Wall clock time and date at job start Mon Mar 30 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99470 * 2 1 4 4 C 1.46892 * 111.00302 * 123.95294 * 2 1 3 5 5 H 1.09006 * 109.49224 * 55.03026 * 4 2 1 6 6 C 1.53010 * 109.48271 * 295.00307 * 4 2 1 7 7 C 1.53006 * 109.56340 * 179.53576 * 6 4 2 8 8 C 1.53109 * 109.41053 * 60.47794 * 7 6 4 9 9 C 1.52330 * 109.55642 * 301.02334 * 8 7 6 10 10 C 1.54434 * 110.08710 * 296.29187 * 9 8 7 11 11 C 1.54906 * 102.02012 * 277.62211 * 10 9 8 12 12 C 1.54136 * 104.21663 * 339.65298 * 11 10 9 13 13 C 1.52996 * 109.87381 * 117.54848 * 12 11 10 14 14 C 1.50701 * 109.86660 * 238.52721 * 12 11 10 15 15 H 1.08001 * 120.00328 * 359.97438 * 14 12 11 16 16 C 1.37883 * 119.99522 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99377 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00297 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47117 * 90.00039 * 18 16 14 20 20 H 1.48501 * 109.46974 * 209.99839 * 18 16 14 21 21 H 1.48497 * 109.47171 * 330.00039 * 18 16 14 22 22 O 1.43699 * 110.58744 * 181.58442 * 9 8 7 23 23 C 1.52320 * 111.00026 * 58.44191 * 9 8 7 24 24 H 1.09004 * 109.47099 * 296.04561 * 1 2 3 25 25 H 1.09002 * 109.47575 * 56.05030 * 1 2 3 26 26 H 1.09005 * 109.47000 * 176.04558 * 1 2 3 27 27 H 1.08999 * 109.46821 * 183.95459 * 3 2 1 28 28 H 1.08996 * 109.47110 * 303.94912 * 3 2 1 29 29 H 1.08995 * 109.47490 * 63.95833 * 3 2 1 30 30 H 1.08997 * 109.45364 * 59.50552 * 6 4 2 31 31 H 1.09002 * 109.43712 * 299.54917 * 6 4 2 32 32 H 1.09002 * 109.47762 * 300.49356 * 7 6 4 33 33 H 1.09004 * 109.47876 * 180.46175 * 7 6 4 34 34 H 1.09000 * 109.45784 * 61.04722 * 8 7 6 35 35 H 1.08994 * 109.45361 * 181.00144 * 8 7 6 36 36 H 1.09000 * 110.91993 * 35.80489 * 10 9 8 37 37 H 1.08997 * 110.91831 * 159.40964 * 10 9 8 38 38 H 1.09006 * 110.47951 * 98.33167 * 11 10 9 39 39 H 1.09001 * 110.48392 * 220.96725 * 11 10 9 40 40 H 1.09001 * 109.47435 * 50.90442 * 13 12 11 41 41 H 1.08997 * 109.47741 * 170.90770 * 13 12 11 42 42 H 1.09005 * 109.47219 * 290.91271 * 13 12 11 43 43 H 0.97004 * 119.99520 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.45944 * 181.53438 * 23 9 8 45 45 H 1.08998 * 109.44735 * 61.57495 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.5760 -1.7719 1.1240 6 6 1.6092 -0.0696 2.4441 7 6 2.1468 -0.8722 3.6307 8 6 3.6730 -0.9541 3.5399 9 6 4.0708 -1.6193 2.2285 10 6 3.5615 -3.0769 2.1973 11 6 4.6601 -3.8197 2.9979 12 6 5.8767 -2.8753 2.9371 13 6 6.2492 -2.4154 4.3480 14 6 7.0456 -3.5860 2.3050 15 1 6.9418 -4.6095 1.9763 16 6 8.2477 -2.9294 2.1463 17 7 9.2679 -3.5499 1.5951 18 14 8.4275 -1.1594 2.7154 19 1 8.8860 -1.1377 4.1277 20 1 9.4229 -0.4634 1.8611 21 1 7.1165 -0.4699 2.6100 22 8 5.4997 -1.7410 2.1367 23 6 3.5211 -0.8473 1.0361 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0826 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 0.5234 -0.0032 2.5128 31 1 2.0362 0.9331 2.4608 32 1 1.7268 -1.8778 3.6095 33 1 1.8639 -0.3794 4.5609 34 1 4.0936 0.0507 3.5795 35 1 4.0554 -1.5407 4.3751 36 1 2.5943 -3.1619 2.6926 37 1 3.5067 -3.4481 1.1740 38 1 4.3444 -3.9690 4.0305 39 1 4.8947 -4.7748 2.5279 40 1 6.3400 -3.2835 5.0010 41 1 7.1996 -1.8827 4.3176 42 1 5.4732 -1.7525 4.7308 43 1 10.1135 -3.0879 1.4831 44 1 3.7968 -1.3589 0.1139 45 1 3.9389 0.1594 1.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715290492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:06 Heat of formation + Delta-G solvation = -53.059385 kcal Electronic energy + Delta-G solvation = -22773.294828 eV Core-core repulsion = 19790.123415 eV Total energy + Delta-G solvation = -2983.171413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70817 -39.38274 -36.16290 -34.65569 -33.04964 -32.17085 -30.72643 -29.47586 -28.40534 -27.11796 -25.24619 -24.36263 -23.13604 -21.61489 -21.11154 -19.48930 -18.79573 -17.59349 -16.85920 -16.43968 -16.00354 -15.68279 -15.58689 -15.30127 -14.93264 -14.69141 -14.66775 -14.56759 -13.98585 -13.71857 -13.47738 -13.30441 -13.00917 -12.82853 -12.61922 -12.57154 -12.46292 -12.28611 -12.07057 -11.97532 -11.84763 -11.74012 -11.59759 -11.34444 -11.09035 -10.90370 -10.67441 -10.64833 -9.97925 -9.12652 -8.33925 -6.43527 1.29696 1.39036 1.65050 2.39818 2.83866 3.07667 3.42036 3.80380 3.89433 4.02218 4.05353 4.11760 4.21546 4.28288 4.32250 4.43734 4.49841 4.50288 4.54573 4.55717 4.66313 4.71576 4.74147 4.82629 4.86108 4.90099 4.98412 5.01672 5.05262 5.07145 5.14647 5.16956 5.22955 5.25680 5.31929 5.42121 5.49916 5.56583 5.61340 5.69925 6.13917 6.20482 6.26566 6.53906 6.81910 7.33140 8.80853 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.006407 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.930391 B = 4368.994703 C = 4607.846594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.558 5.558 3 C 0.017 3.983 4 C 0.097 3.903 5 H 0.087 0.913 6 C -0.146 4.146 7 C -0.105 4.105 8 C -0.138 4.138 9 C 0.093 3.907 10 C -0.132 4.132 11 C -0.129 4.129 12 C 0.188 3.812 13 C -0.168 4.168 14 C -0.516 4.516 15 H 0.037 0.963 16 C 0.026 3.974 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.277 1.277 20 H -0.313 1.313 21 H -0.211 1.211 22 O -0.387 6.387 23 C -0.091 4.091 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.078 0.922 43 H 0.264 0.736 44 H 0.050 0.950 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.845 9.420 3.578 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.131 4.131 4 C -0.011 4.011 5 H 0.105 0.895 6 C -0.185 4.185 7 C -0.143 4.143 8 C -0.176 4.176 9 C 0.053 3.947 10 C -0.169 4.169 11 C -0.167 4.167 12 C 0.150 3.850 13 C -0.224 4.224 14 C -0.553 4.553 15 H 0.055 0.945 16 C -0.172 4.172 17 N -0.585 5.585 18 Si 0.769 3.231 19 H -0.204 1.204 20 H -0.243 1.243 21 H -0.134 1.134 22 O -0.308 6.308 23 C -0.129 4.129 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.413 9.327 2.953 22.636 hybrid contribution 0.977 0.549 0.556 1.251 sum -19.436 9.876 3.509 22.082 Atomic orbital electron populations 1.22444 0.86058 1.02742 1.01250 1.62165 1.09105 1.14340 1.42515 1.22464 1.00521 0.88909 1.01156 1.21597 0.92953 0.98039 0.88528 0.89537 1.22175 1.01432 0.99759 0.95088 1.21488 0.93225 1.01219 0.98403 1.22132 0.97585 1.00614 0.97247 1.21971 0.82759 0.94910 0.95082 1.23074 0.98968 0.94629 1.00279 1.22835 0.94531 0.98646 1.00660 1.19970 0.92998 0.83685 0.88327 1.22769 1.00346 1.01368 0.97953 1.21367 0.94889 0.98449 1.40616 0.94504 1.25878 0.95292 1.02181 0.93874 1.70064 1.03306 1.39447 1.45635 0.86080 0.79462 0.81165 0.76357 1.20436 1.24256 1.13361 1.89103 1.20262 1.50152 1.71252 1.21337 0.95261 0.99685 0.96631 0.94389 0.90718 0.91091 0.92575 0.90551 0.94441 0.90104 0.92086 0.90557 0.90203 0.92742 0.90489 0.88000 0.92392 0.89923 0.93119 0.91646 0.95436 0.90350 0.92699 0.93147 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.31 127.69 1.19 1.55 16 2 N -0.56 -12.29 5.01 -923.04 -4.62 -16.92 16 3 C 0.02 0.36 8.82 127.69 1.13 1.48 16 4 C 0.10 2.27 2.04 44.96 0.09 2.36 16 5 H 0.09 1.99 7.32 -2.38 -0.02 1.97 16 6 C -0.15 -2.80 4.49 30.60 0.14 -2.66 16 7 C -0.11 -2.08 5.73 30.63 0.18 -1.91 16 8 C -0.14 -3.87 4.37 30.41 0.13 -3.73 16 9 C 0.09 3.17 0.88 -10.75 -0.01 3.16 16 10 C -0.13 -4.24 4.96 31.73 0.16 -4.09 16 11 C -0.13 -4.94 5.87 31.63 0.19 -4.75 16 12 C 0.19 8.76 0.65 -11.16 -0.01 8.75 16 13 C -0.17 -7.00 7.88 71.98 0.57 -6.43 16 14 C -0.52 -30.40 8.87 25.60 0.23 -30.18 16 15 H 0.04 2.39 7.58 -2.91 -0.02 2.37 16 16 C 0.03 1.60 5.45 84.66 0.46 2.06 16 17 N -0.94 -61.46 13.96 21.45 0.30 -61.16 16 18 Si 0.94 48.30 23.97 68.60 1.64 49.94 16 19 H -0.28 -13.50 6.80 99.48 0.68 -12.82 16 20 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 21 H -0.21 -10.30 5.38 99.48 0.54 -9.77 16 22 O -0.39 -17.87 7.41 -148.98 -1.10 -18.98 16 23 C -0.09 -2.86 4.20 30.41 0.13 -2.74 16 24 H 0.04 0.53 6.43 -2.38 -0.02 0.52 16 25 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.06 1.34 6.30 -2.39 -0.02 1.32 16 28 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 29 H 0.04 0.69 6.29 -2.39 -0.02 0.67 16 30 H 0.08 1.26 6.50 -2.39 -0.02 1.24 16 31 H 0.06 1.24 6.41 -2.39 -0.02 1.23 16 32 H 0.08 1.37 6.29 -2.39 -0.01 1.36 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 2.19 4.71 -2.39 -0.01 2.18 16 36 H 0.10 2.50 5.95 -2.39 -0.01 2.48 16 37 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 38 H 0.08 2.66 7.68 -2.38 -0.02 2.64 16 39 H 0.05 2.12 7.40 -2.39 -0.02 2.10 16 40 H 0.06 2.54 8.11 -2.39 -0.02 2.52 16 41 H 0.03 1.25 3.15 -2.39 -0.01 1.24 16 42 H 0.08 2.73 4.68 -2.38 -0.01 2.72 16 43 H 0.26 16.22 8.31 -92.70 -0.77 15.44 16 44 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 45 H 0.06 1.82 6.37 -2.39 -0.02 1.81 16 Total: -1.00 -70.17 309.41 1.55 -68.62 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.77 Total: 15.61 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.56 Total: -37.12 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -4.32 Total: -78.08 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.10 Total: -18.98 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.64 Total: 49.94 kcal Total: -70.17 1.55 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715290492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds