Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00276 * 2 1 4 4 C 1.46905 * 111.00206 * 123.95581 * 2 1 3 5 5 C 1.52996 * 109.46181 * 60.01963 * 4 2 1 6 6 C 1.52997 * 109.46223 * 179.97438 * 4 2 1 7 7 C 1.53039 * 109.44422 * 180.24885 * 6 4 2 8 8 C 1.52819 * 109.47111 * 300.38269 * 7 6 4 9 9 C 1.54232 * 109.40632 * 299.11884 * 8 7 6 10 10 C 1.55452 * 102.24851 * 261.58085 * 9 8 7 11 11 C 1.54950 * 100.91108 * 326.10962 * 10 9 8 12 12 H 1.09007 * 110.31068 * 277.25393 * 11 10 9 13 13 C 1.50706 * 110.30901 * 155.18957 * 11 10 9 14 14 H 1.08005 * 119.99758 * 1.38588 * 13 11 10 15 15 C 1.37871 * 120.00102 * 181.38473 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 O 1.43046 * 110.04619 * 180.88011 * 8 7 6 22 22 C 1.52811 * 110.08332 * 59.39774 * 8 7 6 23 23 C 1.53001 * 109.46126 * 300.04665 * 4 2 1 24 24 H 1.09002 * 109.46704 * 296.04724 * 1 2 3 25 25 H 1.09004 * 109.47190 * 56.04646 * 1 2 3 26 26 H 1.09000 * 109.46837 * 176.04422 * 1 2 3 27 27 H 1.09002 * 109.47394 * 183.95422 * 3 2 1 28 28 H 1.09004 * 109.46912 * 303.95763 * 3 2 1 29 29 H 1.09004 * 109.46785 * 63.95258 * 3 2 1 30 30 H 1.08996 * 109.46896 * 179.97438 * 5 4 2 31 31 H 1.09011 * 109.46937 * 299.97885 * 5 4 2 32 32 H 1.08996 * 109.47518 * 59.97818 * 5 4 2 33 33 H 1.09004 * 109.47742 * 60.26141 * 6 4 2 34 34 H 1.09003 * 109.47687 * 300.23989 * 6 4 2 35 35 H 1.08997 * 109.47271 * 180.38026 * 7 6 4 36 36 H 1.09006 * 109.47315 * 60.38233 * 7 6 4 37 37 H 1.08994 * 110.85831 * 19.82774 * 9 8 7 38 38 H 1.08996 * 110.85832 * 143.27433 * 9 8 7 39 39 H 1.09007 * 111.20741 * 208.17659 * 10 9 8 40 40 H 1.08998 * 111.08424 * 83.99488 * 10 9 8 41 41 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 42 42 H 1.08998 * 109.47232 * 60.61642 * 22 8 7 43 43 H 1.09001 * 109.47375 * 180.61299 * 22 8 7 44 44 H 1.09004 * 109.47020 * 299.75632 * 23 4 2 45 45 H 1.08998 * 109.47026 * 59.76263 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.5052 -2.2126 1.0487 6 6 3.5249 -0.7436 1.1031 7 6 4.0730 -1.5469 2.2848 8 6 3.5756 -0.9326 3.5928 9 6 4.0825 0.5200 3.7020 10 6 5.3273 0.3667 4.6204 11 6 4.8679 -0.7871 5.5470 12 1 4.2496 -0.3990 6.3565 13 6 6.0624 -1.5163 6.1061 14 1 7.0607 -1.1885 5.8562 15 6 5.8809 -2.6019 6.9364 16 7 4.6653 -3.0014 7.2403 17 14 7.3617 -3.5061 7.6287 18 1 6.9005 -4.6269 8.4868 19 1 8.1812 -4.0416 6.5121 20 1 8.1804 -2.5681 8.4382 21 8 4.0977 -1.6623 4.7069 22 6 2.0480 -0.9419 3.6294 23 6 1.5039 -0.1407 2.4445 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.8962 -2.7812 1.8924 31 1 0.4155 -2.2290 1.0730 32 1 1.8546 -2.6581 0.1173 33 1 3.8749 0.2865 1.1705 34 1 3.8739 -1.1859 0.1700 35 1 5.1625 -1.5256 2.2646 36 1 3.7284 -2.5786 2.2139 37 1 4.3667 0.9064 2.7233 38 1 3.3318 1.1591 4.1667 39 1 5.5119 1.2778 5.1897 40 1 6.2071 0.0810 4.0440 41 1 3.8965 -2.5320 6.8805 42 1 1.6893 -1.9693 3.5680 43 1 1.7041 -0.4921 4.5608 44 1 1.8563 0.8888 2.5099 45 1 0.4142 -0.1538 2.4662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715288962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = -52.112856 kcal Electronic energy + Delta-G solvation = -22581.240247 eV Core-core repulsion = 19598.109878 eV Total energy + Delta-G solvation = -2983.130368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54583 -38.10019 -34.72505 -32.52569 -31.12428 -30.77504 -29.98721 -28.13381 -26.36605 -25.37690 -23.81367 -22.77451 -22.47349 -20.59290 -19.61776 -17.29627 -16.97395 -16.36768 -15.60708 -15.09114 -14.83407 -14.72162 -14.34680 -13.69848 -13.54148 -13.22345 -13.03591 -12.95689 -12.36840 -12.18900 -12.08631 -11.90513 -11.71045 -11.67878 -11.35462 -11.28659 -10.95413 -10.80010 -10.72301 -10.58451 -10.43300 -10.37584 -10.35746 -10.03500 -9.67491 -9.52274 -8.77234 -8.44363 -8.24922 -7.92726 -6.32458 -4.09902 3.45673 3.48403 3.66729 3.88960 4.55590 4.68446 4.79196 4.92956 5.07302 5.18868 5.26223 5.35850 5.38475 5.46342 5.47849 5.49214 5.53545 5.58076 5.68673 5.72491 5.77565 5.83297 5.85960 5.95395 6.00539 6.08367 6.09942 6.13143 6.21597 6.24158 6.41403 6.44457 6.51096 6.55554 6.59748 6.72358 6.83116 6.91809 7.05708 7.11108 7.38735 8.13335 8.36672 8.65167 8.92160 9.72947 11.09167 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.005058 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768758 B = 5534.461337 C = 5723.086837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.017 3.983 4 C 0.111 3.889 5 C -0.144 4.144 6 C -0.105 4.105 7 C -0.116 4.116 8 C 0.109 3.891 9 C -0.148 4.148 10 C -0.139 4.139 11 C 0.194 3.806 12 H 0.017 0.983 13 C -0.608 4.608 14 H 0.054 0.946 15 C 0.032 3.968 16 N -0.892 5.892 17 Si 1.068 2.932 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.288 1.288 21 O -0.366 6.366 22 C -0.116 4.116 23 C -0.141 4.141 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.279 0.721 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 6.960 -13.351 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.259 5.259 3 C -0.131 4.131 4 C 0.022 3.978 5 C -0.201 4.201 6 C -0.142 4.142 7 C -0.154 4.154 8 C 0.068 3.932 9 C -0.186 4.186 10 C -0.177 4.177 11 C 0.139 3.861 12 H 0.035 0.965 13 C -0.646 4.646 14 H 0.072 0.928 15 C -0.176 4.176 16 N -0.526 5.526 17 Si 0.896 3.104 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.214 1.214 21 O -0.286 6.286 22 C -0.155 4.155 23 C -0.180 4.180 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.394 5.258 -12.792 15.237 hybrid contribution -0.770 2.061 -0.331 2.225 sum -7.163 7.319 -13.123 16.646 Atomic orbital electron populations 1.22456 0.88110 1.02274 1.00209 1.62293 1.07480 1.13467 1.42630 1.22463 1.01218 0.89240 1.00200 1.21055 0.95185 0.93912 0.87608 1.22000 1.00525 0.94937 1.02623 1.21700 0.93144 1.00744 0.98643 1.21755 1.00831 0.99690 0.93123 1.21581 0.91800 0.90750 0.89044 1.23236 0.98394 0.97041 0.99928 1.23203 0.96854 0.99735 0.97873 1.20663 0.90366 0.87079 0.87995 0.96535 1.21983 0.91800 1.18572 1.32209 0.92809 1.25834 1.02161 0.95329 0.94281 1.70668 0.98853 1.40498 1.42607 0.83584 0.74280 0.76268 0.76289 1.20729 1.21368 1.21448 1.88741 1.69043 1.35961 1.34904 1.21793 0.96122 1.00502 0.97040 1.22171 1.00040 1.00050 0.95766 0.95308 0.91920 0.91128 0.90999 0.91901 0.95325 0.90939 0.92954 0.92150 0.91698 0.91447 0.91474 0.91387 0.91498 0.92134 0.92237 0.91588 0.90961 0.91395 0.92209 0.91863 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.82 60.06 0.53 0.71 16 2 N -0.54 -6.28 4.83 -235.40 -1.14 -7.42 16 3 C 0.02 0.18 8.80 60.07 0.53 0.71 16 4 C 0.11 1.44 0.45 -131.60 -0.06 1.38 16 5 C -0.14 -1.84 7.53 37.16 0.28 -1.56 16 6 C -0.10 -1.46 4.14 -26.71 -0.11 -1.57 16 7 C -0.12 -2.01 4.80 -26.80 -0.13 -2.13 16 8 C 0.11 2.10 0.99 -90.17 -0.09 2.01 16 9 C -0.15 -2.65 4.79 -24.78 -0.12 -2.77 16 10 C -0.14 -2.94 6.54 -24.40 -0.16 -3.10 16 11 C 0.19 5.04 2.80 -26.85 -0.08 4.97 16 12 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 13 C -0.61 -17.52 8.80 -34.44 -0.30 -17.83 16 14 H 0.05 1.52 7.76 -52.48 -0.41 1.11 16 15 C 0.03 0.94 5.42 -17.82 -0.10 0.84 16 16 N -0.89 -27.68 13.57 55.43 0.75 -26.93 16 17 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 O -0.37 -9.33 9.33 -35.23 -0.33 -9.65 16 22 C -0.12 -1.98 4.66 -26.81 -0.13 -2.11 16 23 C -0.14 -1.94 3.83 -26.71 -0.10 -2.04 16 24 H 0.03 0.29 6.30 -51.93 -0.33 -0.03 16 25 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.07 0.70 6.30 -51.93 -0.33 0.37 16 27 H 0.07 0.77 6.24 -51.93 -0.32 0.44 16 28 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.03 0.31 6.41 -51.93 -0.33 -0.03 16 30 H 0.07 1.03 4.81 -51.93 -0.25 0.78 16 31 H 0.05 0.61 6.41 -51.92 -0.33 0.28 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.88 4.36 -51.93 -0.23 0.65 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.21 6.44 -51.93 -0.33 0.87 16 37 H 0.07 1.05 5.81 -51.93 -0.30 0.75 16 38 H 0.06 1.03 7.55 -51.93 -0.39 0.64 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.28 8.76 6.61 -40.82 -0.27 8.49 16 42 H 0.07 1.19 6.45 -51.93 -0.33 0.85 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.87 5.43 -51.93 -0.28 0.58 16 45 H 0.06 0.77 6.39 -51.93 -0.33 0.44 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -30.94 317.57 -8.40 -39.34 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.36 Total: 1.95 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -0.03 Total: -22.48 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.39 Total: -34.34 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.33 Total: -9.65 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.94 -8.40 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715288962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.770 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds