Wall clock time and date at job start Mon Mar 30 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99470 * 2 1 4 4 C 1.46892 * 111.00302 * 123.95294 * 2 1 3 5 5 H 1.09006 * 109.49224 * 55.03026 * 4 2 1 6 6 C 1.53010 * 109.48271 * 295.00307 * 4 2 1 7 7 C 1.53006 * 109.56340 * 179.53576 * 6 4 2 8 8 C 1.53109 * 109.41053 * 60.47794 * 7 6 4 9 9 C 1.52330 * 109.55642 * 301.02334 * 8 7 6 10 10 C 1.54434 * 110.08710 * 296.29187 * 9 8 7 11 11 C 1.54906 * 102.02012 * 277.62211 * 10 9 8 12 12 C 1.54136 * 104.21663 * 339.65298 * 11 10 9 13 13 C 1.52996 * 109.87381 * 117.54848 * 12 11 10 14 14 C 1.50701 * 109.86660 * 238.52721 * 12 11 10 15 15 H 1.08001 * 120.00328 * 359.97438 * 14 12 11 16 16 C 1.37883 * 119.99522 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99377 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00297 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47117 * 90.00039 * 18 16 14 20 20 H 1.48501 * 109.46974 * 209.99839 * 18 16 14 21 21 H 1.48497 * 109.47171 * 330.00039 * 18 16 14 22 22 O 1.43699 * 110.58744 * 181.58442 * 9 8 7 23 23 C 1.52320 * 111.00026 * 58.44191 * 9 8 7 24 24 H 1.09004 * 109.47099 * 296.04561 * 1 2 3 25 25 H 1.09002 * 109.47575 * 56.05030 * 1 2 3 26 26 H 1.09005 * 109.47000 * 176.04558 * 1 2 3 27 27 H 1.08999 * 109.46821 * 183.95459 * 3 2 1 28 28 H 1.08996 * 109.47110 * 303.94912 * 3 2 1 29 29 H 1.08995 * 109.47490 * 63.95833 * 3 2 1 30 30 H 1.08997 * 109.45364 * 59.50552 * 6 4 2 31 31 H 1.09002 * 109.43712 * 299.54917 * 6 4 2 32 32 H 1.09002 * 109.47762 * 300.49356 * 7 6 4 33 33 H 1.09004 * 109.47876 * 180.46175 * 7 6 4 34 34 H 1.09000 * 109.45784 * 61.04722 * 8 7 6 35 35 H 1.08994 * 109.45361 * 181.00144 * 8 7 6 36 36 H 1.09000 * 110.91993 * 35.80489 * 10 9 8 37 37 H 1.08997 * 110.91831 * 159.40964 * 10 9 8 38 38 H 1.09006 * 110.47951 * 98.33167 * 11 10 9 39 39 H 1.09001 * 110.48392 * 220.96725 * 11 10 9 40 40 H 1.09001 * 109.47435 * 50.90442 * 13 12 11 41 41 H 1.08997 * 109.47741 * 170.90770 * 13 12 11 42 42 H 1.09005 * 109.47219 * 290.91271 * 13 12 11 43 43 H 0.97004 * 119.99520 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.45944 * 181.53438 * 23 9 8 45 45 H 1.08998 * 109.44735 * 61.57495 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.5760 -1.7719 1.1240 6 6 1.6092 -0.0696 2.4441 7 6 2.1468 -0.8722 3.6307 8 6 3.6730 -0.9541 3.5399 9 6 4.0708 -1.6193 2.2285 10 6 3.5615 -3.0769 2.1973 11 6 4.6601 -3.8197 2.9979 12 6 5.8767 -2.8753 2.9371 13 6 6.2492 -2.4154 4.3480 14 6 7.0456 -3.5860 2.3050 15 1 6.9418 -4.6095 1.9763 16 6 8.2477 -2.9294 2.1463 17 7 9.2679 -3.5499 1.5951 18 14 8.4275 -1.1594 2.7154 19 1 8.8860 -1.1377 4.1277 20 1 9.4229 -0.4634 1.8611 21 1 7.1165 -0.4699 2.6100 22 8 5.4997 -1.7410 2.1367 23 6 3.5211 -0.8473 1.0361 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0826 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 0.5234 -0.0032 2.5128 31 1 2.0362 0.9331 2.4608 32 1 1.7268 -1.8778 3.6095 33 1 1.8639 -0.3794 4.5609 34 1 4.0936 0.0507 3.5795 35 1 4.0554 -1.5407 4.3751 36 1 2.5943 -3.1619 2.6926 37 1 3.5067 -3.4481 1.1740 38 1 4.3444 -3.9690 4.0305 39 1 4.8947 -4.7748 2.5279 40 1 6.3400 -3.2835 5.0010 41 1 7.1996 -1.8827 4.3176 42 1 5.4732 -1.7525 4.7308 43 1 10.1135 -3.0879 1.4831 44 1 3.7968 -1.3589 0.1139 45 1 3.9389 0.1594 1.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715290492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:06 Heat of formation + Delta-G solvation = -31.608683 kcal Electronic energy + Delta-G solvation = -22772.364656 eV Core-core repulsion = 19790.123415 eV Total energy + Delta-G solvation = -2982.241240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35187 -38.14453 -34.90612 -32.69923 -31.26704 -30.76076 -29.46614 -28.20909 -27.49629 -25.08505 -24.24998 -22.82700 -22.04098 -20.40752 -19.37080 -18.24567 -16.75225 -16.30999 -15.31984 -15.11124 -14.85279 -14.62345 -14.29601 -13.81062 -13.53325 -13.39340 -13.24329 -12.61965 -12.47608 -12.30300 -12.17360 -12.05189 -11.95135 -11.72421 -11.46628 -11.23857 -11.00941 -10.90309 -10.67944 -10.63713 -10.30796 -10.11686 -10.00459 -9.77938 -9.63134 -9.32477 -8.89556 -8.49603 -8.27789 -8.19929 -6.05728 -4.12690 3.38672 3.49530 3.72113 3.91348 4.55929 4.58414 4.83569 5.03635 5.06136 5.16422 5.19363 5.33766 5.38710 5.40945 5.47504 5.50729 5.57121 5.61923 5.64972 5.75755 5.76998 5.80243 5.94478 5.96815 6.04278 6.06394 6.12857 6.18616 6.33174 6.39809 6.42595 6.50533 6.57234 6.62872 6.72458 6.81099 6.89825 6.94771 7.05805 7.07581 7.29178 7.74480 8.35117 8.51084 8.95696 9.59413 11.05055 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.006407 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.930391 B = 4368.994703 C = 4607.846594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.016 3.984 4 C 0.089 3.911 5 H 0.084 0.916 6 C -0.152 4.152 7 C -0.112 4.112 8 C -0.142 4.142 9 C 0.102 3.898 10 C -0.143 4.143 11 C -0.129 4.129 12 C 0.193 3.807 13 C -0.169 4.169 14 C -0.511 4.511 15 H 0.077 0.923 16 C 0.082 3.918 17 N -0.894 5.894 18 Si 0.880 3.120 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.224 1.224 22 O -0.354 6.354 23 C -0.095 4.095 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.264 0.736 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.372 7.653 1.896 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.132 4.132 4 C -0.020 4.020 5 H 0.102 0.898 6 C -0.191 4.191 7 C -0.150 4.150 8 C -0.180 4.180 9 C 0.061 3.939 10 C -0.180 4.180 11 C -0.167 4.167 12 C 0.155 3.845 13 C -0.226 4.226 14 C -0.548 4.548 15 H 0.095 0.905 16 C -0.121 4.121 17 N -0.532 5.532 18 Si 0.711 3.289 19 H -0.218 1.218 20 H -0.232 1.232 21 H -0.147 1.147 22 O -0.274 6.274 23 C -0.133 4.133 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.907 7.561 1.261 18.564 hybrid contribution -0.049 1.169 1.174 1.658 sum -16.956 8.731 2.435 19.227 Atomic orbital electron populations 1.22391 0.87920 1.02085 1.00206 1.62213 1.07382 1.13937 1.42677 1.22482 1.01616 0.89027 1.00071 1.21742 0.95732 0.97348 0.87134 0.89771 1.22226 1.00126 1.00309 0.96435 1.21507 0.96192 1.00144 0.97185 1.22203 0.94826 1.01566 0.99355 1.21628 0.85528 0.93854 0.92879 1.23110 0.98159 0.95882 1.00891 1.22884 0.94999 1.00200 0.98602 1.20048 0.93476 0.82895 0.88100 1.22811 1.00337 1.00439 0.98976 1.20985 0.92681 0.99596 1.41516 0.90452 1.25062 0.95470 0.98151 0.93465 1.69923 1.02568 1.37618 1.43063 0.87028 0.79425 0.85917 0.76564 1.21761 1.23224 1.14677 1.89229 1.16546 1.50738 1.70862 1.21390 0.92487 1.00902 0.98552 0.95520 0.91710 0.91510 0.90704 0.91861 0.95367 0.92347 0.91776 0.91667 0.92383 0.92036 0.90189 0.91808 0.91209 0.92825 0.91058 0.92620 0.93482 0.93673 0.92645 0.90465 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.31 60.06 0.56 0.78 16 2 N -0.54 -6.62 5.01 -243.10 -1.22 -7.83 16 3 C 0.02 0.18 8.82 60.07 0.53 0.71 16 4 C 0.09 1.16 2.04 -67.65 -0.14 1.02 16 5 H 0.08 1.11 7.32 -51.93 -0.38 0.73 16 6 C -0.15 -1.79 4.49 -26.72 -0.12 -1.91 16 7 C -0.11 -1.39 5.73 -26.67 -0.15 -1.54 16 8 C -0.14 -2.24 4.37 -27.02 -0.12 -2.36 16 9 C 0.10 1.83 0.88 -90.56 -0.08 1.75 16 10 C -0.14 -2.44 4.96 -24.97 -0.12 -2.57 16 11 C -0.13 -2.55 5.87 -25.13 -0.15 -2.69 16 12 C 0.19 4.51 0.65 -91.18 -0.06 4.45 16 13 C -0.17 -3.68 7.88 37.16 0.29 -3.39 16 14 C -0.51 -14.53 8.87 -34.44 -0.31 -14.83 16 15 H 0.08 2.36 7.58 -52.49 -0.40 1.96 16 16 C 0.08 2.43 5.45 -17.82 -0.10 2.33 16 17 N -0.89 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 22.83 23.97 -169.99 -4.07 18.75 16 19 H -0.29 -7.32 6.80 56.52 0.38 -6.94 16 20 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 21 H -0.22 -5.61 5.38 56.52 0.30 -5.31 16 22 O -0.35 -8.25 7.41 -35.23 -0.26 -8.51 16 23 C -0.10 -1.55 4.20 -27.02 -0.11 -1.66 16 24 H 0.03 0.25 6.43 -51.93 -0.33 -0.09 16 25 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.03 0.30 6.29 -51.93 -0.33 -0.03 16 30 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 31 H 0.06 0.78 6.41 -51.93 -0.33 0.45 16 32 H 0.06 0.78 6.29 -51.93 -0.33 0.45 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.31 4.71 -51.93 -0.24 1.06 16 36 H 0.06 0.92 5.95 -51.93 -0.31 0.61 16 37 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 38 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 39 H 0.07 1.47 7.40 -51.93 -0.38 1.09 16 40 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 41 H 0.05 1.11 3.15 -51.93 -0.16 0.95 16 42 H 0.04 0.86 4.68 -51.93 -0.24 0.62 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 45 H 0.06 1.06 6.37 -51.93 -0.33 0.73 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -30.95 309.41 -7.65 -38.59 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.46 Total: 1.33 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.91 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.44 Total: -34.91 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.26 Total: -8.51 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.07 Total: 18.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.95 -7.65 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715290492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.984 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds