Wall clock time and date at job start Mon Mar 30 2020 07:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.49025 * 2 1 4 4 C 1.53092 * 109.48019 * 239.96887 * 2 1 3 5 5 C 1.53174 * 109.16255 * 297.62665 * 4 2 1 6 6 C 1.53180 * 109.04499 * 303.02296 * 5 4 2 7 7 C 1.53086 * 109.16231 * 56.96861 * 6 5 4 8 8 H 1.09006 * 109.48305 * 62.39077 * 7 6 5 9 9 C 1.52996 * 109.48141 * 182.41973 * 7 6 5 10 10 N 1.46904 * 109.46994 * 186.54614 * 9 7 6 11 11 C 1.47900 * 110.99715 * 183.56080 * 10 9 7 12 12 C 1.53996 * 107.05985 * 145.84510 * 11 10 9 13 13 C 1.54602 * 105.22242 * 358.72180 * 12 11 10 14 14 H 1.09003 * 110.71920 * 96.45597 * 13 12 11 15 15 C 1.50699 * 110.72205 * 219.73302 * 13 12 11 16 16 H 1.08006 * 119.99659 * 118.54498 * 15 13 12 17 17 C 1.37869 * 120.00493 * 298.55034 * 15 13 12 18 18 N 1.31516 * 120.00584 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99938 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46593 * 90.00162 * 19 17 15 21 21 H 1.48498 * 109.47488 * 210.00063 * 19 17 15 22 22 H 1.48501 * 109.47056 * 330.00429 * 19 17 15 23 23 C 1.48530 * 110.99972 * 300.95390 * 10 9 7 24 24 O 1.42903 * 109.42456 * 302.40728 * 7 6 5 25 25 H 1.08999 * 109.47143 * 299.97323 * 1 2 3 26 26 H 1.09002 * 109.47283 * 59.97449 * 1 2 3 27 27 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47234 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47034 * 300.02636 * 3 2 1 30 30 H 1.08997 * 109.47586 * 60.02390 * 3 2 1 31 31 H 1.09002 * 109.52304 * 57.53181 * 4 2 1 32 32 H 1.08998 * 109.51845 * 177.72086 * 4 2 1 33 33 H 1.08994 * 109.54822 * 62.89089 * 5 4 2 34 34 H 1.09005 * 109.54007 * 183.06753 * 5 4 2 35 35 H 1.08995 * 109.51519 * 297.06123 * 6 5 4 36 36 H 1.09005 * 109.52851 * 176.87676 * 6 5 4 37 37 H 1.08994 * 109.47429 * 66.54641 * 9 7 6 38 38 H 1.09000 * 109.47024 * 306.54104 * 9 7 6 39 39 H 1.09003 * 109.92108 * 26.49014 * 11 10 9 40 40 H 1.09001 * 110.08382 * 265.28298 * 11 10 9 41 41 H 1.08996 * 110.31385 * 117.68716 * 12 11 10 42 42 H 1.08996 * 110.30970 * 239.76156 * 12 11 10 43 43 H 0.96995 * 120.00536 * 180.02562 * 18 17 15 44 44 H 1.09001 * 110.66870 * 318.71858 * 23 10 9 45 45 H 1.08999 * 110.66763 * 81.68140 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5757 -2.1813 -1.2121 6 6 2.0762 -2.8324 0.0810 7 6 1.5645 -2.0285 1.2791 8 1 0.4749 -2.0549 1.2960 9 6 2.1099 -2.6372 2.5725 10 7 1.4965 -1.9660 3.7263 11 6 2.0633 -2.4704 4.9958 12 6 2.0968 -1.2850 5.9782 13 6 1.5484 -0.0803 5.1795 14 1 0.4858 0.0616 5.3767 15 6 2.3238 1.1710 5.5023 16 1 2.8685 1.6845 4.7238 17 6 2.3380 1.6601 6.7912 18 7 3.0143 2.7523 7.0728 19 14 1.3954 0.7722 8.1376 20 1 2.2775 -0.2377 8.7758 21 1 0.9473 1.7536 9.1580 22 1 0.2121 0.0947 7.5491 23 6 1.7807 -0.5082 3.7070 24 8 2.0065 -0.6742 1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1304 1.4419 -0.0005 29 1 1.6769 1.9564 -0.8898 30 1 1.6777 1.9562 0.8901 31 1 1.6420 -0.2358 -2.1399 32 1 3.1297 -0.6875 -1.2708 33 1 0.4867 -2.2180 -1.2408 34 1 1.9813 -2.7154 -2.0714 35 1 3.1661 -2.8404 0.0864 36 1 1.7032 -3.8548 0.1423 37 1 3.1913 -2.5056 2.6082 38 1 1.8720 -3.7005 2.6021 39 1 3.0739 -2.8433 4.8291 40 1 1.4353 -3.2665 5.3959 41 1 1.4607 -1.4892 6.8394 42 1 3.1194 -1.0905 6.3016 43 1 3.0246 3.0962 7.9796 44 1 2.8132 -0.3214 3.4117 45 1 1.0915 0.0093 3.0397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714362783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:58 Heat of formation + Delta-G solvation = -54.326024 kcal Electronic energy + Delta-G solvation = -22206.831940 eV Core-core repulsion = 19223.605602 eV Total energy + Delta-G solvation = -2983.226338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08060 -37.93772 -34.27374 -33.58905 -32.68117 -30.95477 -28.65642 -27.97652 -27.30609 -25.68312 -23.98715 -22.18674 -21.38937 -20.21128 -19.34855 -19.07100 -16.57725 -16.35539 -15.72635 -15.26659 -14.98112 -14.63015 -14.19720 -13.97250 -13.48699 -13.30832 -13.01261 -12.65290 -12.52100 -12.46949 -12.19783 -11.96876 -11.93600 -11.66172 -11.45972 -11.31848 -11.04735 -11.02105 -10.90476 -10.55416 -10.51774 -10.32546 -10.00797 -9.77188 -9.65518 -9.41172 -8.98817 -8.87774 -8.47564 -7.75816 -5.99495 -3.97482 3.34905 3.43546 3.47849 3.84163 4.46690 4.50059 4.69562 4.78089 4.83312 5.05081 5.13152 5.26422 5.31087 5.35074 5.42249 5.54799 5.61520 5.65036 5.70899 5.74268 5.79307 5.81024 5.88709 5.92157 5.94439 6.01811 6.04871 6.10884 6.17050 6.24364 6.38436 6.43544 6.46399 6.49006 6.81795 6.93455 6.98628 7.21479 7.48638 7.57394 7.64020 7.76626 7.93869 8.63403 9.05386 9.64156 11.13846 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.005656 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.348179 B = 4948.927163 C = 5656.548443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.148 4.148 7 C 0.092 3.908 8 H 0.068 0.932 9 C 0.056 3.944 10 N -0.525 5.525 11 C 0.042 3.958 12 C -0.141 4.141 13 C 0.011 3.989 14 H 0.035 0.965 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.905 5.905 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.264 1.264 23 C 0.070 3.930 24 O -0.354 6.354 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.262 0.738 44 H 0.044 0.956 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -10.423 -15.853 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.180 4.180 5 C -0.158 4.158 6 C -0.187 4.187 7 C 0.034 3.966 8 H 0.085 0.915 9 C -0.073 4.073 10 N -0.250 5.250 11 C -0.086 4.086 12 C -0.179 4.179 13 C -0.009 4.009 14 H 0.053 0.947 15 C -0.543 4.543 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.057 4.057 24 O -0.274 6.274 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.863 -10.318 -15.607 19.104 hybrid contribution 0.364 -0.510 0.667 0.915 sum -3.499 -10.828 -14.940 18.780 Atomic orbital electron populations 1.22439 0.95995 1.02362 1.02692 1.21415 0.93033 0.92921 0.85476 1.21751 1.01876 0.93419 1.02546 1.22187 1.01626 0.95833 0.98307 1.21603 1.00961 0.95791 0.97484 1.22171 1.01820 0.99471 0.95200 1.22053 0.98684 0.82410 0.93415 0.91460 1.22247 0.97150 0.97767 0.90132 1.64830 1.53569 1.06013 1.00551 1.22770 0.96715 0.98064 0.91070 1.22893 1.01601 0.95909 0.97486 1.20150 0.96758 0.92992 0.90996 0.94739 1.20986 1.30134 1.07593 0.95541 0.90832 1.24976 0.94888 0.94689 0.98523 1.69909 1.42126 1.22105 1.20193 0.86919 0.81262 0.79184 0.81810 1.20483 1.22200 1.18850 1.23160 0.99613 0.84954 0.97935 1.88203 1.73470 1.23839 1.41860 0.91327 0.92116 0.92152 0.91978 0.91705 0.91091 0.91372 0.91289 0.91709 0.91932 0.91291 0.91197 0.94379 0.90455 0.94865 0.91924 0.93442 0.91373 0.92826 0.93748 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 7.93 37.16 0.29 -1.80 16 2 C 0.11 1.42 1.11 -90.58 -0.10 1.32 16 3 C -0.14 -1.76 8.85 37.15 0.33 -1.43 16 4 C -0.14 -1.50 4.92 -26.59 -0.13 -1.63 16 5 C -0.12 -1.18 5.72 -26.55 -0.15 -1.33 16 6 C -0.15 -1.62 5.42 -26.59 -0.14 -1.77 16 7 C 0.09 1.28 2.36 -26.69 -0.06 1.22 16 8 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 9 C 0.06 0.86 4.66 -3.82 -0.02 0.84 16 10 N -0.53 -9.84 5.35 -230.35 -1.23 -11.07 16 11 C 0.04 0.78 6.70 -2.75 -0.02 0.76 16 12 C -0.14 -3.15 4.69 -25.37 -0.12 -3.26 16 13 C 0.01 0.26 2.47 -89.82 -0.22 0.04 16 14 H 0.03 0.88 7.37 -51.93 -0.38 0.50 16 15 C -0.50 -14.50 9.01 -34.44 -0.31 -14.81 16 16 H 0.07 2.29 8.03 -52.48 -0.42 1.87 16 17 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 19 Si 0.88 22.32 24.73 -169.99 -4.20 18.11 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.26 -6.49 6.38 56.52 0.36 -6.13 16 23 C 0.07 1.51 4.22 -1.81 -0.01 1.50 16 24 O -0.35 -5.58 6.63 -35.23 -0.23 -5.82 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.68 4.97 -51.93 -0.26 0.43 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.61 6.62 -51.93 -0.34 0.26 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.62 7.98 -51.93 -0.41 0.21 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.03 0.58 7.68 -51.93 -0.40 0.19 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.05 5.94 -51.93 -0.31 0.74 16 42 H 0.07 1.60 7.80 -51.93 -0.40 1.20 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.04 1.03 7.54 -51.93 -0.39 0.64 16 45 H 0.07 1.60 6.98 -51.93 -0.36 1.23 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -30.71 328.02 -8.98 -39.68 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.26 Total: -0.10 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.76 Total: -18.39 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.46 Total: -38.44 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.23 Total: -5.82 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.20 Total: 18.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.71 -8.98 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.642 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds