Wall clock time and date at job start Mon Mar 30 2020 07:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.48896 * 2 1 4 4 C 1.53092 * 109.47956 * 120.02458 * 2 1 3 5 5 C 1.53180 * 109.21337 * 62.40697 * 4 2 1 6 6 C 1.53179 * 109.03377 * 56.94938 * 5 4 2 7 7 C 1.53089 * 109.16536 * 303.01812 * 6 5 4 8 8 H 1.09003 * 109.47873 * 297.62728 * 7 6 5 9 9 C 1.52998 * 109.48437 * 177.59364 * 7 6 5 10 10 N 1.46893 * 109.47315 * 180.02562 * 9 7 6 11 11 C 1.46905 * 111.00000 * 169.99841 * 10 9 7 12 12 C 1.50703 * 109.46957 * 285.57692 * 11 10 9 13 13 H 1.07997 * 120.00218 * 4.95852 * 12 11 10 14 14 C 1.37881 * 119.99635 * 184.95265 * 12 11 10 15 15 N 1.31519 * 119.99539 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47009 * 89.99732 * 16 14 12 18 18 H 1.48501 * 109.46772 * 209.99533 * 16 14 12 19 19 H 1.48498 * 109.46740 * 329.99450 * 16 14 12 20 20 C 1.46894 * 111.00230 * 293.95040 * 10 9 7 21 21 C 1.52998 * 117.50344 * 246.51279 * 20 10 9 22 22 C 1.53000 * 117.50201 * 177.85005 * 20 10 9 23 23 O 1.42904 * 109.41668 * 57.60742 * 7 6 5 24 24 H 1.08998 * 109.47405 * 299.97226 * 1 2 3 25 25 H 1.09001 * 109.46892 * 59.97615 * 1 2 3 26 26 H 1.09007 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47288 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47145 * 300.02909 * 3 2 1 29 29 H 1.09001 * 109.47245 * 60.02319 * 3 2 1 30 30 H 1.09000 * 109.52431 * 302.47279 * 4 2 1 31 31 H 1.08999 * 109.52483 * 182.34542 * 4 2 1 32 32 H 1.09000 * 109.54714 * 176.81384 * 5 4 2 33 33 H 1.09000 * 109.54543 * 296.99513 * 5 4 2 34 34 H 1.08998 * 109.52486 * 62.92900 * 6 5 4 35 35 H 1.09001 * 109.51964 * 183.11325 * 6 5 4 36 36 H 1.08999 * 109.46731 * 300.00486 * 9 7 6 37 37 H 1.09002 * 109.46980 * 59.99808 * 9 7 6 38 38 H 1.09000 * 109.47140 * 45.57410 * 11 10 9 39 39 H 1.09000 * 109.47103 * 165.57556 * 11 10 9 40 40 H 0.96997 * 119.99533 * 180.02562 * 15 14 12 41 41 H 1.09007 * 115.54867 * 32.18460 * 20 10 9 42 42 H 1.09005 * 117.49480 * 359.97438 * 21 20 10 43 43 H 1.08998 * 117.50140 * 145.01617 * 21 20 10 44 44 H 1.09001 * 117.50354 * 214.97943 * 22 20 10 45 45 H 1.09005 * 117.49710 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5770 -2.1817 1.2131 6 6 2.0778 -2.8327 -0.0799 7 6 1.5646 -2.0299 -1.2782 8 1 0.4750 -2.0575 -1.2944 9 6 2.1099 -2.6388 -2.5716 10 7 1.6178 -1.8680 -3.7212 11 6 2.3027 -2.2704 -4.9569 12 6 3.7035 -1.7146 -4.9586 13 1 4.0775 -1.1901 -4.0917 14 6 4.5077 -1.8756 -6.0670 15 7 5.7300 -1.3901 -6.0687 16 14 3.8607 -2.7822 -7.5666 17 1 3.2101 -1.8154 -8.4870 18 1 4.9879 -3.4497 -8.2660 19 1 2.8698 -3.8023 -7.1389 20 6 0.1614 -2.0007 -3.8595 21 6 -0.3672 -2.7341 -5.0938 22 6 -0.5160 -1.2146 -4.9838 23 8 2.0053 -0.6752 -1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1304 1.4420 -0.0005 28 1 1.6769 1.9565 -0.8897 29 1 1.6776 1.9562 0.8902 30 1 1.6420 -0.2357 2.1399 31 1 3.1297 -0.6864 1.2717 32 1 1.9847 -2.7154 2.0716 33 1 0.4881 -2.2194 1.2438 34 1 3.1677 -2.8395 -0.0859 35 1 1.7059 -3.8555 -0.1405 36 1 3.1994 -2.6107 -2.5552 37 1 1.7744 -3.6724 -2.6562 38 1 2.3435 -3.3583 -5.0120 39 1 1.7571 -1.8832 -5.8174 40 1 6.2956 -1.5031 -6.8485 41 1 -0.3902 -2.1222 -2.9272 42 1 0.3658 -3.1179 -5.8034 43 1 -1.2667 -3.3379 -4.9736 44 1 -1.5135 -0.8194 -4.7914 45 1 0.1189 -0.5987 -5.6206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714363021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:05 Heat of formation + Delta-G solvation = -40.602510 kcal Electronic energy + Delta-G solvation = -22076.079090 eV Core-core repulsion = 19093.447848 eV Total energy + Delta-G solvation = -2982.631242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02529 -39.55367 -35.66400 -34.93954 -34.45063 -33.56034 -30.65917 -28.80937 -28.23595 -26.38027 -24.24624 -23.38499 -23.13819 -22.50877 -20.51537 -19.93178 -19.14768 -17.28252 -17.19996 -16.77578 -16.22516 -15.94584 -15.87507 -15.29976 -14.81989 -14.72459 -14.46754 -14.14053 -13.77858 -13.69047 -13.36932 -13.18422 -13.02900 -12.84311 -12.78616 -12.63425 -12.43286 -12.36679 -12.26667 -11.99597 -11.89485 -11.76295 -11.65516 -11.46457 -11.26059 -11.14167 -10.80033 -10.73184 -10.05354 -8.74668 -8.28683 -6.31193 1.30508 1.32083 1.42759 2.31980 2.82484 2.93624 3.03653 3.26828 3.80472 3.88674 3.91311 3.99260 4.03822 4.11012 4.19630 4.22153 4.33622 4.42247 4.44082 4.57663 4.67714 4.72516 4.75287 4.78678 4.82530 4.89208 4.91712 4.95360 5.03389 5.04892 5.08186 5.10497 5.13903 5.18221 5.22776 5.30618 5.31610 5.43009 5.55489 5.57809 6.01488 6.41593 6.66635 6.73250 6.77295 7.31475 8.88802 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.005977 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.724536 B = 4683.832253 C = 5195.853520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.114 4.114 6 C -0.151 4.151 7 C 0.105 3.895 8 H 0.070 0.930 9 C 0.073 3.927 10 N -0.505 5.505 11 C 0.177 3.823 12 C -0.512 4.512 13 H 0.031 0.969 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.251 1.251 20 C 0.015 3.985 21 C -0.221 4.221 22 C -0.172 4.172 23 O -0.382 6.382 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.050 0.950 38 H -0.013 1.013 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.132 0.868 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 -2.027 14.191 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.056 3.944 3 C -0.193 4.193 4 C -0.178 4.178 5 C -0.151 4.151 6 C -0.189 4.189 7 C 0.047 3.953 8 H 0.087 0.913 9 C -0.055 4.055 10 N -0.226 5.226 11 C 0.050 3.950 12 C -0.551 4.551 13 H 0.049 0.951 14 C -0.190 4.190 15 N -0.590 5.590 16 Si 0.768 3.232 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.175 1.175 20 C -0.094 4.094 21 C -0.260 4.260 22 C -0.210 4.210 23 O -0.302 6.302 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.091 -1.418 14.051 20.669 hybrid contribution 0.483 -0.997 -1.113 1.571 sum -14.609 -2.415 12.937 19.663 Atomic orbital electron populations 1.22364 0.94598 1.02744 1.02882 1.21721 0.94212 0.92849 0.85594 1.21755 1.00953 0.93892 1.02693 1.22172 1.00889 0.96561 0.98138 1.21598 1.01691 0.95070 0.96765 1.22205 1.01157 1.00254 0.95329 1.22068 0.97747 0.82437 0.93059 0.91266 1.22004 0.99715 0.94118 0.89692 1.61596 1.01936 1.55216 1.03840 1.19935 0.92845 0.92771 0.89409 1.21288 0.97617 1.34965 1.01187 0.95081 1.25849 0.94875 0.96416 1.01832 1.70068 1.09456 1.48077 1.31420 0.85749 0.78628 0.79625 0.79164 1.19069 1.20420 1.17458 1.22844 0.88651 1.04000 0.93932 1.23593 1.03981 0.95506 1.02958 1.23060 1.02028 0.93719 1.02182 1.88182 1.73887 1.24656 1.43511 0.89678 0.93069 0.91637 0.93626 0.93305 0.88619 0.88821 0.92873 0.90117 0.90184 0.92948 0.89511 0.93288 0.93161 0.99580 0.95247 0.92483 0.85030 0.90675 0.86366 0.85976 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 7.94 71.98 0.57 -2.97 16 2 C 0.10 2.51 1.11 -10.76 -0.01 2.50 16 3 C -0.14 -3.48 8.85 71.98 0.64 -2.85 16 4 C -0.14 -3.02 4.92 30.69 0.15 -2.87 16 5 C -0.11 -2.21 5.72 30.71 0.18 -2.04 16 6 C -0.15 -3.85 5.42 30.68 0.17 -3.68 16 7 C 0.10 3.30 2.26 30.62 0.07 3.37 16 8 H 0.07 1.91 4.61 -2.39 -0.01 1.90 16 9 C 0.07 2.87 4.48 86.30 0.39 3.26 16 10 N -0.50 -22.03 4.52 -875.53 -3.95 -25.99 16 11 C 0.18 8.92 2.44 85.56 0.21 9.13 16 12 C -0.51 -31.43 9.14 25.60 0.23 -31.20 16 13 H 0.03 2.17 7.82 -2.91 -0.02 2.15 16 14 C 0.01 0.43 5.47 84.65 0.46 0.89 16 15 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 16 Si 0.95 45.75 27.37 68.60 1.88 47.63 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.25 -11.31 6.69 99.48 0.67 -10.65 16 20 C 0.02 0.51 5.83 44.92 0.26 0.77 16 21 C -0.22 -6.85 9.56 30.62 0.29 -6.56 16 22 C -0.17 -5.44 9.92 30.62 0.30 -5.14 16 23 O -0.38 -14.04 9.74 -148.98 -1.45 -15.49 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.27 4.98 -2.38 -0.01 1.26 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.30 6.63 -2.39 -0.02 1.29 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 2.34 7.21 -2.39 -0.02 2.32 16 37 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 38 H -0.01 -0.67 7.22 -2.39 -0.02 -0.69 16 39 H 0.03 1.47 4.78 -2.39 -0.01 1.46 16 40 H 0.27 16.09 8.31 -92.71 -0.77 15.31 16 41 H 0.13 3.70 6.34 -2.38 -0.02 3.69 16 42 H 0.07 2.72 6.02 -2.38 -0.01 2.70 16 43 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.07 2.64 7.48 -2.38 -0.02 2.62 16 Total: -1.00 -73.14 336.75 1.58 -71.56 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.90 Total: 21.17 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.91 Total: -37.37 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.66 Total: -87.50 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.45 Total: -15.49 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -73.14 1.58 -71.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714363021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.960 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds