Wall clock time and date at job start Mon Mar 30 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.49044 * 2 1 4 4 C 1.53097 * 109.48085 * 120.02572 * 2 1 3 5 5 C 1.53178 * 109.16243 * 177.58898 * 4 2 1 6 6 C 1.53174 * 109.03779 * 303.02133 * 5 4 2 7 7 C 1.53092 * 109.16266 * 56.98244 * 6 5 4 8 8 H 1.08994 * 109.48537 * 62.38411 * 7 6 5 9 9 C 1.52997 * 109.47809 * 182.40782 * 7 6 5 10 10 N 1.46903 * 109.47006 * 185.00034 * 9 7 6 11 11 C 1.47846 * 111.00253 * 49.15474 * 10 9 7 12 12 C 1.54906 * 104.79489 * 146.36307 * 11 10 9 13 13 C 1.55136 * 101.65655 * 322.93289 * 12 11 10 14 14 H 1.09001 * 110.85541 * 277.20201 * 13 12 11 15 15 C 1.50699 * 110.70879 * 154.03575 * 13 12 11 16 16 H 1.08002 * 119.99829 * 271.69050 * 15 13 12 17 17 C 1.37872 * 120.00005 * 91.96393 * 15 13 12 18 18 N 1.31518 * 120.00081 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 120.00118 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47324 * 84.80138 * 19 17 15 21 21 H 1.48496 * 109.47480 * 204.80232 * 19 17 15 22 22 H 1.48499 * 109.47123 * 324.80500 * 19 17 15 23 23 C 1.47444 * 111.00100 * 170.00127 * 10 9 7 24 24 O 1.42903 * 109.41361 * 302.38745 * 7 6 5 25 25 H 1.09003 * 109.47382 * 299.97630 * 1 2 3 26 26 H 1.09003 * 109.46955 * 59.97040 * 1 2 3 27 27 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46950 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47062 * 300.02652 * 3 2 1 30 30 H 1.08990 * 109.47172 * 60.02676 * 3 2 1 31 31 H 1.09000 * 109.51956 * 57.68481 * 4 2 1 32 32 H 1.09000 * 109.57277 * 297.52685 * 4 2 1 33 33 H 1.09001 * 109.54126 * 183.15060 * 5 4 2 34 34 H 1.09007 * 109.61271 * 62.93600 * 5 4 2 35 35 H 1.08995 * 109.52171 * 297.07239 * 6 5 4 36 36 H 1.09000 * 109.52286 * 176.88617 * 6 5 4 37 37 H 1.09002 * 109.47347 * 64.99824 * 9 7 6 38 38 H 1.08997 * 109.47534 * 304.99760 * 9 7 6 39 39 H 1.08996 * 110.37162 * 265.19339 * 11 10 9 40 40 H 1.09000 * 110.36851 * 27.53842 * 11 10 9 41 41 H 1.08996 * 110.99120 * 204.84135 * 12 11 10 42 42 H 1.09003 * 110.99052 * 81.02500 * 12 11 10 43 43 H 0.97001 * 119.99914 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.89216 * 117.33184 * 23 10 9 45 45 H 1.08995 * 110.02290 * 356.22070 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7709 1.2122 6 6 4.0176 -1.4601 -0.0808 7 6 3.4307 -0.7093 -1.2790 8 1 3.8194 0.3088 -1.2959 9 6 3.8227 -1.4267 -2.5723 10 7 3.3621 -0.6426 -3.7260 11 6 3.7581 0.7758 -3.5948 12 6 4.0288 1.2468 -5.0455 13 6 4.6802 -0.0158 -5.6686 14 1 5.7439 -0.0594 -5.4344 15 6 4.4631 -0.0469 -7.1595 16 1 3.5749 -0.5073 -7.5664 17 6 5.4010 0.5074 -8.0045 18 7 5.2113 0.4807 -9.3056 19 14 6.9413 1.2963 -7.3012 20 1 7.9706 0.2516 -7.0687 21 1 7.4646 2.3019 -8.2604 22 1 6.6132 1.9627 -6.0153 23 6 3.9228 -1.1722 -4.9826 24 8 2.0066 -0.6743 -1.1663 25 1 -0.3634 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6769 1.9565 -0.8898 30 1 1.6778 1.9562 0.8901 31 1 1.6443 -1.7374 1.2710 32 1 1.7149 -0.1852 2.1405 33 1 3.9391 -1.3326 2.0707 34 1 3.9702 0.2431 1.2416 35 1 3.6613 -2.4902 -0.0862 36 1 5.1058 -1.4498 -0.1420 37 1 3.3597 -2.4132 -2.5953 38 1 4.9066 -1.5330 -2.6147 39 1 2.9488 1.3563 -3.1522 40 1 4.6625 0.8631 -2.9926 41 1 4.7194 2.0899 -5.0599 42 1 3.0982 1.4976 -5.5547 43 1 5.8713 0.8704 -9.9001 44 1 3.1183 -1.5234 -5.6288 45 1 4.6103 -1.9905 -4.7689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714362785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:02 Heat of formation + Delta-G solvation = -77.480461 kcal Electronic energy + Delta-G solvation = -21798.665883 eV Core-core repulsion = 18814.435493 eV Total energy + Delta-G solvation = -2984.230390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13919 -39.59768 -35.62215 -34.53334 -34.45609 -32.57993 -30.16672 -29.59590 -28.27532 -27.03526 -25.54456 -23.54704 -22.72520 -21.39043 -21.15881 -19.98047 -19.21347 -17.27441 -17.04702 -16.63493 -16.40673 -16.00971 -15.51183 -15.06139 -15.04630 -14.61862 -14.50307 -14.16949 -13.99365 -13.51539 -13.41576 -13.21372 -13.03572 -12.88529 -12.86547 -12.64759 -12.49222 -12.47264 -12.10874 -11.95736 -11.90959 -11.78280 -11.70300 -11.53272 -11.37494 -11.11218 -10.85962 -10.68395 -10.11646 -9.09241 -8.28962 -6.32426 1.33410 1.35270 1.46623 2.34667 2.79647 3.03994 3.12963 3.75952 3.86547 3.89769 3.98627 4.05786 4.16505 4.20958 4.25459 4.30291 4.41041 4.45508 4.47156 4.55077 4.70155 4.71687 4.76785 4.81303 4.84140 4.86284 4.93539 5.00930 5.06083 5.08185 5.10647 5.15279 5.18457 5.24327 5.28318 5.39491 5.41361 5.46678 5.53980 5.69664 6.12937 6.26684 6.35528 6.58573 6.73086 7.31970 8.88199 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034172 B = 0.004418 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.177945 B = 6336.478378 C = 6466.294567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.099 3.901 3 C -0.176 4.176 4 C -0.138 4.138 5 C -0.120 4.120 6 C -0.148 4.148 7 C 0.093 3.907 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.533 5.533 11 C 0.056 3.944 12 C -0.128 4.128 13 C -0.004 4.004 14 H 0.037 0.963 15 C -0.510 4.510 16 H 0.029 0.971 17 C 0.010 3.990 18 N -0.952 5.952 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.242 1.242 23 C 0.062 3.938 24 O -0.378 6.378 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.266 0.734 44 H 0.050 0.950 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -0.025 26.258 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 C -0.233 4.233 4 C -0.176 4.176 5 C -0.157 4.157 6 C -0.186 4.186 7 C 0.035 3.965 8 H 0.079 0.921 9 C -0.071 4.071 10 N -0.257 5.257 11 C -0.071 4.071 12 C -0.166 4.166 13 C -0.024 4.024 14 H 0.055 0.945 15 C -0.548 4.548 16 H 0.047 0.953 17 C -0.187 4.187 18 N -0.592 5.592 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.165 1.165 23 C -0.066 4.066 24 O -0.298 6.298 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.425 -0.115 25.954 26.179 hybrid contribution 1.506 0.312 -0.642 1.667 sum -1.918 0.197 25.312 25.385 Atomic orbital electron populations 1.21754 0.92248 1.02525 1.02725 1.21687 0.95129 0.91553 0.85611 1.22428 1.01745 0.96291 1.02841 1.22158 0.96193 1.01301 0.97916 1.21623 0.95555 1.01304 0.97221 1.22173 1.01394 1.00270 0.94750 1.22175 0.82164 0.98579 0.93604 0.92062 1.22387 0.97785 0.97772 0.89201 1.63591 1.57879 1.02514 1.01710 1.22937 0.98667 0.89304 0.96216 1.22925 1.00205 0.98593 0.94901 1.20238 0.95168 0.93016 0.93932 0.94525 1.21195 1.05945 1.36890 0.90765 0.95259 1.25965 1.01770 0.96124 0.94805 1.70064 1.37544 1.47436 1.04155 0.85792 0.79157 0.78871 0.79315 1.19217 1.21405 1.16524 1.22686 0.96766 0.96898 0.90255 1.88074 1.20532 1.77467 1.43727 0.89169 0.93107 0.92425 0.92153 0.93135 0.89903 0.91674 0.89325 0.90098 0.91239 0.91314 0.90105 0.90719 0.92901 0.90593 0.93219 0.92045 0.93012 0.92537 0.93172 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.85 71.98 0.64 -1.85 16 2 C 0.10 1.99 1.11 -10.76 -0.01 1.98 16 3 C -0.18 -3.22 7.94 71.98 0.57 -2.65 16 4 C -0.14 -2.15 4.92 30.69 0.15 -2.00 16 5 C -0.12 -1.78 5.71 30.71 0.18 -1.61 16 6 C -0.15 -2.75 5.42 30.68 0.17 -2.58 16 7 C 0.09 2.28 2.02 30.62 0.06 2.34 16 8 H 0.06 1.52 4.49 -2.39 -0.01 1.51 16 9 C 0.06 1.66 4.49 86.30 0.39 2.04 16 10 N -0.53 -19.49 5.26 -885.55 -4.66 -24.15 16 11 C 0.06 1.94 5.22 86.77 0.45 2.40 16 12 C -0.13 -5.38 6.35 31.98 0.20 -5.18 16 13 C 0.00 -0.18 2.32 -10.36 -0.02 -0.20 16 14 H 0.04 1.68 5.99 -2.39 -0.01 1.66 16 15 C -0.51 -29.64 8.90 25.60 0.23 -29.41 16 16 H 0.03 1.91 7.83 -2.91 -0.02 1.89 16 17 C 0.01 0.59 5.47 84.65 0.46 1.05 16 18 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 19 Si 0.94 44.07 26.78 68.60 1.84 45.90 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.24 -10.29 6.04 99.48 0.60 -9.69 16 23 C 0.06 2.60 6.45 86.65 0.56 3.16 16 24 O -0.38 -10.35 9.82 -148.98 -1.46 -11.81 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.10 4.98 -2.39 -0.01 1.09 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.99 6.63 -2.38 -0.02 0.97 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.53 7.06 -2.39 -0.02 1.52 16 41 H 0.06 2.47 7.09 -2.39 -0.02 2.46 16 42 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.05 2.35 7.66 -2.39 -0.02 2.33 16 45 H 0.05 1.97 7.50 -2.39 -0.02 1.95 16 Total: -1.00 -67.03 332.47 0.86 -66.17 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.83 Total: 16.32 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.02 Total: -32.49 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -4.36 Total: -84.09 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.46 Total: -11.81 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.84 Total: 45.90 kcal Total: -67.03 0.86 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714362785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.309 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds