Wall clock time and date at job start Mon Mar 30 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 111.00143 * 2 1 4 4 C 1.46901 * 110.99463 * 123.95829 * 2 1 3 5 5 H 1.08995 * 109.47881 * 55.01502 * 4 2 1 6 6 C 1.52995 * 109.47702 * 294.99261 * 4 2 1 7 7 C 1.53008 * 109.56399 * 179.64660 * 6 4 2 8 8 C 1.53089 * 109.41625 * 60.36897 * 7 6 4 9 9 C 1.52522 * 109.50616 * 300.75114 * 8 7 6 10 10 C 1.55112 * 109.66459 * 297.79074 * 9 8 7 11 11 C 1.55368 * 100.64836 * 204.89919 * 10 9 8 12 12 C 1.54418 * 102.47107 * 33.73083 * 11 10 9 13 13 C 1.53002 * 109.83027 * 218.93994 * 12 11 10 14 14 C 1.50694 * 109.83389 * 98.04988 * 12 11 10 15 15 H 1.08001 * 120.00487 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99860 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00332 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00048 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47215 * 89.99706 * 18 16 14 20 20 H 1.48493 * 109.47106 * 210.00204 * 18 16 14 21 21 H 1.48501 * 109.46988 * 330.00219 * 18 16 14 22 22 O 1.43166 * 110.54140 * 181.63328 * 9 8 7 23 23 C 1.52538 * 110.62002 * 58.88364 * 9 8 7 24 24 H 1.08996 * 109.46870 * 296.05166 * 1 2 3 25 25 H 1.09005 * 109.47023 * 56.04405 * 1 2 3 26 26 H 1.08996 * 109.47634 * 176.04593 * 1 2 3 27 27 H 1.09000 * 109.47116 * 183.95443 * 3 2 1 28 28 H 1.08996 * 109.47468 * 303.95165 * 3 2 1 29 29 H 1.08999 * 109.47476 * 63.95578 * 3 2 1 30 30 H 1.08999 * 109.45490 * 59.61861 * 6 4 2 31 31 H 1.09002 * 109.45647 * 299.67629 * 6 4 2 32 32 H 1.09002 * 109.47519 * 300.38867 * 7 6 4 33 33 H 1.08996 * 109.49220 * 180.36253 * 7 6 4 34 34 H 1.08999 * 109.46418 * 180.74658 * 8 7 6 35 35 H 1.08996 * 109.45891 * 60.76253 * 8 7 6 36 36 H 1.09004 * 111.33995 * 87.03699 * 10 9 8 37 37 H 1.08998 * 111.15661 * 322.68458 * 10 9 8 38 38 H 1.09002 * 110.84175 * 275.42894 * 11 10 9 39 39 H 1.08998 * 110.83795 * 152.02691 * 11 10 9 40 40 H 1.08992 * 109.47468 * 59.99907 * 13 12 11 41 41 H 1.09002 * 109.46853 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47085 * 299.99254 * 13 12 11 43 43 H 0.96998 * 120.00561 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.46210 * 61.13600 * 23 9 8 45 45 H 1.08998 * 109.46267 * 181.11636 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.5755 -1.7719 1.1238 6 6 1.6092 -0.0697 2.4440 7 6 2.1489 -0.8708 3.6306 8 6 3.6748 -0.9530 3.5373 9 6 4.0693 -1.6270 2.2272 10 6 3.5204 -3.0774 2.2003 11 6 4.5176 -3.7436 1.2125 12 6 5.8346 -2.9956 1.5132 13 6 6.5941 -2.7375 0.2103 14 6 6.6864 -3.8157 2.4475 15 1 6.3342 -4.7745 2.7982 16 6 7.9156 -3.3418 2.8546 17 7 8.3448 -2.1745 2.4273 18 14 8.9712 -4.3580 4.0134 19 1 9.8552 -5.2515 3.2225 20 1 9.8012 -3.4533 4.8486 21 1 8.0962 -5.1772 4.8901 22 8 5.4927 -1.7495 2.1341 23 6 3.5207 -0.8481 1.0359 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0251 -0.0709 27 1 3.0828 1.3431 -0.0709 28 1 1.5900 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 0.5234 -0.0048 2.5136 31 1 2.0344 0.9338 2.4599 32 1 1.7289 -1.8765 3.6113 33 1 1.8677 -0.3772 4.5608 34 1 4.0591 -1.5348 4.3751 35 1 4.0952 0.0521 3.5698 36 1 2.5023 -3.1091 1.8121 37 1 3.5774 -3.5380 3.1866 38 1 4.2069 -3.5822 0.1802 39 1 4.6193 -4.8081 1.4232 40 1 5.9793 -2.1309 -0.4546 41 1 7.5220 -2.2092 0.4292 42 1 6.8219 -3.6881 -0.2719 43 1 9.2094 -1.8410 2.7140 44 1 3.9394 0.1583 1.0360 45 1 3.7963 -1.3561 0.1118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715290496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:12 Heat of formation + Delta-G solvation = -65.517226 kcal Electronic energy + Delta-G solvation = -22667.301597 eV Core-core repulsion = 19683.589971 eV Total energy + Delta-G solvation = -2983.711625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44447 -39.12387 -36.26112 -34.52314 -32.71596 -31.65563 -30.73305 -28.99028 -28.27704 -27.19825 -25.13722 -24.32202 -23.01066 -21.69272 -20.96787 -19.35442 -18.62255 -17.34609 -16.59406 -16.39090 -15.78055 -15.65830 -15.49604 -15.13363 -14.97364 -14.78125 -14.38618 -13.92816 -13.59885 -13.37930 -13.29295 -13.14962 -12.98111 -12.74271 -12.60208 -12.53371 -12.49437 -12.25742 -12.19408 -11.97445 -11.96958 -11.81439 -11.62108 -11.31951 -11.07511 -10.86434 -10.75164 -10.52564 -9.65270 -9.11420 -7.98305 -6.21167 1.40810 1.41937 1.51310 2.44931 3.01580 3.13858 3.47481 3.82648 3.96679 4.03258 4.15182 4.22586 4.24733 4.30477 4.39062 4.50310 4.54458 4.56689 4.62430 4.70130 4.73418 4.78973 4.82902 4.97556 5.01079 5.02589 5.05260 5.09778 5.11156 5.13985 5.17692 5.21885 5.27076 5.30104 5.41523 5.55348 5.56607 5.64317 5.72483 6.13922 6.15743 6.22865 6.40728 6.73957 7.25299 7.55178 9.01932 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031630 B = 0.005698 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.014524 B = 4912.619066 C = 5123.069215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.018 3.982 4 C 0.094 3.906 5 H 0.087 0.913 6 C -0.144 4.144 7 C -0.101 4.101 8 C -0.105 4.105 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.138 4.138 12 C 0.219 3.781 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.032 3.968 17 N -0.891 5.891 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.270 1.270 22 O -0.378 6.378 23 C -0.104 4.104 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.256 0.744 44 H 0.049 0.951 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 4.281 -1.626 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.279 5.279 3 C -0.130 4.130 4 C -0.014 4.014 5 H 0.105 0.895 6 C -0.183 4.183 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.057 3.943 10 C -0.165 4.165 11 C -0.176 4.176 12 C 0.181 3.819 13 C -0.191 4.191 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.170 4.170 17 N -0.529 5.529 18 Si 0.772 3.228 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.194 1.194 22 O -0.298 6.298 23 C -0.142 4.142 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.021 4.330 -2.013 16.718 hybrid contribution 0.965 -0.151 1.179 1.531 sum -15.056 4.178 -0.834 15.648 Atomic orbital electron populations 1.22455 0.86138 1.02761 1.01226 1.62201 1.09038 1.14239 1.42386 1.22454 1.00461 0.88987 1.01095 1.21689 0.93485 0.97855 0.88360 0.89471 1.22155 1.01359 0.99649 0.95108 1.21413 0.92812 1.01171 0.98534 1.21470 0.97083 0.99679 0.96093 1.21970 0.83469 0.94597 0.94224 1.23223 0.98982 0.95032 0.99253 1.23107 0.95810 1.00060 0.98603 1.19659 0.90950 0.81345 0.89929 1.21903 1.01770 0.98989 0.96432 1.21610 1.02491 1.03937 1.30343 0.92968 1.25712 0.98715 0.95520 0.97014 1.70110 1.19451 1.19113 1.44209 0.85768 0.78916 0.78751 0.79368 1.19913 1.21237 1.19435 1.88636 1.19018 1.40755 1.81420 1.21750 0.95125 0.99654 0.97697 0.94534 0.90595 0.91038 0.92752 0.90374 0.94635 0.89951 0.92208 0.90892 0.90375 0.93281 0.93472 0.88884 0.92042 0.91913 0.91841 0.95797 0.92343 0.94361 0.93475 0.93275 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.31 127.69 1.19 1.57 16 2 N -0.56 -13.28 5.01 -923.13 -4.62 -17.91 16 3 C 0.02 0.41 8.82 127.69 1.13 1.53 16 4 C 0.09 2.46 2.02 44.94 0.09 2.55 16 5 H 0.09 2.22 6.17 -2.39 -0.01 2.21 16 6 C -0.14 -3.27 4.49 30.60 0.14 -3.13 16 7 C -0.10 -2.51 5.73 30.63 0.18 -2.34 16 8 C -0.11 -3.68 5.10 30.47 0.16 -3.53 16 9 C 0.10 3.84 0.89 -10.38 -0.01 3.83 16 10 C -0.13 -4.60 4.86 32.13 0.16 -4.45 16 11 C -0.14 -5.75 5.67 31.89 0.18 -5.57 16 12 C 0.22 11.16 0.82 -11.06 -0.01 11.15 16 13 C -0.13 -6.80 8.52 71.98 0.61 -6.19 16 14 C -0.55 -30.66 8.23 25.60 0.21 -30.45 16 15 H 0.05 2.88 7.49 -2.91 -0.02 2.86 16 16 C 0.03 1.82 5.26 84.66 0.45 2.27 16 17 N -0.89 -53.22 10.92 21.45 0.23 -52.99 16 18 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 O -0.38 -19.71 9.57 -148.98 -1.43 -21.13 16 23 C -0.10 -3.60 4.18 30.47 0.13 -3.48 16 24 H 0.04 0.58 6.43 -2.39 -0.02 0.56 16 25 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.44 6.31 -2.39 -0.02 1.42 16 28 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 29 H 0.04 0.74 6.29 -2.39 -0.02 0.73 16 30 H 0.08 1.52 6.50 -2.39 -0.02 1.50 16 31 H 0.06 1.44 6.40 -2.39 -0.02 1.42 16 32 H 0.07 1.69 7.24 -2.39 -0.02 1.68 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 2.72 5.84 -2.38 -0.01 2.71 16 37 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 38 H 0.06 2.42 7.48 -2.39 -0.02 2.40 16 39 H 0.06 2.61 7.61 -2.39 -0.02 2.59 16 40 H 0.02 1.10 8.08 -2.39 -0.02 1.08 16 41 H 0.06 3.34 6.01 -2.39 -0.01 3.33 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 44 H 0.05 1.81 6.39 -2.39 -0.02 1.79 16 45 H 0.05 1.91 7.38 -2.39 -0.02 1.89 16 Total: -1.00 -64.41 325.15 1.75 -62.66 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.95 Total: 19.01 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 4.59 Total: -36.21 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -4.39 Total: -70.89 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.43 Total: -21.13 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.41 1.75 -62.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715290496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.855 kcal (2) G-P(sol) polarization free energy of solvation -64.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds