Wall clock time and date at job start Mon Mar 30 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47916 * 2 1 4 4 C 1.53095 * 109.47992 * 239.96821 * 2 1 3 5 5 C 1.53178 * 109.16400 * 182.40807 * 4 2 1 6 6 C 1.53175 * 109.03586 * 56.97583 * 5 4 2 7 7 C 1.53095 * 109.16568 * 303.02331 * 6 5 4 8 8 H 1.08999 * 109.48924 * 297.61923 * 7 6 5 9 9 C 1.52998 * 109.48002 * 177.59201 * 7 6 5 10 10 N 1.46893 * 109.47005 * 180.02562 * 9 7 6 11 11 C 1.48531 * 111.00319 * 287.39547 * 10 9 7 12 12 C 1.54939 * 103.23008 * 200.28359 * 11 10 9 13 13 C 1.54597 * 102.92382 * 37.40971 * 12 11 10 14 14 H 1.08996 * 110.39106 * 97.00391 * 13 12 11 15 15 C 1.50694 * 110.31103 * 219.13057 * 13 12 11 16 16 H 1.08000 * 120.00563 * 115.71611 * 15 13 12 17 17 C 1.37885 * 119.99902 * 295.71774 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47914 * 111.00123 * 169.99881 * 10 9 7 24 24 O 1.42898 * 109.41681 * 57.60573 * 7 6 5 25 25 H 1.09007 * 109.47120 * 299.97435 * 1 2 3 26 26 H 1.08997 * 109.47678 * 59.97914 * 1 2 3 27 27 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46932 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47079 * 300.02311 * 3 2 1 30 30 H 1.08998 * 109.46974 * 60.02341 * 3 2 1 31 31 H 1.09004 * 109.51942 * 302.31461 * 4 2 1 32 32 H 1.08998 * 109.52000 * 62.49729 * 4 2 1 33 33 H 1.08994 * 109.54466 * 176.84739 * 5 4 2 34 34 H 1.09002 * 109.53856 * 297.02192 * 5 4 2 35 35 H 1.09002 * 109.52265 * 183.11382 * 6 5 4 36 36 H 1.09008 * 109.52056 * 62.92778 * 6 5 4 37 37 H 1.09000 * 109.47634 * 60.05463 * 9 7 6 38 38 H 1.09000 * 109.47377 * 300.05623 * 9 7 6 39 39 H 1.09003 * 110.66334 * 318.71308 * 11 10 9 40 40 H 1.08999 * 110.66983 * 81.67331 * 11 10 9 41 41 H 1.09002 * 110.72047 * 279.05015 * 12 11 10 42 42 H 1.08997 * 110.72767 * 155.77207 * 12 11 10 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.91433 * 26.49056 * 23 10 9 45 45 H 1.08993 * 109.91630 * 265.19795 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 6 4.0176 -1.4600 0.0809 7 6 3.4307 -0.7091 1.2791 8 1 3.8192 0.3091 1.2959 9 6 3.8227 -1.4263 2.5725 10 7 3.2589 -0.7060 3.7219 11 6 3.9822 0.5697 3.9575 12 6 3.6416 0.9033 5.4318 13 6 3.6414 -0.4861 6.1095 14 1 4.6012 -0.6741 6.5907 15 6 2.5252 -0.5761 7.1180 16 1 1.7195 -1.2800 6.9704 17 6 2.5325 0.2403 8.2291 18 7 3.5139 1.0972 8.4090 19 14 1.1485 0.1293 9.4787 20 1 1.3895 1.1048 10.5722 21 1 -0.1435 0.4381 8.8151 22 1 1.0997 -1.2436 10.0426 23 6 3.4109 -1.4914 4.9660 24 8 2.0066 -0.6740 1.1664 25 1 -0.3634 0.5135 0.8903 26 1 -0.3634 0.5141 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1302 1.4423 -0.0005 29 1 1.6766 1.9565 -0.8898 30 1 1.6773 1.9562 0.8902 31 1 1.6442 -1.7376 -1.2708 32 1 1.7147 -0.1845 -2.1398 33 1 3.9391 -1.3328 -2.0706 34 1 3.9689 0.2434 -1.2425 35 1 5.1059 -1.4497 0.1421 36 1 3.6613 -2.4902 0.0865 37 1 4.9090 -1.4530 2.6583 38 1 3.4345 -2.4447 2.5553 39 1 5.0562 0.4318 3.8327 40 1 3.6155 1.3490 3.2894 41 1 2.6584 1.3683 5.5047 42 1 4.4064 1.5455 5.8686 43 1 3.5188 1.6718 9.1905 44 1 4.2677 -2.1598 4.8808 45 1 2.5048 -2.0670 5.1547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714362782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:55 Heat of formation + Delta-G solvation = -77.701383 kcal Electronic energy + Delta-G solvation = -21733.292230 eV Core-core repulsion = 18749.052260 eV Total energy + Delta-G solvation = -2984.239970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01535 -39.48398 -35.64227 -34.49465 -34.40748 -32.21650 -29.97949 -29.43703 -28.26801 -26.92109 -25.70692 -23.38903 -22.60127 -21.53242 -21.24907 -19.99353 -18.56705 -17.26065 -16.87670 -16.59475 -16.36941 -16.04315 -15.71668 -15.05469 -14.87156 -14.53182 -14.40577 -13.93860 -13.83062 -13.38762 -13.31532 -13.14778 -12.91792 -12.83871 -12.79526 -12.64944 -12.58173 -12.39107 -12.35781 -12.05427 -11.84827 -11.74119 -11.55585 -11.54699 -11.18298 -10.84720 -10.80286 -10.49248 -10.08206 -9.14764 -8.12336 -6.20550 1.41418 1.43581 1.50975 2.44454 2.84104 3.14310 3.21106 3.81465 3.88902 3.92371 3.99801 4.14272 4.19932 4.25493 4.31352 4.40784 4.45765 4.47775 4.56377 4.63414 4.71246 4.73166 4.80156 4.84716 4.87988 4.93608 5.00251 5.04099 5.07248 5.09162 5.16494 5.19984 5.24586 5.29485 5.37005 5.42250 5.55050 5.56496 5.73053 5.84885 6.19968 6.31214 6.40594 6.64727 6.86893 7.45714 8.97248 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.004449 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.758870 B = 6292.544018 C = 6657.302416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.098 3.902 3 C -0.174 4.174 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.146 4.146 7 C 0.101 3.899 8 H 0.054 0.946 9 C 0.053 3.947 10 N -0.516 5.516 11 C 0.045 3.955 12 C -0.082 4.082 13 C 0.032 3.968 14 H 0.002 0.998 15 C -0.526 4.526 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.954 3.046 20 H -0.283 1.283 21 H -0.274 1.274 22 H -0.270 1.270 23 C 0.056 3.944 24 O -0.378 6.378 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.033 0.967 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -2.037 -21.611 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 C -0.232 4.232 4 C -0.175 4.175 5 C -0.157 4.157 6 C -0.185 4.185 7 C 0.043 3.957 8 H 0.071 0.929 9 C -0.076 4.076 10 N -0.240 5.240 11 C -0.082 4.082 12 C -0.121 4.121 13 C 0.013 3.987 14 H 0.020 0.980 15 C -0.565 4.565 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.071 4.071 24 O -0.298 6.298 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.548 -1.911 -21.475 21.566 hybrid contribution 0.421 0.044 1.276 1.345 sum -0.127 -1.867 -20.198 20.285 Atomic orbital electron populations 1.21754 0.92476 1.02472 1.02566 1.21684 0.95046 0.91561 0.85789 1.22411 1.01765 0.96400 1.02576 1.22155 0.96340 1.01239 0.97758 1.21621 0.95427 1.01331 0.97279 1.22171 1.01475 1.00165 0.94642 1.22008 0.81976 0.98201 0.93558 0.92861 1.22378 0.97145 0.98042 0.90016 1.64651 1.52409 1.04009 1.02884 1.23205 0.95425 0.92698 0.96913 1.22137 0.98692 0.98435 0.92815 1.19463 0.95229 0.91799 0.92217 0.97959 1.21480 1.07984 1.20472 1.06528 0.93122 1.25739 0.98147 0.95013 0.99704 1.70077 1.33131 1.23578 1.29193 0.85673 0.79773 0.78045 0.78548 1.20793 1.19923 1.19495 1.22818 0.98754 0.95824 0.89740 1.88092 1.20740 1.77338 1.43637 0.93489 0.89070 0.92416 0.92060 0.89847 0.93655 0.91663 0.89291 0.89921 0.91249 0.89869 0.91353 0.92674 0.90867 0.93947 0.90751 0.94858 0.94086 0.93068 0.94852 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.85 71.98 0.64 -2.26 16 2 C 0.10 2.25 1.11 -10.76 -0.01 2.24 16 3 C -0.17 -3.70 7.93 71.98 0.57 -3.13 16 4 C -0.14 -2.38 4.92 30.69 0.15 -2.23 16 5 C -0.12 -1.92 5.72 30.71 0.18 -1.75 16 6 C -0.15 -2.91 5.42 30.68 0.17 -2.74 16 7 C 0.10 2.71 2.35 30.63 0.07 2.78 16 8 H 0.05 1.47 5.57 -2.39 -0.01 1.45 16 9 C 0.05 1.64 4.40 86.30 0.38 2.02 16 10 N -0.52 -20.59 5.11 -883.02 -4.51 -25.11 16 11 C 0.05 1.79 5.91 86.65 0.51 2.30 16 12 C -0.08 -4.07 5.75 31.80 0.18 -3.89 16 13 C 0.03 1.69 2.87 -10.66 -0.03 1.65 16 14 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 15 C -0.53 -30.43 8.38 25.60 0.21 -30.21 16 16 H 0.05 2.91 7.34 -2.91 -0.02 2.89 16 17 C 0.01 0.72 5.34 84.66 0.45 1.17 16 18 N -0.92 -54.90 12.63 21.45 0.27 -54.63 16 19 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.06 2.51 6.32 86.44 0.55 3.06 16 24 O -0.38 -11.61 9.74 -148.98 -1.45 -13.06 16 25 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.27 4.98 -2.39 -0.01 1.26 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.07 6.62 -2.39 -0.02 1.05 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 37 H 0.06 1.57 7.83 -2.39 -0.02 1.55 16 38 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 39 H 0.04 1.54 7.81 -2.39 -0.02 1.52 16 40 H 0.07 2.74 7.80 -2.39 -0.02 2.73 16 41 H 0.03 1.79 7.86 -2.39 -0.02 1.77 16 42 H 0.04 2.11 8.12 -2.39 -0.02 2.09 16 43 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.03 1.35 7.77 -2.39 -0.02 1.34 16 45 H 0.06 2.70 7.39 -2.39 -0.02 2.68 16 Total: -1.00 -64.78 338.63 1.27 -63.51 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.92 Total: 13.04 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.02 Total: -30.99 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -4.24 Total: -79.74 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.45 Total: -13.06 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.78 1.27 -63.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.192 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds