Wall clock time and date at job start Mon Mar 30 2020 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47916 * 2 1 4 4 C 1.53095 * 109.47992 * 239.96821 * 2 1 3 5 5 C 1.53178 * 109.16400 * 182.40807 * 4 2 1 6 6 C 1.53175 * 109.03586 * 56.97583 * 5 4 2 7 7 C 1.53095 * 109.16568 * 303.02331 * 6 5 4 8 8 H 1.08999 * 109.48924 * 297.61923 * 7 6 5 9 9 C 1.52998 * 109.48002 * 177.59201 * 7 6 5 10 10 N 1.46893 * 109.47005 * 180.02562 * 9 7 6 11 11 C 1.48531 * 111.00319 * 287.39547 * 10 9 7 12 12 C 1.54939 * 103.23008 * 200.28359 * 11 10 9 13 13 C 1.54597 * 102.92382 * 37.40971 * 12 11 10 14 14 H 1.08996 * 110.39106 * 97.00391 * 13 12 11 15 15 C 1.50694 * 110.31103 * 219.13057 * 13 12 11 16 16 H 1.08000 * 120.00563 * 115.71611 * 15 13 12 17 17 C 1.37885 * 119.99902 * 295.71774 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47914 * 111.00123 * 169.99881 * 10 9 7 24 24 O 1.42898 * 109.41681 * 57.60573 * 7 6 5 25 25 H 1.09007 * 109.47120 * 299.97435 * 1 2 3 26 26 H 1.08997 * 109.47678 * 59.97914 * 1 2 3 27 27 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46932 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47079 * 300.02311 * 3 2 1 30 30 H 1.08998 * 109.46974 * 60.02341 * 3 2 1 31 31 H 1.09004 * 109.51942 * 302.31461 * 4 2 1 32 32 H 1.08998 * 109.52000 * 62.49729 * 4 2 1 33 33 H 1.08994 * 109.54466 * 176.84739 * 5 4 2 34 34 H 1.09002 * 109.53856 * 297.02192 * 5 4 2 35 35 H 1.09002 * 109.52265 * 183.11382 * 6 5 4 36 36 H 1.09008 * 109.52056 * 62.92778 * 6 5 4 37 37 H 1.09000 * 109.47634 * 60.05463 * 9 7 6 38 38 H 1.09000 * 109.47377 * 300.05623 * 9 7 6 39 39 H 1.09003 * 110.66334 * 318.71308 * 11 10 9 40 40 H 1.08999 * 110.66983 * 81.67331 * 11 10 9 41 41 H 1.09002 * 110.72047 * 279.05015 * 12 11 10 42 42 H 1.08997 * 110.72767 * 155.77207 * 12 11 10 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.91433 * 26.49056 * 23 10 9 45 45 H 1.08993 * 109.91630 * 265.19795 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 6 4.0176 -1.4600 0.0809 7 6 3.4307 -0.7091 1.2791 8 1 3.8192 0.3091 1.2959 9 6 3.8227 -1.4263 2.5725 10 7 3.2589 -0.7060 3.7219 11 6 3.9822 0.5697 3.9575 12 6 3.6416 0.9033 5.4318 13 6 3.6414 -0.4861 6.1095 14 1 4.6012 -0.6741 6.5907 15 6 2.5252 -0.5761 7.1180 16 1 1.7195 -1.2800 6.9704 17 6 2.5325 0.2403 8.2291 18 7 3.5139 1.0972 8.4090 19 14 1.1485 0.1293 9.4787 20 1 1.3895 1.1048 10.5722 21 1 -0.1435 0.4381 8.8151 22 1 1.0997 -1.2436 10.0426 23 6 3.4109 -1.4914 4.9660 24 8 2.0066 -0.6740 1.1664 25 1 -0.3634 0.5135 0.8903 26 1 -0.3634 0.5141 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1302 1.4423 -0.0005 29 1 1.6766 1.9565 -0.8898 30 1 1.6773 1.9562 0.8902 31 1 1.6442 -1.7376 -1.2708 32 1 1.7147 -0.1845 -2.1398 33 1 3.9391 -1.3328 -2.0706 34 1 3.9689 0.2434 -1.2425 35 1 5.1059 -1.4497 0.1421 36 1 3.6613 -2.4902 0.0865 37 1 4.9090 -1.4530 2.6583 38 1 3.4345 -2.4447 2.5553 39 1 5.0562 0.4318 3.8327 40 1 3.6155 1.3490 3.2894 41 1 2.6584 1.3683 5.5047 42 1 4.4064 1.5455 5.8686 43 1 3.5188 1.6718 9.1905 44 1 4.2677 -2.1598 4.8808 45 1 2.5048 -2.0670 5.1547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714362782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:56 Heat of formation + Delta-G solvation = -59.956459 kcal Electronic energy + Delta-G solvation = -21732.522752 eV Core-core repulsion = 18749.052260 eV Total energy + Delta-G solvation = -2983.470492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99456 -37.82733 -34.23991 -33.54464 -32.72116 -30.58198 -28.23222 -28.12590 -27.35595 -25.53617 -23.94336 -22.25667 -21.51683 -19.95493 -19.40387 -18.95134 -16.44590 -16.21551 -15.64864 -15.23697 -15.02761 -14.42138 -14.34661 -13.88687 -13.55209 -13.29433 -12.98129 -12.57313 -12.51131 -12.23978 -12.02537 -11.95315 -11.79365 -11.59620 -11.26015 -11.20163 -11.03856 -10.95694 -10.86404 -10.61267 -10.51653 -10.47322 -10.11123 -9.85540 -9.60467 -9.19518 -9.07416 -8.72075 -8.32626 -7.55497 -5.94180 -3.95255 3.38502 3.42145 3.45971 3.84520 4.49801 4.54403 4.66619 4.74788 4.84411 5.02768 5.13246 5.22440 5.34988 5.39905 5.42158 5.52357 5.58796 5.65403 5.72047 5.74525 5.82371 5.83397 5.90977 5.95614 5.96020 5.99336 6.11141 6.15644 6.21818 6.29684 6.33443 6.37144 6.43783 6.66302 6.96741 7.21618 7.29634 7.54258 7.60737 7.72903 7.92622 7.98997 8.11646 8.52861 9.05901 9.67587 11.16058 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.004449 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.758870 B = 6292.544018 C = 6657.302416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 C -0.178 4.178 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.099 3.901 8 H 0.058 0.942 9 C 0.054 3.946 10 N -0.503 5.503 11 C 0.029 3.971 12 C -0.090 4.090 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.505 4.505 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.289 1.289 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.045 3.955 24 O -0.344 6.344 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.259 0.741 44 H 0.017 0.983 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -1.751 -19.453 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 C -0.235 4.235 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.190 4.190 7 C 0.040 3.960 8 H 0.075 0.925 9 C -0.075 4.075 10 N -0.226 5.226 11 C -0.099 4.099 12 C -0.128 4.128 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.215 1.215 21 H -0.202 1.202 22 H -0.204 1.204 23 C -0.082 4.082 24 O -0.263 6.263 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.532 -1.616 -19.300 19.375 hybrid contribution 0.423 -0.044 0.612 0.745 sum -0.109 -1.659 -18.688 18.761 Atomic orbital electron populations 1.21720 0.92741 1.02618 1.02246 1.21412 0.94687 0.91178 0.85814 1.22441 1.01732 0.96806 1.02531 1.22194 0.96008 1.01505 0.98278 1.21604 0.95815 1.00892 0.97573 1.22217 1.00827 1.00658 0.95268 1.22042 0.82138 0.98295 0.93497 0.92451 1.22251 0.96400 0.98180 0.90638 1.64700 1.51321 1.03928 1.02694 1.23378 0.94378 0.92258 0.99866 1.22379 1.00859 0.99772 0.89833 1.19478 0.97291 0.89805 0.91293 0.95331 1.21156 1.07390 1.20397 1.05384 0.92532 1.24973 0.95818 0.95422 0.97849 1.69962 1.31578 1.23035 1.28628 0.86683 0.82831 0.77685 0.80944 1.21458 1.20241 1.20371 1.23082 0.98786 0.96513 0.89835 1.88143 1.19991 1.76598 1.41597 0.91475 0.91744 0.92042 0.92192 0.92173 0.91439 0.91273 0.91434 0.91894 0.91763 0.91266 0.91130 0.94158 0.90878 0.95673 0.92143 0.92031 0.92473 0.93138 0.96484 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.85 37.16 0.33 -1.21 16 2 C 0.11 1.34 1.11 -90.57 -0.10 1.24 16 3 C -0.18 -2.05 7.93 37.16 0.29 -1.75 16 4 C -0.14 -1.45 4.92 -26.59 -0.13 -1.58 16 5 C -0.12 -1.19 5.72 -26.55 -0.15 -1.34 16 6 C -0.15 -1.71 5.42 -26.59 -0.14 -1.86 16 7 C 0.10 1.41 2.35 -26.68 -0.06 1.35 16 8 H 0.06 0.84 5.57 -51.93 -0.29 0.55 16 9 C 0.05 0.89 4.40 -3.83 -0.02 0.87 16 10 N -0.50 -10.15 5.11 -230.45 -1.18 -11.33 16 11 C 0.03 0.58 5.91 -1.90 -0.01 0.57 16 12 C -0.09 -2.17 5.75 -24.87 -0.14 -2.31 16 13 C 0.04 1.03 2.87 -90.42 -0.26 0.77 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 15 C -0.50 -14.22 8.38 -34.44 -0.29 -14.51 16 16 H 0.06 1.59 7.34 -52.49 -0.39 1.20 16 17 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 18 N -0.89 -26.08 12.63 55.43 0.70 -25.38 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 C 0.05 1.00 6.32 -2.75 -0.02 0.98 16 24 O -0.34 -5.45 9.74 -35.23 -0.34 -5.79 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.68 4.98 -51.93 -0.26 0.43 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.61 6.62 -51.93 -0.34 0.27 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 37 H 0.04 0.62 7.83 -51.93 -0.41 0.22 16 38 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.03 0.47 7.81 -51.93 -0.41 0.07 16 40 H 0.06 1.14 7.80 -51.93 -0.40 0.73 16 41 H 0.06 1.61 7.86 -51.93 -0.41 1.20 16 42 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.02 0.35 7.77 -51.93 -0.40 -0.06 16 45 H 0.07 1.63 7.39 -51.93 -0.38 1.25 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -29.61 338.63 -9.85 -39.46 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.32 Total: -1.69 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.80 Total: -17.15 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.48 Total: -36.70 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.34 Total: -5.79 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.61 -9.85 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.495 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds