Wall clock time and date at job start Mon Mar 30 2020 07:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.48946 * 2 1 4 4 C 1.53093 * 109.48316 * 239.96817 * 2 1 3 5 5 C 1.53172 * 109.16371 * 182.40950 * 4 2 1 6 6 C 1.53178 * 109.03921 * 56.98189 * 5 4 2 7 7 C 1.53086 * 109.16273 * 303.01980 * 6 5 4 8 8 H 1.09005 * 109.48710 * 297.62135 * 7 6 5 9 9 C 1.52997 * 109.48356 * 177.59051 * 7 6 5 10 10 N 1.46895 * 109.47273 * 178.00983 * 9 7 6 11 11 C 1.48559 * 111.00334 * 294.26800 * 10 9 7 12 12 C 1.54376 * 104.59651 * 200.96229 * 11 10 9 13 13 C 1.54252 * 105.06273 * 23.85481 * 12 11 10 14 14 H 1.09006 * 110.32285 * 241.00340 * 13 12 11 15 15 C 1.50699 * 110.32764 * 118.89682 * 13 12 11 16 16 H 1.08000 * 119.99784 * 275.01857 * 15 13 12 17 17 C 1.37874 * 120.00033 * 95.01516 * 15 13 12 18 18 N 1.31516 * 120.00310 * 184.85653 * 17 15 13 19 19 Si 1.86802 * 120.00139 * 4.85881 * 17 15 13 20 20 H 1.48498 * 109.47473 * 84.87986 * 19 17 15 21 21 H 1.48504 * 109.47045 * 204.88511 * 19 17 15 22 22 H 1.48507 * 109.46815 * 324.87829 * 19 17 15 23 23 C 1.48563 * 111.00096 * 178.85289 * 10 9 7 24 24 O 1.42901 * 109.41823 * 57.60272 * 7 6 5 25 25 H 1.09008 * 109.47085 * 299.97296 * 1 2 3 26 26 H 1.09002 * 109.47054 * 59.97132 * 1 2 3 27 27 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47340 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46783 * 300.02552 * 3 2 1 30 30 H 1.08997 * 109.47350 * 60.02829 * 3 2 1 31 31 H 1.09000 * 109.52084 * 302.31970 * 4 2 1 32 32 H 1.08997 * 109.52028 * 62.50295 * 4 2 1 33 33 H 1.09008 * 109.54243 * 176.85057 * 5 4 2 34 34 H 1.08999 * 109.54495 * 297.02367 * 5 4 2 35 35 H 1.08998 * 109.52225 * 183.11233 * 6 5 4 36 36 H 1.09003 * 109.51861 * 62.92389 * 6 5 4 37 37 H 1.09002 * 109.46958 * 58.01213 * 9 7 6 38 38 H 1.09003 * 109.47159 * 298.01339 * 9 7 6 39 39 H 1.09001 * 110.41106 * 82.18145 * 11 10 9 40 40 H 1.09000 * 110.41243 * 319.73960 * 11 10 9 41 41 H 1.09002 * 110.32141 * 264.95656 * 12 11 10 42 42 H 1.09005 * 110.32338 * 142.75089 * 12 11 10 43 43 H 0.96996 * 120.00466 * 180.02562 * 18 17 15 44 44 H 1.08997 * 110.41050 * 40.25827 * 23 10 9 45 45 H 1.09004 * 110.40911 * 277.82009 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5710 -0.7709 -1.2120 6 6 4.0176 -1.4601 0.0810 7 6 3.4307 -0.7093 1.2791 8 1 3.8192 0.3090 1.2960 9 6 3.8226 -1.4265 2.5725 10 7 3.2996 -0.6797 3.7243 11 6 3.9526 0.6498 3.8379 12 6 3.7356 1.0654 5.3087 13 6 3.5286 -0.2583 6.0730 14 1 2.5430 -0.2768 6.5383 15 6 4.6021 -0.4341 7.1159 16 1 5.5528 -0.8687 6.8444 17 6 4.3707 -0.0400 8.4167 18 7 5.3380 -0.1044 9.3054 19 14 2.6830 0.5853 8.9170 20 1 1.8095 -0.5661 9.2581 21 1 2.8149 1.4740 10.0994 22 1 2.0830 1.3454 7.7910 23 6 3.6379 -1.3625 4.9996 24 8 2.0066 -0.6741 1.1664 25 1 -0.3634 0.5134 0.8903 26 1 -0.3633 0.5143 -0.8897 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1305 1.4420 -0.0005 29 1 1.6768 1.9564 -0.8898 30 1 1.6777 1.9562 0.8902 31 1 1.6442 -1.7375 -1.2709 32 1 1.7149 -0.1844 -2.1398 33 1 3.9391 -1.3328 -2.0706 34 1 3.9689 0.2434 -1.2423 35 1 5.1058 -1.4498 0.1422 36 1 3.6612 -2.4902 0.0865 37 1 4.9089 -1.4852 2.6405 38 1 3.4037 -2.4328 2.5713 39 1 3.4775 1.3652 3.1666 40 1 5.0173 0.5704 3.6184 41 1 2.8510 1.6961 5.3973 42 1 4.6138 1.5882 5.6879 43 1 5.1751 0.1725 10.2206 44 1 4.6533 -1.7569 4.9619 45 1 2.9258 -2.1623 5.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714362784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:00 Heat of formation + Delta-G solvation = -59.613372 kcal Electronic energy + Delta-G solvation = -21707.572407 eV Core-core repulsion = 18724.116792 eV Total energy + Delta-G solvation = -2983.455615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10263 -38.01150 -34.34192 -33.62624 -32.72035 -31.02845 -28.47905 -28.30768 -27.46120 -25.76486 -23.83453 -22.37517 -21.68044 -20.14126 -19.39244 -18.89839 -16.94193 -16.32771 -15.67339 -15.42932 -15.08522 -14.78557 -14.21593 -14.04376 -13.44088 -13.42348 -13.16099 -12.84556 -12.54118 -12.43004 -12.26598 -12.10525 -11.94098 -11.77904 -11.34272 -11.28574 -11.15550 -11.08687 -10.96533 -10.73245 -10.55058 -10.36894 -10.24639 -9.93411 -9.66624 -9.51460 -9.17268 -8.90751 -8.49545 -7.79384 -6.05742 -4.04297 3.33633 3.41201 3.46136 3.74323 4.44036 4.46439 4.59223 4.66988 4.76751 4.92848 5.04737 5.14705 5.21823 5.30574 5.32753 5.44077 5.49994 5.55908 5.63950 5.67496 5.72415 5.73872 5.78389 5.84165 5.86668 5.88796 5.99304 6.07084 6.13097 6.16863 6.21983 6.27623 6.34979 6.43386 6.72230 6.85406 6.92287 7.17491 7.42797 7.46495 7.49348 7.74614 7.88827 8.55960 8.98082 9.58012 11.07368 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033454 B = 0.004423 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.762408 B = 6328.326774 C = 6715.914790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 C -0.178 4.178 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.151 4.151 7 C 0.096 3.904 8 H 0.059 0.941 9 C 0.053 3.947 10 N -0.506 5.506 11 C 0.038 3.962 12 C -0.123 4.123 13 C 0.015 3.985 14 H 0.038 0.962 15 C -0.509 4.509 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.264 1.264 23 C 0.045 3.955 24 O -0.347 6.347 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.040 0.960 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 0.421 -21.734 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 C -0.236 4.236 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.190 4.190 7 C 0.038 3.962 8 H 0.077 0.923 9 C -0.076 4.076 10 N -0.230 5.230 11 C -0.090 4.090 12 C -0.162 4.162 13 C -0.005 4.005 14 H 0.056 0.944 15 C -0.547 4.547 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.188 1.188 23 C -0.082 4.082 24 O -0.267 6.267 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.640 0.407 -21.479 22.486 hybrid contribution 0.348 0.341 0.214 0.532 sum -6.292 0.748 -21.265 22.189 Atomic orbital electron populations 1.21721 0.92734 1.02635 1.02219 1.21418 0.94653 0.91172 0.85843 1.22447 1.01825 0.96772 1.02512 1.22189 0.96071 1.01515 0.98207 1.21608 0.95739 1.00932 0.97633 1.22208 1.00961 1.00659 0.95136 1.22086 0.82047 0.98416 0.93648 0.92304 1.22244 0.97079 0.98218 0.90095 1.65404 1.52844 1.02785 1.01939 1.23047 0.95764 0.91702 0.98497 1.22690 1.00518 1.00021 0.92927 1.19825 0.97376 0.89963 0.93334 0.94396 1.21046 1.00194 1.41240 0.92258 0.91097 1.25057 0.96690 0.94824 0.96517 1.69911 1.32126 1.48341 1.03654 0.86820 0.85135 0.79330 0.78056 1.20170 1.21729 1.18837 1.23223 0.98451 0.97929 0.88621 1.88120 1.20102 1.76696 1.41733 0.91609 0.91666 0.92001 0.92108 0.92076 0.91567 0.91231 0.91388 0.91800 0.91747 0.91124 0.91057 0.93752 0.90542 0.92008 0.94910 0.93612 0.91325 0.92692 0.94209 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.85 37.15 0.33 -1.05 16 2 C 0.11 1.23 1.11 -90.57 -0.10 1.13 16 3 C -0.18 -1.88 7.93 37.16 0.29 -1.58 16 4 C -0.14 -1.35 4.92 -26.59 -0.13 -1.48 16 5 C -0.12 -1.13 5.72 -26.55 -0.15 -1.28 16 6 C -0.15 -1.63 5.42 -26.59 -0.14 -1.78 16 7 C 0.10 1.30 2.27 -26.69 -0.06 1.24 16 8 H 0.06 0.81 5.21 -51.93 -0.27 0.54 16 9 C 0.05 0.82 4.51 -3.83 -0.02 0.80 16 10 N -0.51 -9.54 5.31 -229.98 -1.22 -10.76 16 11 C 0.04 0.70 5.57 -2.18 -0.01 0.69 16 12 C -0.12 -2.67 6.64 -25.36 -0.17 -2.84 16 13 C 0.01 0.35 2.59 -90.40 -0.23 0.12 16 14 H 0.04 0.94 5.49 -51.93 -0.29 0.65 16 15 C -0.51 -14.29 8.64 -34.44 -0.30 -14.59 16 16 H 0.07 2.16 7.90 -52.49 -0.41 1.74 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.90 26.99 -169.99 -4.59 17.31 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.37 6.86 56.52 0.39 -5.98 16 23 C 0.05 0.95 6.03 -2.18 -0.01 0.94 16 24 O -0.35 -5.09 9.78 -35.23 -0.34 -5.43 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.64 4.98 -51.93 -0.26 0.39 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.58 6.62 -51.93 -0.34 0.24 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 40 H 0.03 0.59 7.89 -51.93 -0.41 0.19 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.55 7.70 -51.93 -0.40 1.15 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.04 0.86 7.59 -51.93 -0.39 0.46 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -30.33 335.91 -9.35 -39.68 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.23 Total: -1.27 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -0.80 Total: -17.74 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.45 Total: -37.61 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.34 Total: -5.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.33 -9.35 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.934 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds