Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.57433 * 2 1 4 4 C 1.53174 * 109.52632 * 120.16010 * 2 1 3 5 5 C 1.53175 * 109.03583 * 62.92165 * 4 2 1 6 6 C 1.53091 * 109.16212 * 56.98469 * 5 4 2 7 7 H 1.08998 * 109.48004 * 62.37345 * 6 5 4 8 8 C 1.53002 * 109.48105 * 182.39501 * 6 5 4 9 9 N 1.46898 * 109.47080 * 193.31945 * 8 6 5 10 10 C 1.46901 * 110.99822 * 163.07389 * 9 8 6 11 11 C 1.50699 * 109.46831 * 193.64432 * 10 9 8 12 12 H 1.08001 * 120.00579 * 356.34430 * 11 10 9 13 13 C 1.37879 * 119.99828 * 176.34269 * 11 10 9 14 14 N 1.31515 * 120.00285 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47062 * 89.99972 * 15 13 11 17 17 H 1.48503 * 109.46910 * 210.00046 * 15 13 11 18 18 H 1.48501 * 109.46882 * 329.99647 * 15 13 11 19 19 C 1.46896 * 110.99915 * 287.02543 * 9 8 6 20 20 C 1.53004 * 117.49950 * 151.94843 * 19 9 8 21 21 C 1.53000 * 59.99996 * 252.51095 * 20 19 9 22 22 O 1.42903 * 109.41480 * 302.38894 * 6 5 4 23 23 C 1.42906 * 114.09426 * 61.16005 * 22 6 5 24 24 H 1.08995 * 109.47072 * 299.84274 * 1 2 3 25 25 H 1.08995 * 109.47332 * 59.84269 * 1 2 3 26 26 H 1.08996 * 109.46771 * 179.84260 * 1 2 3 27 27 H 1.08999 * 109.47424 * 180.16172 * 3 2 1 28 28 H 1.09003 * 109.46962 * 300.15719 * 3 2 1 29 29 H 1.08998 * 109.47202 * 60.15387 * 3 2 1 30 30 H 1.08997 * 109.54839 * 182.79580 * 4 2 1 31 31 H 1.08999 * 109.54027 * 302.96981 * 4 2 1 32 32 H 1.09005 * 109.51992 * 176.89032 * 5 4 2 33 33 H 1.08992 * 109.52602 * 297.01517 * 5 4 2 34 34 H 1.09008 * 109.47077 * 313.31571 * 8 6 5 35 35 H 1.08998 * 109.46860 * 73.31698 * 8 6 5 36 36 H 1.09000 * 109.47576 * 313.64671 * 10 9 8 37 37 H 1.09000 * 109.47244 * 73.65043 * 10 9 8 38 38 H 0.96996 * 120.00555 * 180.02562 * 14 13 11 39 39 H 1.09005 * 115.55069 * 297.66095 * 19 9 8 40 40 H 1.09001 * 117.49707 * 0.02562 * 20 19 9 41 41 H 1.09001 * 117.49735 * 145.02297 * 20 19 9 42 42 H 1.09002 * 117.50052 * 252.50470 * 21 20 19 43 43 H 1.09005 * 117.51618 * 107.48065 * 21 20 19 44 44 H 1.09007 * 109.47558 * 178.85648 * 23 22 6 45 45 H 1.08994 * 109.48162 * 58.82715 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0420 -0.7253 1.2482 5 6 1.5877 -2.1873 1.1981 6 6 2.0971 -2.8277 -0.0958 7 1 3.1870 -2.8196 -0.1009 8 6 1.5972 -4.2711 -0.1820 9 7 2.3305 -4.9811 -1.2384 10 6 2.1828 -6.4356 -1.0954 11 6 3.1964 -7.1315 -1.9669 12 1 3.8421 -6.5534 -2.6114 13 6 3.2996 -8.5061 -1.9413 14 7 2.5132 -9.2102 -1.1568 15 14 4.5566 -9.3687 -3.0210 16 1 5.8350 -9.5071 -2.2785 17 1 4.0506 -10.7150 -3.3909 18 1 4.7831 -8.5697 -4.2521 19 6 1.8974 -4.5364 -2.5698 20 6 2.9134 -4.6275 -3.7102 21 6 2.5337 -3.2632 -3.1310 22 8 1.6098 -2.0867 -1.2164 23 6 2.0416 -0.7248 -1.2476 24 1 -0.3633 0.5114 0.8914 25 1 -0.3634 0.5162 -0.8885 26 1 -0.3633 -1.0276 -0.0028 27 1 3.1326 1.4397 -0.0029 28 1 1.6779 1.9569 -0.8886 29 1 1.6824 1.9553 0.8913 30 1 3.1308 -0.6824 1.2741 31 1 1.6370 -0.2467 2.1398 32 1 1.9942 -2.7246 2.0550 33 1 0.4990 -2.2316 1.2234 34 1 1.7619 -4.7703 0.7730 35 1 0.5322 -4.2735 -0.4143 36 1 2.3444 -6.7167 -0.0548 37 1 1.1786 -6.7306 -1.3998 38 1 2.5860 -10.1772 -1.1385 39 1 0.8512 -4.7246 -2.8111 40 1 3.9030 -5.0178 -3.4726 41 1 2.5357 -4.8758 -4.7021 42 1 1.9064 -2.6139 -3.7418 43 1 3.2735 -2.7553 -2.5121 44 1 1.6453 -0.2382 -2.1390 45 1 3.1308 -0.6892 -1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713618284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = -43.976171 kcal Electronic energy + Delta-G solvation = -21943.879011 eV Core-core repulsion = 18961.101475 eV Total energy + Delta-G solvation = -2982.777535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98352 -38.98623 -36.08283 -35.46534 -34.56265 -32.99977 -29.88742 -28.12459 -27.74381 -26.48571 -24.42188 -23.89248 -22.97846 -22.40299 -21.06560 -19.57685 -18.55428 -17.23791 -16.80018 -16.47633 -16.35423 -15.97716 -15.77588 -15.39344 -15.25721 -14.77966 -14.30683 -14.19537 -13.66889 -13.39549 -13.17821 -13.06072 -12.89425 -12.85356 -12.80903 -12.59978 -12.54548 -12.32655 -12.13838 -11.91300 -11.75558 -11.66544 -11.36496 -11.18106 -11.00893 -10.90256 -10.57436 -10.52942 -9.96194 -9.02758 -8.15409 -6.22888 1.41589 1.43022 1.54066 2.42985 2.94115 3.14766 3.23166 3.33037 3.78106 3.88016 3.90458 4.08423 4.23182 4.26775 4.29897 4.41786 4.46837 4.57902 4.63352 4.74015 4.75476 4.80941 4.86287 4.88656 4.95620 4.97667 5.01426 5.02819 5.08921 5.10336 5.14020 5.20050 5.23516 5.29994 5.37675 5.41061 5.47233 5.54299 5.59581 5.77866 6.10791 6.43714 6.54518 6.68486 6.93883 7.45662 8.96436 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.004599 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.948062 B = 6086.384229 C = 6475.524226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.146 4.146 6 C 0.112 3.888 7 H 0.052 0.948 8 C 0.065 3.935 9 N -0.512 5.512 10 C 0.210 3.790 11 C -0.511 4.511 12 H 0.075 0.925 13 C -0.002 4.002 14 N -0.941 5.941 15 Si 0.965 3.035 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.015 3.985 20 C -0.179 4.179 21 C -0.097 4.097 22 O -0.373 6.373 23 C 0.065 3.935 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.004 0.996 37 H -0.047 1.047 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 21.509 2.037 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.142 4.142 5 C -0.184 4.184 6 C 0.054 3.946 7 H 0.070 0.930 8 C -0.064 4.064 9 N -0.236 5.236 10 C 0.084 3.916 11 C -0.549 4.549 12 H 0.093 0.907 13 C -0.199 4.199 14 N -0.582 5.582 15 Si 0.790 3.210 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.094 4.094 20 C -0.217 4.217 21 C -0.135 4.135 22 O -0.292 6.292 23 C -0.011 4.011 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.022 0.978 37 H -0.029 1.029 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.073 21.364 1.999 21.484 hybrid contribution -0.473 -1.396 -0.071 1.476 sum -1.545 19.968 1.927 20.120 Atomic orbital electron populations 1.21766 0.94097 1.01423 1.01744 1.21180 0.96590 0.96446 0.95643 1.21750 1.01072 0.93826 1.02551 1.21628 1.00742 0.93831 0.98029 1.22174 1.01842 0.97121 0.97259 1.21856 0.97092 0.89291 0.86402 0.93004 1.22097 0.95346 0.93724 0.95187 1.61895 1.54737 1.05719 1.01253 1.19376 0.93441 0.83260 0.95520 1.21661 1.18536 0.91453 1.23259 0.90735 1.25905 0.98290 0.98408 0.97330 1.70099 1.40760 1.06614 1.40747 0.85441 0.78826 0.77509 0.79227 1.19937 1.21087 1.18715 1.21933 0.93743 1.04048 0.89701 1.23055 0.99869 1.02193 0.96541 1.22711 1.01624 0.88770 1.00379 1.88101 1.74153 1.22245 1.44664 1.22723 0.98365 0.81973 0.98069 0.92200 0.92463 0.93627 0.92356 0.91864 0.91810 0.91742 0.90475 0.90838 0.91302 0.90816 0.95914 0.97788 1.02924 0.92976 0.93323 0.90094 0.89239 0.88132 0.88982 0.88380 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.08 71.98 0.58 -1.80 16 2 C -0.10 -1.71 0.77 -52.09 -0.04 -1.75 16 3 C -0.13 -1.78 8.49 71.98 0.61 -1.17 16 4 C -0.10 -1.94 4.81 30.71 0.15 -1.79 16 5 C -0.15 -3.41 5.01 30.68 0.15 -3.26 16 6 C 0.11 3.31 2.29 30.63 0.07 3.38 16 7 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 8 C 0.06 2.45 4.81 86.30 0.42 2.87 16 9 N -0.51 -23.18 4.54 -875.50 -3.97 -27.16 16 10 C 0.21 11.67 4.73 85.56 0.40 12.07 16 11 C -0.51 -29.54 8.59 25.60 0.22 -29.32 16 12 H 0.07 4.18 5.10 -2.91 -0.01 4.16 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 14 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 15 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 19 C 0.01 0.62 4.23 44.92 0.19 0.81 16 20 C -0.18 -6.93 9.24 30.60 0.28 -6.64 16 21 C -0.10 -3.18 7.34 30.60 0.22 -2.96 16 22 O -0.37 -10.38 5.68 -148.98 -0.85 -11.23 16 23 C 0.07 1.35 5.03 72.01 0.36 1.72 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.04 1.01 6.14 -2.39 -0.01 0.99 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.64 6.63 -2.39 -0.02 1.63 16 34 H 0.07 2.80 7.67 -2.38 -0.02 2.79 16 35 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 36 H 0.00 0.24 7.77 -2.39 -0.02 0.22 16 37 H -0.05 -2.86 8.08 -2.39 -0.02 -2.88 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.08 3.45 6.38 -2.39 -0.02 3.44 16 41 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.09 2.97 6.75 -2.38 -0.02 2.95 16 44 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.08 338.09 2.50 -62.58 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.93 Total: 13.83 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.08 Total: -27.53 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.69 Total: -85.06 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.85 Total: -11.23 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -65.08 2.50 -62.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713618284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.601 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds