Wall clock time and date at job start Mon Mar 30 2020 07:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.48711 * 2 1 4 4 C 1.53092 * 109.48165 * 120.02870 * 2 1 3 5 5 C 1.53174 * 109.16062 * 177.58962 * 4 2 1 6 6 C 1.53176 * 109.04105 * 303.01964 * 5 4 2 7 7 C 1.53101 * 109.15951 * 56.98098 * 6 5 4 8 8 H 1.09000 * 109.47956 * 62.38944 * 7 6 5 9 9 C 1.52998 * 109.47615 * 182.40977 * 7 6 5 10 10 N 1.46908 * 109.46916 * 177.29641 * 9 7 6 11 11 C 1.46901 * 110.99895 * 158.01706 * 10 9 7 12 12 C 1.50700 * 109.46782 * 194.33484 * 11 10 9 13 13 H 1.08004 * 120.00291 * 355.22857 * 12 11 10 14 14 C 1.37878 * 119.99926 * 175.23634 * 12 11 10 15 15 N 1.31515 * 119.99952 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00022 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47138 * 119.99669 * 16 14 12 19 19 H 1.48497 * 109.47216 * 239.99851 * 16 14 12 20 20 C 1.46893 * 110.99630 * 281.97083 * 10 9 7 21 21 C 1.53004 * 117.50292 * 353.60732 * 20 10 9 22 22 C 1.52998 * 117.50175 * 284.98273 * 20 10 9 23 23 O 1.42900 * 109.47716 * 239.97320 * 2 1 3 24 24 H 1.09003 * 109.46974 * 299.96669 * 1 2 3 25 25 H 1.08994 * 109.47404 * 59.96998 * 1 2 3 26 26 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47016 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47212 * 300.02902 * 3 2 1 29 29 H 1.08997 * 109.47133 * 60.03127 * 3 2 1 30 30 H 1.09004 * 109.52067 * 57.68548 * 4 2 1 31 31 H 1.08993 * 109.57340 * 297.53062 * 4 2 1 32 32 H 1.09005 * 109.54484 * 183.15218 * 5 4 2 33 33 H 1.09006 * 109.61623 * 62.93551 * 5 4 2 34 34 H 1.08996 * 109.52363 * 297.07935 * 6 5 4 35 35 H 1.09000 * 109.57427 * 176.91325 * 6 5 4 36 36 H 1.08992 * 109.47676 * 57.29399 * 9 7 6 37 37 H 1.08998 * 109.47203 * 297.29051 * 9 7 6 38 38 H 1.08998 * 109.46988 * 74.33413 * 11 10 9 39 39 H 1.08998 * 109.47395 * 314.33211 * 11 10 9 40 40 H 0.97004 * 119.99783 * 0.02562 * 15 14 12 41 41 H 1.09001 * 115.54992 * 139.31463 * 20 10 9 42 42 H 1.08997 * 117.49803 * 359.97438 * 21 20 10 43 43 H 1.08996 * 117.49805 * 145.01812 * 21 20 10 44 44 H 1.09001 * 117.50078 * 214.98408 * 22 20 10 45 45 H 1.09000 * 117.49587 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2496 5 6 3.5711 -0.7709 1.2120 6 6 4.0177 -1.4601 -0.0810 7 6 3.4307 -0.7092 -1.2792 8 1 3.8194 0.3090 -1.2960 9 6 3.8227 -1.4265 -2.5725 10 7 3.2060 -0.7433 -3.7175 11 6 3.9323 -1.0380 -4.9599 12 6 3.5075 -0.0680 -6.0322 13 1 2.7169 0.6413 -5.8364 14 6 4.1280 -0.0861 -7.2633 15 7 5.0910 -0.9495 -7.5017 16 14 3.6010 1.1157 -8.5927 17 1 2.5052 1.9751 -8.0769 18 1 4.7565 1.9648 -8.9788 19 1 3.1218 0.3624 -9.7793 20 6 1.7862 -1.0994 -3.8406 21 6 1.2463 -2.1843 -2.9064 22 6 1.4510 -2.4866 -4.3922 23 8 2.0065 -0.6742 -1.1664 24 1 -0.3633 0.5133 0.8903 25 1 -0.3634 0.5143 -0.8896 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1305 1.4420 -0.0005 28 1 1.6769 1.9564 -0.8897 29 1 1.6777 1.9561 0.8902 30 1 1.6443 -1.7375 1.2709 31 1 1.7149 -0.1853 2.1404 32 1 3.9393 -1.3327 2.0706 33 1 3.9703 0.2431 1.2415 34 1 3.6614 -2.4901 -0.0865 35 1 5.1059 -1.4506 -0.1428 36 1 3.4752 -2.4589 -2.5352 37 1 4.9071 -1.4119 -2.6818 38 1 3.7068 -2.0552 -5.2801 39 1 5.0040 -0.9409 -4.7861 40 1 5.3644 -1.5738 -6.8114 41 1 1.1166 -0.2794 -4.1001 42 1 1.9448 -2.6340 -2.2008 43 1 0.2214 -2.0780 -2.5510 44 1 0.5607 -2.5792 -5.0143 45 1 2.2841 -3.1351 -4.6635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714363022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:07 Heat of formation + Delta-G solvation = -37.627662 kcal Electronic energy + Delta-G solvation = -22342.874222 eV Core-core repulsion = 19360.371979 eV Total energy + Delta-G solvation = -2982.502243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20630 -39.55015 -35.55830 -35.08930 -34.44016 -33.39022 -30.30949 -28.36921 -28.00786 -26.25527 -24.79463 -23.72261 -22.81358 -22.53835 -20.55049 -20.05298 -18.71822 -17.96692 -16.85245 -16.53131 -16.46100 -15.85450 -15.70049 -15.43119 -14.96394 -14.57069 -14.35605 -13.94151 -13.80398 -13.73386 -13.44458 -13.06510 -12.94891 -12.87258 -12.71123 -12.65403 -12.50898 -12.26953 -12.05996 -11.94810 -11.92223 -11.75475 -11.63737 -11.35273 -10.93216 -10.80743 -10.54163 -10.52118 -9.99538 -9.00493 -8.64423 -6.33171 1.51999 1.61814 1.79208 2.56109 2.79610 3.06637 3.20445 3.22676 3.82833 3.90264 3.92167 4.01716 4.07779 4.15794 4.19048 4.23122 4.26040 4.41091 4.45303 4.55962 4.67129 4.72562 4.75432 4.81690 4.86555 4.87439 4.95973 4.97926 5.00836 5.06093 5.08765 5.12915 5.18727 5.20892 5.28162 5.30185 5.41034 5.46905 5.56985 5.83154 6.06156 6.44216 6.48271 6.59817 6.71732 7.45291 8.74015 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.005188 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.726921 B = 5395.288335 C = 5487.946194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.098 3.902 3 C -0.173 4.173 4 C -0.135 4.135 5 C -0.117 4.117 6 C -0.145 4.145 7 C 0.108 3.892 8 H 0.049 0.951 9 C 0.051 3.949 10 N -0.505 5.505 11 C 0.194 3.806 12 C -0.585 4.585 13 H 0.046 0.954 14 C -0.038 4.038 15 N -0.941 5.941 16 Si 1.124 2.876 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.050 3.950 21 C -0.121 4.121 22 C -0.230 4.230 23 O -0.359 6.359 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.066 0.934 38 H -0.033 1.033 39 H -0.006 1.006 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 0.235 20.066 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 C -0.230 4.230 4 C -0.172 4.172 5 C -0.155 4.155 6 C -0.183 4.183 7 C 0.050 3.950 8 H 0.067 0.933 9 C -0.077 4.077 10 N -0.228 5.228 11 C 0.068 3.932 12 C -0.623 4.623 13 H 0.065 0.935 14 C -0.235 4.235 15 N -0.579 5.579 16 Si 0.946 3.054 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.059 4.059 21 C -0.158 4.158 22 C -0.269 4.269 23 O -0.279 6.279 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.084 0.916 38 H -0.016 1.016 39 H 0.012 0.988 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.518 1.147 18.477 19.981 hybrid contribution 0.323 -1.389 1.081 1.790 sum -7.195 -0.242 19.559 20.841 Atomic orbital electron populations 1.21718 0.91962 1.02663 1.02499 1.21670 0.95251 0.91202 0.86015 1.22388 1.01457 0.96890 1.02283 1.22128 0.95780 1.01404 0.97916 1.21595 0.95932 1.01026 0.96899 1.22149 1.01121 1.00140 0.94915 1.21851 0.82598 0.97916 0.92644 0.93347 1.22394 0.98133 0.96298 0.90862 1.61925 1.01131 1.56528 1.03169 1.19631 0.91830 0.93692 0.88039 1.22235 1.21499 1.19495 0.99078 0.93534 1.27330 0.93889 1.00430 1.01847 1.70875 1.29572 1.20754 1.36746 0.82834 0.76080 0.73638 0.72844 1.19879 1.20349 1.20468 1.22250 0.89656 0.90192 1.03851 1.23075 1.02272 1.00147 0.90299 1.23295 1.02572 1.02003 0.99051 1.88218 1.19640 1.76799 1.43198 0.89540 0.93234 0.91925 0.92744 0.93769 0.90119 0.91314 0.89499 0.90130 0.91649 0.91309 0.90785 0.93895 0.91603 1.01565 0.98782 0.93853 0.89028 0.88036 0.87690 0.88812 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.85 71.98 0.64 -1.85 16 2 C 0.10 2.13 1.11 -10.76 -0.01 2.12 16 3 C -0.17 -3.82 7.94 71.98 0.57 -3.25 16 4 C -0.13 -2.32 4.92 30.68 0.15 -2.17 16 5 C -0.12 -2.08 5.71 30.71 0.18 -1.90 16 6 C -0.14 -3.27 5.42 30.69 0.17 -3.10 16 7 C 0.11 3.22 2.49 30.63 0.08 3.30 16 8 H 0.05 1.59 6.34 -2.39 -0.02 1.57 16 9 C 0.05 1.90 4.55 86.30 0.39 2.29 16 10 N -0.51 -23.00 4.61 -875.53 -4.04 -27.04 16 11 C 0.19 10.65 3.93 85.56 0.34 10.99 16 12 C -0.58 -34.82 8.86 25.60 0.23 -34.60 16 13 H 0.05 2.80 7.73 -2.91 -0.02 2.78 16 14 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 15 N -0.94 -59.63 13.65 21.45 0.29 -59.34 16 16 Si 1.12 52.54 29.90 68.60 2.05 54.59 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 C 0.05 2.06 4.96 44.92 0.22 2.28 16 21 C -0.12 -3.97 7.07 30.60 0.22 -3.76 16 22 C -0.23 -9.04 9.49 30.59 0.29 -8.75 16 23 O -0.36 -10.25 5.45 -148.98 -0.81 -11.06 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.27 4.98 -2.38 -0.01 1.26 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 1.17 6.63 -2.38 -0.02 1.15 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.55 5.57 -2.39 -0.01 1.54 16 37 H 0.07 2.49 7.63 -2.39 -0.02 2.47 16 38 H -0.03 -1.92 6.15 -2.39 -0.01 -1.93 16 39 H -0.01 -0.34 7.38 -2.39 -0.02 -0.36 16 40 H 0.25 16.21 7.19 -92.71 -0.67 15.55 16 41 H 0.09 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.10 3.27 4.94 -2.39 -0.01 3.26 16 43 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.06 2.75 6.80 -2.39 -0.02 2.74 16 Total: -1.00 -67.53 332.86 2.45 -65.08 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.04 Total: 17.98 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 3.91 Total: -40.22 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.75 Total: -86.38 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.81 Total: -11.06 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.05 Total: 54.59 kcal Total: -67.53 2.45 -65.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714363022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.456 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds