0.35 8.08 -51.93 -0.42 -0.77 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.10 2.14 6.38 -51.93 -0.33 1.81 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.50 6.75 -51.93 -0.35 1.15 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 338.09 15.07 5.10 5.10 Total: -1.00 -29.63 338.09 -9.53 -39.17 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.31 Total: -0.96 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.80 Total: -16.14 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.30 Total: -38.72 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.63 -9.53 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713618284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.076 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds