Wall clock time and date at job start Mon Mar 30 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99689 * 2 1 4 4 C 1.46892 * 111.00591 * 123.95050 * 2 1 3 5 5 H 1.09012 * 109.47851 * 54.98557 * 4 2 1 6 6 C 1.52998 * 109.47599 * 294.97706 * 4 2 1 7 7 C 1.53001 * 109.52158 * 179.74735 * 6 4 2 8 8 C 1.53045 * 109.45306 * 60.25074 * 7 6 4 9 9 C 1.52759 * 109.47940 * 300.45973 * 8 7 6 10 10 C 1.53898 * 109.70532 * 180.13583 * 9 8 7 11 11 C 1.54856 * 104.10534 * 121.43324 * 10 9 8 12 12 C 1.55014 * 102.10254 * 20.83855 * 11 10 9 13 13 C 1.52995 * 110.60887 * 81.62142 * 12 11 10 14 14 C 1.50701 * 110.61314 * 204.44772 * 12 11 10 15 15 H 1.07998 * 119.99974 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99764 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00649 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99899 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46988 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47077 * 119.99721 * 18 16 14 21 21 H 1.48501 * 109.47190 * 239.99428 * 18 16 14 22 22 O 1.43521 * 109.86941 * 298.14041 * 9 8 7 23 23 C 1.52772 * 110.17460 * 59.29884 * 9 8 7 24 24 H 1.09003 * 109.47279 * 296.04352 * 1 2 3 25 25 H 1.09000 * 109.47493 * 56.04625 * 1 2 3 26 26 H 1.09001 * 109.46858 * 176.04895 * 1 2 3 27 27 H 1.09005 * 109.47218 * 183.95870 * 3 2 1 28 28 H 1.09000 * 109.46980 * 303.95392 * 3 2 1 29 29 H 1.08991 * 109.47607 * 63.95473 * 3 2 1 30 30 H 1.08999 * 109.46385 * 59.73330 * 6 4 2 31 31 H 1.08999 * 109.45995 * 299.76124 * 6 4 2 32 32 H 1.08995 * 109.47492 * 300.25135 * 7 6 4 33 33 H 1.09003 * 109.47609 * 180.24612 * 7 6 4 34 34 H 1.09008 * 109.46687 * 180.45739 * 8 7 6 35 35 H 1.08995 * 109.46977 * 60.46480 * 8 7 6 36 36 H 1.09003 * 110.50421 * 240.08546 * 10 9 8 37 37 H 1.09000 * 110.50307 * 2.63653 * 10 9 8 38 38 H 1.08996 * 110.91522 * 139.04191 * 11 10 9 39 39 H 1.09001 * 110.90366 * 262.60748 * 11 10 9 40 40 H 1.09009 * 109.47423 * 75.55093 * 13 12 11 41 41 H 1.08999 * 109.47561 * 195.54761 * 13 12 11 42 42 H 1.09003 * 109.47419 * 315.55192 * 13 12 11 43 43 H 0.96995 * 120.00931 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47070 * 60.68975 * 23 9 8 45 45 H 1.08996 * 109.47574 * 180.68935 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7658 1.1375 5 1 1.5753 -1.7716 1.1243 6 6 1.6098 -0.0691 2.4439 7 6 2.1523 -0.8693 3.6297 8 6 3.6775 -0.9524 3.5334 9 6 4.0688 -1.6353 2.2242 10 6 5.6019 -1.7247 2.1235 11 6 5.8836 -3.2416 1.9901 12 6 4.5196 -3.7827 1.4903 13 6 4.3816 -3.5824 -0.0202 14 6 4.3633 -5.2384 1.8474 15 1 5.1502 -5.7512 2.3805 16 6 3.2161 -5.9159 1.4925 17 7 2.2580 -5.2917 0.8429 18 14 3.0227 -7.7206 1.9345 19 1 4.2331 -8.1854 2.6583 20 1 1.8299 -7.8926 2.8021 21 1 2.8514 -8.5184 0.6938 22 8 3.5553 -2.9753 2.2005 23 6 3.5203 -0.8485 1.0351 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0827 1.3434 -0.0709 28 1 1.5896 1.9163 -0.8524 29 1 1.7043 1.8724 0.9232 30 1 0.5239 -0.0058 2.5149 31 1 2.0337 0.9349 2.4589 32 1 1.7318 -1.8747 3.6125 33 1 1.8734 -0.3747 4.5601 34 1 4.0637 -1.5294 4.3738 35 1 4.0984 0.0526 3.5589 36 1 5.9584 -1.1913 1.2423 37 1 6.0676 -1.3255 3.0246 38 1 6.6683 -3.4286 1.2572 39 1 6.1444 -3.6751 2.9556 40 1 4.9925 -4.3193 -0.5418 41 1 3.3379 -3.7057 -0.3092 42 1 4.7162 -2.5796 -0.2858 43 1 1.4508 -5.7682 0.5936 44 1 3.9397 0.1575 1.0405 45 1 3.7954 -1.3519 0.1083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715290498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:15 Heat of formation + Delta-G solvation = -46.090026 kcal Electronic energy + Delta-G solvation = -22998.803244 eV Core-core repulsion = 20015.934045 eV Total energy + Delta-G solvation = -2982.869199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86364 -37.61601 -34.59858 -32.54265 -31.01506 -29.91213 -29.55719 -27.45356 -27.04056 -25.22602 -23.95721 -22.64836 -21.39567 -19.63396 -19.47192 -18.24808 -16.45273 -15.68652 -14.92570 -14.60290 -14.50985 -14.26407 -14.21920 -13.80820 -13.37093 -13.20890 -12.62685 -12.28324 -12.17629 -12.11124 -11.73063 -11.65498 -11.42540 -11.15476 -11.07518 -10.93554 -10.71723 -10.59799 -10.50288 -10.48010 -10.23981 -10.08809 -9.98047 -9.87367 -9.34435 -9.19319 -8.79647 -8.45818 -7.97272 -7.84265 -5.92783 -4.06996 3.31890 3.40326 3.43746 4.31271 4.45340 4.97736 5.20899 5.27754 5.35750 5.48115 5.50920 5.59682 5.63677 5.65744 5.73540 5.75279 5.82826 5.96064 5.99695 6.01832 6.13710 6.14955 6.18905 6.20957 6.27943 6.37161 6.48650 6.59629 6.64719 6.73205 6.77789 6.84158 6.87946 6.94918 7.00447 7.13831 7.34847 7.37500 7.47063 7.50677 7.83892 8.17886 8.42539 8.70888 9.06348 9.62760 11.09852 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.007304 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.321987 B = 3832.853933 C = 4304.861808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.019 3.981 4 C 0.092 3.908 5 H 0.103 0.897 6 C -0.146 4.146 7 C -0.109 4.109 8 C -0.104 4.104 9 C 0.101 3.899 10 C -0.145 4.145 11 C -0.142 4.142 12 C 0.232 3.768 13 C -0.145 4.145 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.336 6.336 23 C -0.122 4.122 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.258 0.742 44 H 0.048 0.952 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 11.529 0.804 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.262 5.262 3 C -0.129 4.129 4 C -0.016 4.016 5 H 0.121 0.879 6 C -0.185 4.185 7 C -0.147 4.147 8 C -0.142 4.142 9 C 0.059 3.941 10 C -0.183 4.183 11 C -0.180 4.180 12 C 0.195 3.805 13 C -0.203 4.203 14 C -0.556 4.556 15 H 0.079 0.921 16 C -0.124 4.124 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.255 6.255 23 C -0.160 4.160 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.320 11.206 0.352 11.216 hybrid contribution -0.256 -0.367 0.894 1.000 sum -0.576 10.840 1.246 10.926 Atomic orbital electron populations 1.22357 0.88144 1.02330 0.99563 1.62238 1.07321 1.12997 1.43622 1.22429 1.01032 0.89846 0.99640 1.21706 0.95910 0.98117 0.85868 0.87940 1.22160 0.99885 0.99239 0.97244 1.21353 0.95988 1.01146 0.96202 1.21590 0.95958 0.98934 0.97714 1.21604 0.91626 0.88038 0.92787 1.22934 0.96516 0.98330 1.00543 1.23181 1.00752 0.93252 1.00796 1.19995 0.81608 0.90192 0.88751 1.22260 1.03924 0.96138 0.97957 1.20917 1.03476 0.92542 1.38711 0.92121 1.24994 0.95712 0.97680 0.94042 1.69993 1.06552 1.35547 1.37332 0.86632 0.78118 0.85574 0.78176 1.19798 1.21002 1.21045 1.89226 1.45713 1.14152 1.76430 1.22269 0.94200 0.99042 1.00505 0.95850 0.92199 0.91189 0.91332 0.92328 0.95750 0.92787 0.92812 0.90504 0.93354 0.91879 0.92734 0.92245 0.92398 0.92493 0.92143 0.94620 0.89544 0.96458 0.93220 0.93342 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.31 60.06 0.56 0.90 16 2 N -0.54 -8.62 5.01 -243.15 -1.22 -9.84 16 3 C 0.02 0.25 8.82 60.07 0.53 0.78 16 4 C 0.09 1.63 2.10 -67.69 -0.14 1.48 16 5 H 0.10 2.25 7.75 -51.92 -0.40 1.85 16 6 C -0.15 -2.29 4.50 -26.73 -0.12 -2.41 16 7 C -0.11 -1.81 5.80 -26.71 -0.15 -1.96 16 8 C -0.10 -1.78 4.72 -26.83 -0.13 -1.91 16 9 C 0.10 1.96 0.66 -90.39 -0.06 1.90 16 10 C -0.15 -2.65 5.78 -25.29 -0.15 -2.80 16 11 C -0.14 -2.99 6.03 -24.69 -0.15 -3.14 16 12 C 0.23 5.70 0.75 -90.71 -0.07 5.63 16 13 C -0.15 -3.49 7.37 37.15 0.27 -3.22 16 14 C -0.52 -14.21 8.32 -34.44 -0.29 -14.50 16 15 H 0.06 1.65 7.77 -52.49 -0.41 1.25 16 16 C 0.08 2.23 5.29 -17.82 -0.09 2.13 16 17 N -0.86 -24.13 11.21 55.43 0.62 -23.51 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 O -0.34 -8.17 9.00 -35.23 -0.32 -8.49 16 23 C -0.12 -2.22 3.52 -26.83 -0.09 -2.31 16 24 H 0.02 0.31 6.43 -51.93 -0.33 -0.03 16 25 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.91 6.32 -51.93 -0.33 0.58 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.02 0.31 6.29 -51.93 -0.33 -0.02 16 30 H 0.05 0.81 6.51 -51.93 -0.34 0.48 16 31 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 37 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 38 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 39 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 40 H 0.03 0.85 8.10 -51.92 -0.42 0.43 16 41 H 0.09 2.30 6.45 -51.93 -0.34 1.97 16 42 H 0.02 0.37 5.24 -51.93 -0.27 0.09 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 45 H 0.09 1.72 4.81 -51.93 -0.25 1.47 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -28.12 323.84 -8.92 -37.03 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.78 Total: 3.18 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.08 Total: -19.42 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: -0.60 Total: -33.35 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.32 Total: -8.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.12 -8.92 -37.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715290498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.056 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds