Wall clock time and date at job start Mon Mar 30 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99689 * 2 1 4 4 C 1.46892 * 111.00591 * 123.95050 * 2 1 3 5 5 H 1.09012 * 109.47851 * 54.98557 * 4 2 1 6 6 C 1.52998 * 109.47599 * 294.97706 * 4 2 1 7 7 C 1.53001 * 109.52158 * 179.74735 * 6 4 2 8 8 C 1.53045 * 109.45306 * 60.25074 * 7 6 4 9 9 C 1.52759 * 109.47940 * 300.45973 * 8 7 6 10 10 C 1.53898 * 109.70532 * 180.13583 * 9 8 7 11 11 C 1.54856 * 104.10534 * 121.43324 * 10 9 8 12 12 C 1.55014 * 102.10254 * 20.83855 * 11 10 9 13 13 C 1.52995 * 110.60887 * 81.62142 * 12 11 10 14 14 C 1.50701 * 110.61314 * 204.44772 * 12 11 10 15 15 H 1.07998 * 119.99974 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99764 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00649 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99899 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46988 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47077 * 119.99721 * 18 16 14 21 21 H 1.48501 * 109.47190 * 239.99428 * 18 16 14 22 22 O 1.43521 * 109.86941 * 298.14041 * 9 8 7 23 23 C 1.52772 * 110.17460 * 59.29884 * 9 8 7 24 24 H 1.09003 * 109.47279 * 296.04352 * 1 2 3 25 25 H 1.09000 * 109.47493 * 56.04625 * 1 2 3 26 26 H 1.09001 * 109.46858 * 176.04895 * 1 2 3 27 27 H 1.09005 * 109.47218 * 183.95870 * 3 2 1 28 28 H 1.09000 * 109.46980 * 303.95392 * 3 2 1 29 29 H 1.08991 * 109.47607 * 63.95473 * 3 2 1 30 30 H 1.08999 * 109.46385 * 59.73330 * 6 4 2 31 31 H 1.08999 * 109.45995 * 299.76124 * 6 4 2 32 32 H 1.08995 * 109.47492 * 300.25135 * 7 6 4 33 33 H 1.09003 * 109.47609 * 180.24612 * 7 6 4 34 34 H 1.09008 * 109.46687 * 180.45739 * 8 7 6 35 35 H 1.08995 * 109.46977 * 60.46480 * 8 7 6 36 36 H 1.09003 * 110.50421 * 240.08546 * 10 9 8 37 37 H 1.09000 * 110.50307 * 2.63653 * 10 9 8 38 38 H 1.08996 * 110.91522 * 139.04191 * 11 10 9 39 39 H 1.09001 * 110.90366 * 262.60748 * 11 10 9 40 40 H 1.09009 * 109.47423 * 75.55093 * 13 12 11 41 41 H 1.08999 * 109.47561 * 195.54761 * 13 12 11 42 42 H 1.09003 * 109.47419 * 315.55192 * 13 12 11 43 43 H 0.96995 * 120.00931 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47070 * 60.68975 * 23 9 8 45 45 H 1.08996 * 109.47574 * 180.68935 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7658 1.1375 5 1 1.5753 -1.7716 1.1243 6 6 1.6098 -0.0691 2.4439 7 6 2.1523 -0.8693 3.6297 8 6 3.6775 -0.9524 3.5334 9 6 4.0688 -1.6353 2.2242 10 6 5.6019 -1.7247 2.1235 11 6 5.8836 -3.2416 1.9901 12 6 4.5196 -3.7827 1.4903 13 6 4.3816 -3.5824 -0.0202 14 6 4.3633 -5.2384 1.8474 15 1 5.1502 -5.7512 2.3805 16 6 3.2161 -5.9159 1.4925 17 7 2.2580 -5.2917 0.8429 18 14 3.0227 -7.7206 1.9345 19 1 4.2331 -8.1854 2.6583 20 1 1.8299 -7.8926 2.8021 21 1 2.8514 -8.5184 0.6938 22 8 3.5553 -2.9753 2.2005 23 6 3.5203 -0.8485 1.0351 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0827 1.3434 -0.0709 28 1 1.5896 1.9163 -0.8524 29 1 1.7043 1.8724 0.9232 30 1 0.5239 -0.0058 2.5149 31 1 2.0337 0.9349 2.4589 32 1 1.7318 -1.8747 3.6125 33 1 1.8734 -0.3747 4.5601 34 1 4.0637 -1.5294 4.3738 35 1 4.0984 0.0526 3.5589 36 1 5.9584 -1.1913 1.2423 37 1 6.0676 -1.3255 3.0246 38 1 6.6683 -3.4286 1.2572 39 1 6.1444 -3.6751 2.9556 40 1 4.9925 -4.3193 -0.5418 41 1 3.3379 -3.7057 -0.3092 42 1 4.7162 -2.5796 -0.2858 43 1 1.4508 -5.7682 0.5936 44 1 3.9397 0.1575 1.0405 45 1 3.7954 -1.3519 0.1083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715290498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:14 Heat of formation + Delta-G solvation = -63.153845 kcal Electronic energy + Delta-G solvation = -22999.543186 eV Core-core repulsion = 20015.934045 eV Total energy + Delta-G solvation = -2983.609141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36935 -39.05807 -36.07474 -34.44831 -32.70870 -31.56710 -30.97711 -28.82924 -28.36985 -27.24078 -25.26203 -24.19340 -22.78143 -21.38131 -20.90827 -19.74280 -18.42060 -17.13071 -16.53773 -16.22592 -15.97951 -15.75769 -15.50726 -15.31303 -14.80961 -14.73800 -14.21104 -13.92827 -13.71749 -13.46635 -13.26557 -12.93202 -12.87694 -12.71927 -12.61931 -12.40037 -12.36020 -12.30281 -12.24093 -12.04192 -11.90752 -11.71039 -11.54512 -11.41671 -10.87990 -10.83227 -10.62374 -10.46442 -9.73513 -9.05292 -8.00879 -6.22219 1.39500 1.41959 1.52337 2.44250 3.07511 3.17084 3.65845 3.86698 4.00616 4.10780 4.17158 4.24620 4.29653 4.37607 4.42188 4.55581 4.60033 4.63484 4.65880 4.68902 4.74901 4.83727 4.84316 4.95995 4.97836 5.03809 5.04399 5.08818 5.09087 5.16072 5.23143 5.27701 5.32817 5.39484 5.46720 5.50147 5.62410 5.70388 5.79844 6.18170 6.22817 6.30560 6.41396 6.73974 7.18814 7.51225 8.99797 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.007304 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.321987 B = 3832.853933 C = 4304.861808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.020 3.980 4 C 0.100 3.900 5 H 0.045 0.955 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.102 4.102 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.140 4.140 12 C 0.219 3.781 13 C -0.129 4.129 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.035 3.965 17 N -0.883 5.883 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.279 1.279 22 O -0.367 6.367 23 C -0.115 4.115 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 13.980 1.406 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.128 4.128 4 C -0.008 4.008 5 H 0.064 0.936 6 C -0.175 4.175 7 C -0.145 4.145 8 C -0.139 4.139 9 C 0.047 3.953 10 C -0.174 4.174 11 C -0.178 4.178 12 C 0.181 3.819 13 C -0.187 4.187 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.168 4.168 17 N -0.520 5.520 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.205 1.205 22 O -0.287 6.287 23 C -0.152 4.152 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.453 13.663 0.955 13.704 hybrid contribution -0.511 -1.103 0.686 1.396 sum -0.058 12.561 1.641 12.668 Atomic orbital electron populations 1.22353 0.87293 1.01481 1.01059 1.62173 1.08336 1.14801 1.42964 1.22490 1.01082 0.88149 1.01067 1.21387 0.95488 0.96011 0.87913 0.93636 1.22065 1.00269 0.99799 0.95374 1.21315 0.95868 0.99298 0.98006 1.21606 0.96110 1.00266 0.95920 1.21949 0.92504 0.86174 0.94653 1.22924 0.95658 0.96211 1.02625 1.23085 0.98925 0.95393 1.00399 1.20010 0.83698 0.89396 0.88779 1.22058 1.01489 0.97047 0.98060 1.21300 1.03372 0.94728 1.38559 0.92886 1.25695 0.95559 1.01441 0.94122 1.70148 1.06787 1.36790 1.38271 0.85708 0.77936 0.81163 0.77964 1.19213 1.21075 1.20460 1.89160 1.46422 1.16743 1.76389 1.22152 0.94503 0.99911 0.98661 0.94786 0.90015 0.93432 0.91210 0.90590 0.94516 0.92430 0.90267 0.94707 0.90687 0.92630 0.89260 0.90512 0.89847 0.91577 0.92914 0.95658 0.92874 0.94203 0.93526 0.90398 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.31 127.69 1.19 1.91 16 2 N -0.56 -17.25 5.01 -923.20 -4.62 -21.87 16 3 C 0.02 0.46 8.82 127.69 1.13 1.58 16 4 C 0.10 3.54 2.10 44.93 0.09 3.63 16 5 H 0.05 2.12 7.75 -2.38 -0.02 2.11 16 6 C -0.14 -4.00 4.50 30.59 0.14 -3.86 16 7 C -0.11 -3.41 5.80 30.61 0.18 -3.23 16 8 C -0.10 -3.22 4.72 30.53 0.14 -3.08 16 9 C 0.09 3.30 0.66 -10.65 -0.01 3.30 16 10 C -0.14 -4.63 5.78 31.53 0.18 -4.45 16 11 C -0.14 -5.81 6.03 31.92 0.19 -5.62 16 12 C 0.22 10.98 0.75 -10.85 -0.01 10.98 16 13 C -0.13 -6.38 7.37 71.98 0.53 -5.85 16 14 C -0.54 -30.57 8.32 25.60 0.21 -30.36 16 15 H 0.05 2.97 7.77 -2.91 -0.02 2.95 16 16 C 0.03 1.95 5.29 84.65 0.45 2.40 16 17 N -0.88 -51.94 11.21 21.45 0.24 -51.70 16 18 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 O -0.37 -18.33 9.00 -148.98 -1.34 -19.67 16 23 C -0.11 -4.00 3.52 30.53 0.11 -3.89 16 24 H 0.03 0.84 6.43 -2.39 -0.02 0.83 16 25 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.60 6.32 -2.38 -0.02 1.58 16 28 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.04 0.77 6.29 -2.39 -0.02 0.75 16 30 H 0.06 1.64 6.51 -2.39 -0.02 1.63 16 31 H 0.08 1.96 6.40 -2.39 -0.02 1.94 16 32 H 0.03 1.39 7.76 -2.39 -0.02 1.37 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.34 7.68 -2.39 -0.02 2.32 16 37 H 0.08 2.41 7.69 -2.39 -0.02 2.39 16 38 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 39 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 40 H 0.02 1.23 8.10 -2.38 -0.02 1.21 16 41 H 0.05 2.97 6.45 -2.39 -0.02 2.95 16 42 H 0.04 1.73 5.24 -2.39 -0.01 1.72 16 43 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.08 2.24 6.40 -2.39 -0.02 2.23 16 45 H 0.06 2.38 4.81 -2.39 -0.01 2.37 16 Total: -1.00 -63.69 323.84 1.78 -61.91 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.95 Total: 21.20 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.53 Total: -36.55 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -4.38 Total: -73.58 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.34 Total: -19.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.69 1.78 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715290498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.248 kcal (2) G-P(sol) polarization free energy of solvation -63.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds