Wall clock time and date at job start Mon Mar 30 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00276 * 2 1 4 4 C 1.46905 * 111.00206 * 123.95581 * 2 1 3 5 5 C 1.52996 * 109.46181 * 60.01963 * 4 2 1 6 6 C 1.52997 * 109.46223 * 179.97438 * 4 2 1 7 7 C 1.53039 * 109.44422 * 180.24885 * 6 4 2 8 8 C 1.52819 * 109.47111 * 300.38269 * 7 6 4 9 9 C 1.54232 * 109.40632 * 299.11884 * 8 7 6 10 10 C 1.55452 * 102.24851 * 261.58085 * 9 8 7 11 11 C 1.54950 * 100.91108 * 326.10962 * 10 9 8 12 12 H 1.09007 * 110.31068 * 277.25393 * 11 10 9 13 13 C 1.50706 * 110.30901 * 155.18957 * 11 10 9 14 14 H 1.08005 * 119.99758 * 1.38588 * 13 11 10 15 15 C 1.37871 * 120.00102 * 181.38473 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 O 1.43046 * 110.04619 * 180.88011 * 8 7 6 22 22 C 1.52811 * 110.08332 * 59.39774 * 8 7 6 23 23 C 1.53001 * 109.46126 * 300.04665 * 4 2 1 24 24 H 1.09002 * 109.46704 * 296.04724 * 1 2 3 25 25 H 1.09004 * 109.47190 * 56.04646 * 1 2 3 26 26 H 1.09000 * 109.46837 * 176.04422 * 1 2 3 27 27 H 1.09002 * 109.47394 * 183.95422 * 3 2 1 28 28 H 1.09004 * 109.46912 * 303.95763 * 3 2 1 29 29 H 1.09004 * 109.46785 * 63.95258 * 3 2 1 30 30 H 1.08996 * 109.46896 * 179.97438 * 5 4 2 31 31 H 1.09011 * 109.46937 * 299.97885 * 5 4 2 32 32 H 1.08996 * 109.47518 * 59.97818 * 5 4 2 33 33 H 1.09004 * 109.47742 * 60.26141 * 6 4 2 34 34 H 1.09003 * 109.47687 * 300.23989 * 6 4 2 35 35 H 1.08997 * 109.47271 * 180.38026 * 7 6 4 36 36 H 1.09006 * 109.47315 * 60.38233 * 7 6 4 37 37 H 1.08994 * 110.85831 * 19.82774 * 9 8 7 38 38 H 1.08996 * 110.85832 * 143.27433 * 9 8 7 39 39 H 1.09007 * 111.20741 * 208.17659 * 10 9 8 40 40 H 1.08998 * 111.08424 * 83.99488 * 10 9 8 41 41 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 42 42 H 1.08998 * 109.47232 * 60.61642 * 22 8 7 43 43 H 1.09001 * 109.47375 * 180.61299 * 22 8 7 44 44 H 1.09004 * 109.47020 * 299.75632 * 23 4 2 45 45 H 1.08998 * 109.47026 * 59.76263 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.5052 -2.2126 1.0487 6 6 3.5249 -0.7436 1.1031 7 6 4.0730 -1.5469 2.2848 8 6 3.5756 -0.9326 3.5928 9 6 4.0825 0.5200 3.7020 10 6 5.3273 0.3667 4.6204 11 6 4.8679 -0.7871 5.5470 12 1 4.2496 -0.3990 6.3565 13 6 6.0624 -1.5163 6.1061 14 1 7.0607 -1.1885 5.8562 15 6 5.8809 -2.6019 6.9364 16 7 4.6653 -3.0014 7.2403 17 14 7.3617 -3.5061 7.6287 18 1 6.9005 -4.6269 8.4868 19 1 8.1812 -4.0416 6.5121 20 1 8.1804 -2.5681 8.4382 21 8 4.0977 -1.6623 4.7069 22 6 2.0480 -0.9419 3.6294 23 6 1.5039 -0.1407 2.4445 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.8962 -2.7812 1.8924 31 1 0.4155 -2.2290 1.0730 32 1 1.8546 -2.6581 0.1173 33 1 3.8749 0.2865 1.1705 34 1 3.8739 -1.1859 0.1700 35 1 5.1625 -1.5256 2.2646 36 1 3.7284 -2.5786 2.2139 37 1 4.3667 0.9064 2.7233 38 1 3.3318 1.1591 4.1667 39 1 5.5119 1.2778 5.1897 40 1 6.2071 0.0810 4.0440 41 1 3.8965 -2.5320 6.8805 42 1 1.6893 -1.9693 3.5680 43 1 1.7041 -0.4921 4.5608 44 1 1.8563 0.8888 2.5099 45 1 0.4142 -0.1538 2.4662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715288962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:57 Heat of formation + Delta-G solvation = -72.008218 kcal Electronic energy + Delta-G solvation = -22582.102974 eV Core-core repulsion = 19598.109878 eV Total energy + Delta-G solvation = -2983.993096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.85296 -39.56191 -36.12693 -34.52950 -32.79859 -32.06534 -31.34496 -29.18374 -27.95360 -26.61733 -25.17141 -24.31513 -23.73988 -22.44504 -20.95354 -19.11787 -18.54842 -17.46102 -17.22177 -16.47072 -15.99412 -15.79385 -15.64985 -15.51508 -15.31833 -14.56688 -14.32717 -14.26464 -13.89720 -13.58420 -13.20570 -13.13533 -12.97649 -12.79877 -12.69400 -12.60119 -12.48146 -12.35085 -12.26061 -11.97314 -11.93513 -11.86928 -11.79080 -11.60407 -11.20863 -10.92430 -10.69471 -10.61486 -9.88512 -9.15307 -8.64987 -6.43053 1.51626 1.60718 1.79782 2.56621 2.88777 3.08311 3.41869 3.61811 3.71812 3.83468 4.00014 4.04602 4.11412 4.19737 4.27750 4.34422 4.40059 4.43674 4.53697 4.56321 4.64185 4.69393 4.72242 4.77035 4.79283 4.85534 4.89883 4.95399 4.98365 5.01033 5.04479 5.08607 5.14190 5.18021 5.21939 5.31989 5.44681 5.48112 5.52462 5.97130 6.10209 6.16105 6.19335 6.54178 6.80814 7.50736 8.75637 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.005058 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768758 B = 5534.461337 C = 5723.086837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.539 5.539 3 C 0.014 3.986 4 C 0.116 3.884 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.110 4.110 8 C 0.094 3.906 9 C -0.134 4.134 10 C -0.133 4.133 11 C 0.186 3.814 12 H -0.016 1.016 13 C -0.626 4.626 14 H 0.054 0.946 15 C -0.021 4.021 16 N -0.920 5.920 17 Si 1.117 2.883 18 H -0.283 1.283 19 H -0.272 1.272 20 H -0.265 1.265 21 O -0.401 6.401 22 C -0.111 4.111 23 C -0.130 4.130 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.262 0.738 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 8.265 -15.402 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.134 4.134 4 C 0.027 3.973 5 C -0.199 4.199 6 C -0.132 4.132 7 C -0.148 4.148 8 C 0.055 3.945 9 C -0.171 4.171 10 C -0.170 4.170 11 C 0.131 3.869 12 H 0.002 0.998 13 C -0.663 4.663 14 H 0.072 0.928 15 C -0.222 4.222 16 N -0.556 5.556 17 Si 0.938 3.062 18 H -0.209 1.209 19 H -0.197 1.197 20 H -0.190 1.190 21 O -0.322 6.322 22 C -0.149 4.149 23 C -0.169 4.169 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.371 6.594 -14.869 17.469 hybrid contribution -0.835 1.680 0.261 1.894 sum -7.206 8.274 -14.608 18.270 Atomic orbital electron populations 1.22527 0.86999 1.02751 1.00940 1.62292 1.08508 1.14134 1.41274 1.22544 1.01330 0.88589 1.00959 1.20928 0.94444 0.94154 0.87789 1.21962 1.01284 0.94761 1.01917 1.21614 0.93871 1.00566 0.97142 1.21677 0.99850 0.99716 0.93589 1.21978 0.93138 0.91440 0.87992 1.23190 0.96895 0.96197 1.00790 1.23094 0.98054 0.98296 0.97595 1.20527 0.89294 0.88524 0.88553 0.99816 1.22419 0.92841 1.18672 1.32393 0.92766 1.27405 1.03928 0.96394 0.94518 1.70805 0.99263 1.41382 1.44155 0.82971 0.71394 0.75509 0.76364 1.20886 1.19734 1.19000 1.88642 1.69508 1.37374 1.36684 1.21711 0.94574 1.00509 0.98138 1.22101 1.00715 0.99634 0.94449 0.95308 0.90302 0.90997 0.90998 0.90239 0.95362 0.93085 0.91748 0.91624 0.90633 0.90413 0.93058 0.92581 0.88433 0.91098 0.90817 0.91874 0.92806 0.92531 0.93762 0.91133 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.82 127.69 1.13 1.39 16 2 N -0.54 -10.80 4.83 -898.66 -4.34 -15.15 16 3 C 0.01 0.24 8.80 127.69 1.12 1.36 16 4 C 0.12 2.74 0.45 3.52 0.00 2.74 16 5 C -0.14 -3.43 7.53 71.98 0.54 -2.89 16 6 C -0.09 -2.42 4.14 30.61 0.13 -2.29 16 7 C -0.11 -3.78 4.80 30.55 0.15 -3.63 16 8 C 0.09 3.65 0.99 -10.50 -0.01 3.64 16 9 C -0.13 -4.58 4.79 31.86 0.15 -4.43 16 10 C -0.13 -5.57 6.54 32.10 0.21 -5.36 16 11 C 0.19 10.03 2.80 30.52 0.09 10.12 16 12 H -0.02 -0.92 8.00 -2.38 -0.02 -0.94 16 13 C -0.63 -36.97 8.80 25.60 0.23 -36.75 16 14 H 0.05 3.10 7.76 -2.91 -0.02 3.08 16 15 C -0.02 -1.28 5.42 84.65 0.46 -0.82 16 16 N -0.92 -59.29 13.57 21.45 0.29 -58.99 16 17 Si 1.12 51.67 29.90 68.60 2.05 53.72 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 O -0.40 -21.26 9.33 -148.98 -1.39 -22.65 16 22 C -0.11 -3.79 4.66 30.54 0.14 -3.65 16 23 C -0.13 -3.30 3.83 30.61 0.12 -3.18 16 24 H 0.03 0.49 6.30 -2.39 -0.02 0.48 16 25 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 26 H 0.07 1.20 6.30 -2.39 -0.02 1.18 16 27 H 0.07 1.25 6.24 -2.39 -0.01 1.23 16 28 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 29 H 0.03 0.50 6.41 -2.39 -0.02 0.48 16 30 H 0.05 1.45 4.81 -2.39 -0.01 1.44 16 31 H 0.06 1.38 6.41 -2.38 -0.02 1.36 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.79 4.36 -2.38 -0.01 1.78 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.03 6.44 -2.38 -0.02 2.02 16 37 H 0.10 2.76 5.81 -2.39 -0.01 2.75 16 38 H 0.07 2.29 7.55 -2.39 -0.02 2.28 16 39 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.06 2.66 8.04 -2.39 -0.02 2.64 16 41 H 0.26 17.38 6.61 -92.71 -0.61 16.77 16 42 H 0.06 2.04 6.45 -2.39 -0.02 2.02 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.71 5.43 -2.39 -0.01 1.70 16 45 H 0.07 1.70 6.39 -2.39 -0.02 1.69 16 Total: -1.00 -69.19 317.57 2.18 -67.01 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.12 Total: 19.80 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 4.45 Total: -43.75 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -4.05 Total: -74.14 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.39 Total: -22.65 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -69.19 2.18 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715288962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.997 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds