Wall clock time and date at job start Mon Mar 30 2020 07:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.49044 * 2 1 4 4 C 1.53097 * 109.48085 * 120.02572 * 2 1 3 5 5 C 1.53178 * 109.16243 * 177.58898 * 4 2 1 6 6 C 1.53174 * 109.03779 * 303.02133 * 5 4 2 7 7 C 1.53092 * 109.16266 * 56.98244 * 6 5 4 8 8 H 1.08994 * 109.48537 * 62.38411 * 7 6 5 9 9 C 1.52997 * 109.47809 * 182.40782 * 7 6 5 10 10 N 1.46903 * 109.47006 * 185.00034 * 9 7 6 11 11 C 1.47846 * 111.00253 * 49.15474 * 10 9 7 12 12 C 1.54906 * 104.79489 * 146.36307 * 11 10 9 13 13 C 1.55136 * 101.65655 * 322.93289 * 12 11 10 14 14 H 1.09001 * 110.85541 * 277.20201 * 13 12 11 15 15 C 1.50699 * 110.70879 * 154.03575 * 13 12 11 16 16 H 1.08002 * 119.99829 * 271.69050 * 15 13 12 17 17 C 1.37872 * 120.00005 * 91.96393 * 15 13 12 18 18 N 1.31518 * 120.00081 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 120.00118 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47324 * 84.80138 * 19 17 15 21 21 H 1.48496 * 109.47480 * 204.80232 * 19 17 15 22 22 H 1.48499 * 109.47123 * 324.80500 * 19 17 15 23 23 C 1.47444 * 111.00100 * 170.00127 * 10 9 7 24 24 O 1.42903 * 109.41361 * 302.38745 * 7 6 5 25 25 H 1.09003 * 109.47382 * 299.97630 * 1 2 3 26 26 H 1.09003 * 109.46955 * 59.97040 * 1 2 3 27 27 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46950 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47062 * 300.02652 * 3 2 1 30 30 H 1.08990 * 109.47172 * 60.02676 * 3 2 1 31 31 H 1.09000 * 109.51956 * 57.68481 * 4 2 1 32 32 H 1.09000 * 109.57277 * 297.52685 * 4 2 1 33 33 H 1.09001 * 109.54126 * 183.15060 * 5 4 2 34 34 H 1.09007 * 109.61271 * 62.93600 * 5 4 2 35 35 H 1.08995 * 109.52171 * 297.07239 * 6 5 4 36 36 H 1.09000 * 109.52286 * 176.88617 * 6 5 4 37 37 H 1.09002 * 109.47347 * 64.99824 * 9 7 6 38 38 H 1.08997 * 109.47534 * 304.99760 * 9 7 6 39 39 H 1.08996 * 110.37162 * 265.19339 * 11 10 9 40 40 H 1.09000 * 110.36851 * 27.53842 * 11 10 9 41 41 H 1.08996 * 110.99120 * 204.84135 * 12 11 10 42 42 H 1.09003 * 110.99052 * 81.02500 * 12 11 10 43 43 H 0.97001 * 119.99914 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.89216 * 117.33184 * 23 10 9 45 45 H 1.08995 * 110.02290 * 356.22070 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7709 1.2122 6 6 4.0176 -1.4601 -0.0808 7 6 3.4307 -0.7093 -1.2790 8 1 3.8194 0.3088 -1.2959 9 6 3.8227 -1.4267 -2.5723 10 7 3.3621 -0.6426 -3.7260 11 6 3.7581 0.7758 -3.5948 12 6 4.0288 1.2468 -5.0455 13 6 4.6802 -0.0158 -5.6686 14 1 5.7439 -0.0594 -5.4344 15 6 4.4631 -0.0469 -7.1595 16 1 3.5749 -0.5073 -7.5664 17 6 5.4010 0.5074 -8.0045 18 7 5.2113 0.4807 -9.3056 19 14 6.9413 1.2963 -7.3012 20 1 7.9706 0.2516 -7.0687 21 1 7.4646 2.3019 -8.2604 22 1 6.6132 1.9627 -6.0153 23 6 3.9228 -1.1722 -4.9826 24 8 2.0066 -0.6743 -1.1663 25 1 -0.3634 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6769 1.9565 -0.8898 30 1 1.6778 1.9562 0.8901 31 1 1.6443 -1.7374 1.2710 32 1 1.7149 -0.1852 2.1405 33 1 3.9391 -1.3326 2.0707 34 1 3.9702 0.2431 1.2416 35 1 3.6613 -2.4902 -0.0862 36 1 5.1058 -1.4498 -0.1420 37 1 3.3597 -2.4132 -2.5953 38 1 4.9066 -1.5330 -2.6147 39 1 2.9488 1.3563 -3.1522 40 1 4.6625 0.8631 -2.9926 41 1 4.7194 2.0899 -5.0599 42 1 3.0982 1.4976 -5.5547 43 1 5.8713 0.8704 -9.9001 44 1 3.1183 -1.5234 -5.6288 45 1 4.6103 -1.9905 -4.7689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714362785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:03 Heat of formation + Delta-G solvation = -58.038147 kcal Electronic energy + Delta-G solvation = -21797.822801 eV Core-core repulsion = 18814.435493 eV Total energy + Delta-G solvation = -2983.387308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17447 -38.09344 -34.32945 -33.64974 -32.71423 -30.99907 -28.52814 -28.41357 -27.46837 -25.77038 -23.84727 -22.42104 -21.77049 -19.99400 -19.39382 -19.01970 -17.09260 -16.33656 -15.73268 -15.47473 -15.17758 -14.66429 -14.23947 -13.86570 -13.62590 -13.38576 -13.09084 -12.79438 -12.57377 -12.42204 -12.24265 -12.15133 -12.01269 -11.79051 -11.61815 -11.46307 -11.12567 -11.06634 -11.00442 -10.70763 -10.57117 -10.43590 -10.14291 -9.90984 -9.76894 -9.55178 -9.22327 -9.03250 -8.51960 -7.60128 -6.06291 -4.04211 3.27302 3.35931 3.37655 3.71690 4.42284 4.43244 4.57638 4.65509 4.73850 4.89364 5.03203 5.13308 5.19383 5.28534 5.30093 5.42065 5.48886 5.55077 5.61496 5.66329 5.71524 5.73358 5.75833 5.82694 5.85564 5.87541 5.98507 6.05191 6.09588 6.14467 6.16758 6.21018 6.33554 6.36370 6.65611 6.87511 6.92835 7.20707 7.30457 7.45026 7.69013 7.77591 7.80681 8.55792 8.99463 9.56709 11.07052 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034172 B = 0.004418 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.177945 B = 6336.478378 C = 6466.294567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 C -0.179 4.179 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.151 4.151 7 C 0.089 3.911 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.522 5.522 11 C 0.042 3.958 12 C -0.130 4.130 13 C 0.001 3.999 14 H 0.029 0.971 15 C -0.503 4.503 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.053 3.947 24 O -0.348 6.348 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -0.750 22.591 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 C -0.236 4.236 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.190 4.190 7 C 0.031 3.969 8 H 0.081 0.919 9 C -0.069 4.069 10 N -0.246 5.246 11 C -0.085 4.085 12 C -0.168 4.168 13 C -0.019 4.019 14 H 0.048 0.952 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.704 3.296 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.190 1.190 23 C -0.074 4.074 24 O -0.268 6.268 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.752 -0.833 22.253 22.770 hybrid contribution 2.062 0.597 0.538 2.214 sum -2.690 -0.236 22.791 22.951 Atomic orbital electron populations 1.21723 0.92661 1.02666 1.02262 1.21425 0.94684 0.91158 0.85800 1.22453 1.01818 0.96754 1.02580 1.22187 0.96031 1.01539 0.98209 1.21610 0.95767 1.00932 0.97619 1.22207 1.00924 1.00687 0.95144 1.22243 0.82144 0.98670 0.93805 0.91916 1.22282 0.97183 0.98028 0.89435 1.63668 1.57440 1.01880 1.01583 1.23036 0.97330 0.89798 0.98367 1.23053 1.01266 0.99496 0.92997 1.20261 0.94295 0.90655 0.96709 0.95249 1.20970 1.07552 1.37659 0.87915 0.90602 1.25048 0.97969 0.95448 0.94687 1.69903 1.35907 1.45729 1.02394 0.86893 0.83813 0.79600 0.79245 1.20424 1.21570 1.18979 1.22936 0.97686 0.97338 0.89432 1.88115 1.20059 1.76746 1.41837 0.91636 0.91571 0.91975 0.92137 0.91515 0.92021 0.91211 0.91356 0.91785 0.91759 0.91019 0.91171 0.90463 0.93964 0.91632 0.95330 0.92748 0.90955 0.92692 0.90494 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 2 C 0.11 1.22 1.11 -90.57 -0.10 1.11 16 3 C -0.18 -1.87 7.94 37.16 0.29 -1.57 16 4 C -0.14 -1.33 4.92 -26.59 -0.13 -1.46 16 5 C -0.12 -1.13 5.71 -26.55 -0.15 -1.28 16 6 C -0.15 -1.64 5.42 -26.59 -0.14 -1.78 16 7 C 0.09 1.20 2.02 -26.68 -0.05 1.15 16 8 H 0.06 0.87 4.49 -51.93 -0.23 0.64 16 9 C 0.06 0.92 4.49 -3.82 -0.02 0.91 16 10 N -0.52 -9.81 5.26 -231.25 -1.22 -11.03 16 11 C 0.04 0.78 5.22 -2.30 -0.01 0.76 16 12 C -0.13 -2.79 6.35 -24.60 -0.16 -2.95 16 13 C 0.00 0.02 2.32 -89.95 -0.21 -0.19 16 14 H 0.03 0.70 5.99 -51.93 -0.31 0.39 16 15 C -0.50 -14.14 8.90 -34.44 -0.31 -14.44 16 16 H 0.08 2.32 7.83 -52.49 -0.41 1.91 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.59 26.78 -169.99 -4.55 17.04 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.23 6.04 56.52 0.34 -5.88 16 23 C 0.05 1.12 6.45 -2.83 -0.02 1.10 16 24 O -0.35 -5.03 9.82 -35.23 -0.35 -5.38 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.64 4.98 -51.93 -0.26 0.38 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.49 7.06 -51.93 -0.37 0.13 16 41 H 0.05 1.16 7.09 -51.93 -0.37 0.79 16 42 H 0.07 1.63 8.04 -51.93 -0.42 1.21 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 1.73 7.66 -51.93 -0.40 1.33 16 45 H 0.04 0.73 7.50 -51.93 -0.39 0.34 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -30.20 332.47 -9.28 -39.48 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.18 Total: -0.52 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -0.77 Total: -17.75 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.44 Total: -37.88 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.35 Total: -5.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.55 Total: 17.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.20 -9.28 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.555 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds