Wall clock time and date at job start Mon Mar 30 2020 07:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.48896 * 2 1 4 4 C 1.53092 * 109.47956 * 120.02458 * 2 1 3 5 5 C 1.53180 * 109.21337 * 62.40697 * 4 2 1 6 6 C 1.53179 * 109.03377 * 56.94938 * 5 4 2 7 7 C 1.53089 * 109.16536 * 303.01812 * 6 5 4 8 8 H 1.09003 * 109.47873 * 297.62728 * 7 6 5 9 9 C 1.52998 * 109.48437 * 177.59364 * 7 6 5 10 10 N 1.46893 * 109.47315 * 180.02562 * 9 7 6 11 11 C 1.46905 * 111.00000 * 169.99841 * 10 9 7 12 12 C 1.50703 * 109.46957 * 285.57692 * 11 10 9 13 13 H 1.07997 * 120.00218 * 4.95852 * 12 11 10 14 14 C 1.37881 * 119.99635 * 184.95265 * 12 11 10 15 15 N 1.31519 * 119.99539 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47009 * 89.99732 * 16 14 12 18 18 H 1.48501 * 109.46772 * 209.99533 * 16 14 12 19 19 H 1.48498 * 109.46740 * 329.99450 * 16 14 12 20 20 C 1.46894 * 111.00230 * 293.95040 * 10 9 7 21 21 C 1.52998 * 117.50344 * 246.51279 * 20 10 9 22 22 C 1.53000 * 117.50201 * 177.85005 * 20 10 9 23 23 O 1.42904 * 109.41668 * 57.60742 * 7 6 5 24 24 H 1.08998 * 109.47405 * 299.97226 * 1 2 3 25 25 H 1.09001 * 109.46892 * 59.97615 * 1 2 3 26 26 H 1.09007 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47288 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47145 * 300.02909 * 3 2 1 29 29 H 1.09001 * 109.47245 * 60.02319 * 3 2 1 30 30 H 1.09000 * 109.52431 * 302.47279 * 4 2 1 31 31 H 1.08999 * 109.52483 * 182.34542 * 4 2 1 32 32 H 1.09000 * 109.54714 * 176.81384 * 5 4 2 33 33 H 1.09000 * 109.54543 * 296.99513 * 5 4 2 34 34 H 1.08998 * 109.52486 * 62.92900 * 6 5 4 35 35 H 1.09001 * 109.51964 * 183.11325 * 6 5 4 36 36 H 1.08999 * 109.46731 * 300.00486 * 9 7 6 37 37 H 1.09002 * 109.46980 * 59.99808 * 9 7 6 38 38 H 1.09000 * 109.47140 * 45.57410 * 11 10 9 39 39 H 1.09000 * 109.47103 * 165.57556 * 11 10 9 40 40 H 0.96997 * 119.99533 * 180.02562 * 15 14 12 41 41 H 1.09007 * 115.54867 * 32.18460 * 20 10 9 42 42 H 1.09005 * 117.49480 * 359.97438 * 21 20 10 43 43 H 1.08998 * 117.50140 * 145.01617 * 21 20 10 44 44 H 1.09001 * 117.50354 * 214.97943 * 22 20 10 45 45 H 1.09005 * 117.49710 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5770 -2.1817 1.2131 6 6 2.0778 -2.8327 -0.0799 7 6 1.5646 -2.0299 -1.2782 8 1 0.4750 -2.0575 -1.2944 9 6 2.1099 -2.6388 -2.5716 10 7 1.6178 -1.8680 -3.7212 11 6 2.3027 -2.2704 -4.9569 12 6 3.7035 -1.7146 -4.9586 13 1 4.0775 -1.1901 -4.0917 14 6 4.5077 -1.8756 -6.0670 15 7 5.7300 -1.3901 -6.0687 16 14 3.8607 -2.7822 -7.5666 17 1 3.2101 -1.8154 -8.4870 18 1 4.9879 -3.4497 -8.2660 19 1 2.8698 -3.8023 -7.1389 20 6 0.1614 -2.0007 -3.8595 21 6 -0.3672 -2.7341 -5.0938 22 6 -0.5160 -1.2146 -4.9838 23 8 2.0053 -0.6752 -1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1304 1.4420 -0.0005 28 1 1.6769 1.9565 -0.8897 29 1 1.6776 1.9562 0.8902 30 1 1.6420 -0.2357 2.1399 31 1 3.1297 -0.6864 1.2717 32 1 1.9847 -2.7154 2.0716 33 1 0.4881 -2.2194 1.2438 34 1 3.1677 -2.8395 -0.0859 35 1 1.7059 -3.8555 -0.1405 36 1 3.1994 -2.6107 -2.5552 37 1 1.7744 -3.6724 -2.6562 38 1 2.3435 -3.3583 -5.0120 39 1 1.7571 -1.8832 -5.8174 40 1 6.2956 -1.5031 -6.8485 41 1 -0.3902 -2.1222 -2.9272 42 1 0.3658 -3.1179 -5.8034 43 1 -1.2667 -3.3379 -4.9736 44 1 -1.5135 -0.8194 -4.7914 45 1 0.1189 -0.5987 -5.6206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714363021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:05 Heat of formation + Delta-G solvation = -20.269092 kcal Electronic energy + Delta-G solvation = -22075.197367 eV Core-core repulsion = 19093.447848 eV Total energy + Delta-G solvation = -2981.749519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85796 -38.08424 -34.33018 -33.37042 -33.04507 -31.86582 -29.07868 -27.38104 -27.10356 -25.03032 -22.45216 -22.21014 -21.76432 -21.27559 -19.10606 -18.66469 -17.05109 -16.08336 -15.62329 -15.49023 -14.91349 -14.56790 -14.20706 -13.97952 -13.70163 -13.14052 -12.85990 -12.59670 -12.50183 -12.40169 -12.06632 -11.91690 -11.79311 -11.62248 -11.40978 -11.33062 -11.04861 -10.87889 -10.83461 -10.68665 -10.48904 -10.36299 -10.20457 -9.86547 -9.76650 -9.49736 -9.14575 -8.90996 -8.50117 -7.12530 -5.98438 -3.94469 3.30980 3.38419 3.39667 4.02084 4.30494 4.46510 4.66330 4.80952 4.88275 4.97463 5.08734 5.22494 5.33011 5.34070 5.37462 5.42183 5.52697 5.58604 5.60335 5.65043 5.75423 5.81643 5.89472 5.93709 5.96142 6.03347 6.05755 6.06652 6.10602 6.18092 6.24866 6.32995 6.45768 6.47417 6.47849 6.64933 6.67642 6.87507 6.97501 7.67533 7.80491 7.96827 8.13796 8.73651 9.15379 9.63548 11.14996 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.005977 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.724536 B = 4683.832253 C = 5195.853520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 C -0.136 4.136 4 C -0.143 4.143 5 C -0.120 4.120 6 C -0.153 4.153 7 C 0.097 3.903 8 H 0.052 0.948 9 C 0.071 3.929 10 N -0.481 5.481 11 C 0.160 3.840 12 C -0.503 4.503 13 H 0.084 0.916 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.870 3.130 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.028 3.972 21 C -0.232 4.232 22 C -0.174 4.174 23 O -0.337 6.337 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.036 0.964 38 H -0.011 1.011 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -0.824 13.251 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 C -0.193 4.193 4 C -0.180 4.180 5 C -0.157 4.157 6 C -0.191 4.191 7 C 0.039 3.961 8 H 0.069 0.931 9 C -0.057 4.057 10 N -0.202 5.202 11 C 0.034 3.966 12 C -0.541 4.541 13 H 0.102 0.898 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.082 4.082 21 C -0.272 4.272 22 C -0.212 4.212 23 O -0.256 6.256 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.006 0.994 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.600 -0.217 13.088 17.490 hybrid contribution -0.660 -1.468 -0.898 1.843 sum -12.260 -1.685 12.191 17.371 Atomic orbital electron populations 1.22432 0.96502 1.02126 1.02254 1.21400 0.92671 0.93012 0.86117 1.21707 1.02061 0.93587 1.01924 1.22193 1.01849 0.95845 0.98145 1.21595 1.00609 0.95826 0.97698 1.22218 1.02434 0.99369 0.95087 1.22145 0.97176 0.82741 0.94047 0.93058 1.22025 1.02290 0.92996 0.88384 1.61756 0.99471 1.54170 1.04807 1.20278 0.95239 0.93588 0.87445 1.21081 0.94939 1.35353 1.02766 0.89828 1.24884 0.94830 0.95468 0.98114 1.69899 1.07779 1.46264 1.30056 0.86943 0.78768 0.80609 0.83923 1.20181 1.21231 1.19392 1.22687 0.90972 1.02432 0.92113 1.23598 1.03451 0.95239 1.04885 1.22992 1.00997 0.93788 1.03422 1.88235 1.72729 1.23583 1.41064 0.92332 0.91669 0.92346 0.91809 0.91611 0.91944 0.91632 0.91098 0.91977 0.92032 0.90733 0.91379 0.88709 0.94638 0.99361 0.95379 0.92788 0.87766 0.88295 0.89916 0.89472 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 7.94 37.16 0.29 -1.79 16 2 C 0.11 1.47 1.11 -90.57 -0.10 1.37 16 3 C -0.14 -1.74 8.85 37.16 0.33 -1.41 16 4 C -0.14 -1.67 4.92 -26.59 -0.13 -1.80 16 5 C -0.12 -1.33 5.72 -26.55 -0.15 -1.49 16 6 C -0.15 -2.02 5.42 -26.59 -0.14 -2.16 16 7 C 0.10 1.55 2.26 -26.69 -0.06 1.49 16 8 H 0.05 0.77 4.61 -51.93 -0.24 0.53 16 9 C 0.07 1.36 4.48 -3.83 -0.02 1.35 16 10 N -0.48 -10.31 4.52 -228.09 -1.03 -11.34 16 11 C 0.16 3.94 2.44 -4.97 -0.01 3.93 16 12 C -0.50 -14.60 9.14 -34.44 -0.31 -14.91 16 13 H 0.08 2.68 7.82 -52.49 -0.41 2.27 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 16 Si 0.87 21.82 27.37 -169.99 -4.65 17.17 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.27 -6.48 6.69 56.52 0.38 -6.11 16 20 C 0.03 0.50 5.83 -67.72 -0.39 0.11 16 21 C -0.23 -3.93 9.56 -26.69 -0.26 -4.18 16 22 C -0.17 -2.94 9.92 -26.69 -0.26 -3.20 16 23 O -0.34 -6.02 9.74 -35.23 -0.34 -6.37 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.68 4.98 -51.93 -0.26 0.42 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 6.63 -51.93 -0.34 0.29 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.08 7.21 -51.93 -0.37 1.70 16 37 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 38 H -0.01 -0.28 7.22 -51.93 -0.38 -0.65 16 39 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.10 1.64 6.34 -51.93 -0.33 1.31 16 42 H 0.10 1.89 6.02 -51.93 -0.31 1.57 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.10 1.86 7.48 -51.93 -0.39 1.47 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -31.32 336.75 -9.43 -40.75 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.93 Total: 2.80 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.32 Total: -20.80 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.26 Total: -38.63 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.34 Total: -6.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.65 Total: 17.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.32 -9.43 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714363021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.478 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds