Wall clock time and date at job start Mon Mar 30 2020 07:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.49025 * 2 1 4 4 C 1.53092 * 109.48019 * 239.96887 * 2 1 3 5 5 C 1.53174 * 109.16255 * 297.62665 * 4 2 1 6 6 C 1.53180 * 109.04499 * 303.02296 * 5 4 2 7 7 C 1.53086 * 109.16231 * 56.96861 * 6 5 4 8 8 H 1.09006 * 109.48305 * 62.39077 * 7 6 5 9 9 C 1.52996 * 109.48141 * 182.41973 * 7 6 5 10 10 N 1.46904 * 109.46994 * 186.54614 * 9 7 6 11 11 C 1.47900 * 110.99715 * 183.56080 * 10 9 7 12 12 C 1.53996 * 107.05985 * 145.84510 * 11 10 9 13 13 C 1.54602 * 105.22242 * 358.72180 * 12 11 10 14 14 H 1.09003 * 110.71920 * 96.45597 * 13 12 11 15 15 C 1.50699 * 110.72205 * 219.73302 * 13 12 11 16 16 H 1.08006 * 119.99659 * 118.54498 * 15 13 12 17 17 C 1.37869 * 120.00493 * 298.55034 * 15 13 12 18 18 N 1.31516 * 120.00584 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99938 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46593 * 90.00162 * 19 17 15 21 21 H 1.48498 * 109.47488 * 210.00063 * 19 17 15 22 22 H 1.48501 * 109.47056 * 330.00429 * 19 17 15 23 23 C 1.48530 * 110.99972 * 300.95390 * 10 9 7 24 24 O 1.42903 * 109.42456 * 302.40728 * 7 6 5 25 25 H 1.08999 * 109.47143 * 299.97323 * 1 2 3 26 26 H 1.09002 * 109.47283 * 59.97449 * 1 2 3 27 27 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47234 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47034 * 300.02636 * 3 2 1 30 30 H 1.08997 * 109.47586 * 60.02390 * 3 2 1 31 31 H 1.09002 * 109.52304 * 57.53181 * 4 2 1 32 32 H 1.08998 * 109.51845 * 177.72086 * 4 2 1 33 33 H 1.08994 * 109.54822 * 62.89089 * 5 4 2 34 34 H 1.09005 * 109.54007 * 183.06753 * 5 4 2 35 35 H 1.08995 * 109.51519 * 297.06123 * 6 5 4 36 36 H 1.09005 * 109.52851 * 176.87676 * 6 5 4 37 37 H 1.08994 * 109.47429 * 66.54641 * 9 7 6 38 38 H 1.09000 * 109.47024 * 306.54104 * 9 7 6 39 39 H 1.09003 * 109.92108 * 26.49014 * 11 10 9 40 40 H 1.09001 * 110.08382 * 265.28298 * 11 10 9 41 41 H 1.08996 * 110.31385 * 117.68716 * 12 11 10 42 42 H 1.08996 * 110.30970 * 239.76156 * 12 11 10 43 43 H 0.96995 * 120.00536 * 180.02562 * 18 17 15 44 44 H 1.09001 * 110.66870 * 318.71858 * 23 10 9 45 45 H 1.08999 * 110.66763 * 81.68140 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5757 -2.1813 -1.2121 6 6 2.0762 -2.8324 0.0810 7 6 1.5645 -2.0285 1.2791 8 1 0.4749 -2.0549 1.2960 9 6 2.1099 -2.6372 2.5725 10 7 1.4965 -1.9660 3.7263 11 6 2.0633 -2.4704 4.9958 12 6 2.0968 -1.2850 5.9782 13 6 1.5484 -0.0803 5.1795 14 1 0.4858 0.0616 5.3767 15 6 2.3238 1.1710 5.5023 16 1 2.8685 1.6845 4.7238 17 6 2.3380 1.6601 6.7912 18 7 3.0143 2.7523 7.0728 19 14 1.3954 0.7722 8.1376 20 1 2.2775 -0.2377 8.7758 21 1 0.9473 1.7536 9.1580 22 1 0.2121 0.0947 7.5491 23 6 1.7807 -0.5082 3.7070 24 8 2.0065 -0.6742 1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1304 1.4419 -0.0005 29 1 1.6769 1.9564 -0.8898 30 1 1.6777 1.9562 0.8901 31 1 1.6420 -0.2358 -2.1399 32 1 3.1297 -0.6875 -1.2708 33 1 0.4867 -2.2180 -1.2408 34 1 1.9813 -2.7154 -2.0714 35 1 3.1661 -2.8404 0.0864 36 1 1.7032 -3.8548 0.1423 37 1 3.1913 -2.5056 2.6082 38 1 1.8720 -3.7005 2.6021 39 1 3.0739 -2.8433 4.8291 40 1 1.4353 -3.2665 5.3959 41 1 1.4607 -1.4892 6.8394 42 1 3.1194 -1.0905 6.3016 43 1 3.0246 3.0962 7.9796 44 1 2.8132 -0.3214 3.4117 45 1 1.0915 0.0093 3.0397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714362783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:58 Heat of formation + Delta-G solvation = -74.610133 kcal Electronic energy + Delta-G solvation = -22207.711525 eV Core-core repulsion = 19223.605602 eV Total energy + Delta-G solvation = -2984.105923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14159 -39.50397 -35.66363 -34.56009 -34.48793 -32.62671 -30.22009 -29.34981 -28.31599 -27.08268 -25.67305 -23.23768 -22.60600 -21.77642 -21.17549 -20.06966 -18.71115 -17.49901 -17.02906 -16.71761 -16.15993 -15.92863 -15.76990 -15.26818 -14.90991 -14.62928 -14.41781 -14.35395 -13.89557 -13.64565 -13.35954 -13.28560 -13.04806 -12.92396 -12.81672 -12.70238 -12.43363 -12.35314 -12.14441 -11.94628 -11.82263 -11.77422 -11.61707 -11.45658 -11.28086 -11.00748 -10.84625 -10.72894 -10.07328 -9.29729 -8.29337 -6.32987 1.32268 1.36037 1.47422 2.34765 2.82871 3.04585 3.15831 3.76256 3.86473 3.91498 3.98864 4.04287 4.15465 4.19580 4.26902 4.35845 4.42685 4.47119 4.58177 4.64379 4.72278 4.73503 4.77305 4.82074 4.84688 4.90952 4.96372 5.01620 5.06430 5.08332 5.12475 5.15383 5.19412 5.22642 5.29822 5.38298 5.41334 5.55367 5.60922 5.67956 5.99099 6.24165 6.36943 6.55980 6.72710 7.32386 8.87742 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.005656 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.348179 B = 4948.927163 C = 5656.548443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.142 4.142 7 C 0.090 3.910 8 H 0.065 0.935 9 C 0.053 3.947 10 N -0.524 5.524 11 C 0.046 3.954 12 C -0.139 4.139 13 C 0.003 3.997 14 H 0.028 0.972 15 C -0.512 4.512 16 H 0.027 0.973 17 C 0.014 3.986 18 N -0.952 5.952 19 Si 0.946 3.054 20 H -0.262 1.262 21 H -0.292 1.292 22 H -0.248 1.248 23 C 0.093 3.907 24 O -0.390 6.390 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.017 0.983 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -13.471 -16.854 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 C -0.196 4.196 4 C -0.174 4.174 5 C -0.155 4.155 6 C -0.180 4.180 7 C 0.032 3.968 8 H 0.083 0.917 9 C -0.075 4.075 10 N -0.248 5.248 11 C -0.082 4.082 12 C -0.178 4.178 13 C -0.016 4.016 14 H 0.046 0.954 15 C -0.550 4.550 16 H 0.046 0.954 17 C -0.183 4.183 18 N -0.592 5.592 19 Si 0.771 3.229 20 H -0.187 1.187 21 H -0.219 1.219 22 H -0.172 1.172 23 C -0.035 4.035 24 O -0.310 6.310 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.300 -13.389 -16.630 21.998 hybrid contribution 0.869 0.531 0.904 1.362 sum -4.430 -12.857 -15.726 20.791 Atomic orbital electron populations 1.22388 0.95205 1.02791 1.02530 1.21624 0.93696 0.92597 0.85806 1.21781 1.01235 0.94147 1.02416 1.22136 1.01122 0.96608 0.97565 1.21617 1.01515 0.94940 0.97442 1.22126 1.01387 1.00130 0.94381 1.22130 0.98480 0.82138 0.94010 0.91700 1.22438 0.96338 0.99233 0.89463 1.64837 1.54046 1.03973 1.01960 1.22798 0.98314 0.97048 0.90015 1.22764 1.00360 0.96204 0.98440 1.20095 0.95514 0.92305 0.93714 0.95387 1.21195 1.30002 1.09161 0.94665 0.95449 1.25861 0.95865 0.95409 1.01164 1.70059 1.44069 1.24046 1.21051 0.85854 0.80408 0.78306 0.78380 1.18738 1.21934 1.17159 1.22748 0.97732 0.87362 0.95649 1.88156 1.74118 1.25119 1.43627 0.93840 0.89893 0.91362 0.92983 0.88905 0.94073 0.89340 0.92141 0.90875 0.89913 0.91964 0.89040 0.95534 0.87261 0.93640 0.88867 0.92524 0.93236 0.92563 0.96418 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 7.93 71.98 0.57 -3.31 16 2 C 0.10 2.56 1.11 -10.77 -0.01 2.54 16 3 C -0.14 -3.65 8.85 71.98 0.64 -3.01 16 4 C -0.14 -2.60 4.92 30.68 0.15 -2.45 16 5 C -0.12 -1.91 5.72 30.71 0.18 -1.73 16 6 C -0.14 -2.72 5.42 30.68 0.17 -2.55 16 7 C 0.09 2.36 2.36 30.62 0.07 2.44 16 8 H 0.07 1.72 6.34 -2.38 -0.02 1.71 16 9 C 0.05 1.53 4.66 86.30 0.40 1.94 16 10 N -0.52 -18.84 5.35 -882.69 -4.72 -23.56 16 11 C 0.05 1.60 6.70 86.45 0.58 2.18 16 12 C -0.14 -6.07 4.69 31.48 0.15 -5.92 16 13 C 0.00 0.16 2.47 -10.28 -0.03 0.14 16 14 H 0.03 1.43 7.37 -2.39 -0.02 1.42 16 15 C -0.51 -30.83 9.01 25.60 0.23 -30.60 16 16 H 0.03 1.84 8.03 -2.91 -0.02 1.81 16 17 C 0.01 0.83 5.46 84.65 0.46 1.29 16 18 N -0.95 -61.39 13.96 21.44 0.30 -61.09 16 19 Si 0.95 46.13 24.73 68.60 1.70 47.83 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.25 -11.37 6.38 99.48 0.63 -10.74 16 23 C 0.09 4.09 4.22 86.71 0.37 4.46 16 24 O -0.39 -12.43 6.63 -148.98 -0.99 -13.42 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.42 4.97 -2.39 -0.01 1.41 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.09 6.62 -2.39 -0.02 1.07 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 37 H 0.03 0.83 7.98 -2.39 -0.02 0.81 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.05 1.48 7.68 -2.39 -0.02 1.47 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 41 H 0.06 2.34 5.94 -2.39 -0.01 2.33 16 42 H 0.05 2.31 7.80 -2.39 -0.02 2.29 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.02 0.86 7.54 -2.39 -0.02 0.84 16 45 H 0.07 3.04 6.98 -2.39 -0.02 3.02 16 Total: -1.00 -69.52 328.02 1.07 -68.46 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.86 Total: 16.38 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 3.92 Total: -34.60 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -4.42 Total: -84.65 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.99 Total: -13.42 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.70 Total: 47.83 kcal Total: -69.52 1.07 -68.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds