Wall clock time and date at job start Mon Mar 30 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99795 * 2 1 4 4 C 1.46900 * 110.99865 * 123.95034 * 2 1 3 5 5 C 1.52997 * 109.46384 * 179.97438 * 4 2 1 6 6 C 1.53041 * 109.44974 * 179.76276 * 5 4 2 7 7 C 1.52819 * 109.45269 * 59.62176 * 6 5 4 8 8 C 1.54231 * 109.40163 * 60.81587 * 7 6 5 9 9 C 1.55338 * 102.19784 * 98.36386 * 8 7 6 10 10 C 1.54962 * 100.99531 * 33.99222 * 9 8 7 11 11 C 1.53001 * 110.30726 * 82.58755 * 10 9 8 12 12 C 1.50703 * 110.31170 * 204.75363 * 10 9 8 13 13 H 1.08002 * 119.99815 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99872 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99672 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46810 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47046 * 120.00140 * 16 14 12 19 19 H 1.48496 * 109.46893 * 240.00166 * 16 14 12 20 20 O 1.43046 * 110.05471 * 179.05704 * 7 6 5 21 21 C 1.52809 * 110.07851 * 300.56006 * 7 6 5 22 22 C 1.52999 * 109.46118 * 59.93537 * 4 2 1 23 23 H 1.09008 * 109.47161 * 296.04613 * 1 2 3 24 24 H 1.08999 * 109.47170 * 56.04639 * 1 2 3 25 25 H 1.08996 * 109.47192 * 176.04709 * 1 2 3 26 26 H 1.09003 * 109.46981 * 183.94743 * 3 2 1 27 27 H 1.08999 * 109.47241 * 303.95106 * 3 2 1 28 28 H 1.09008 * 109.47485 * 63.95813 * 3 2 1 29 29 H 1.09000 * 109.46457 * 299.97829 * 4 2 1 30 30 H 1.09012 * 109.47257 * 59.77131 * 5 4 2 31 31 H 1.09001 * 109.47887 * 299.76551 * 5 4 2 32 32 H 1.08998 * 109.47384 * 299.62563 * 6 5 4 33 33 H 1.08996 * 109.47267 * 179.61661 * 6 5 4 34 34 H 1.09002 * 110.86062 * 340.18723 * 8 7 6 35 35 H 1.08998 * 110.86031 * 216.54215 * 8 7 6 36 36 H 1.09002 * 111.12388 * 151.93793 * 9 8 7 37 37 H 1.09004 * 111.12200 * 276.05076 * 9 8 7 38 38 H 1.09003 * 109.47229 * 60.00426 * 11 10 9 39 39 H 1.09000 * 109.47310 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.47508 * 300.00048 * 11 10 9 41 41 H 0.97001 * 120.00046 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47715 * 179.42743 * 21 7 6 43 43 H 1.09006 * 109.47500 * 299.43390 * 21 7 6 44 44 H 1.08995 * 109.47705 * 300.22756 * 22 4 2 45 45 H 1.09003 * 109.47164 * 60.23219 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5248 -0.7436 1.1033 6 6 4.0729 -1.5366 2.2919 7 6 3.5744 -2.9791 2.2146 8 6 4.0790 -3.6263 0.9087 9 6 5.3236 -4.4186 1.3946 10 6 4.8667 -4.8463 2.8122 11 6 3.9973 -6.1028 2.7333 12 6 6.0629 -5.0913 3.6956 13 1 7.0603 -4.9597 3.3028 14 6 5.8838 -5.4825 5.0055 15 7 4.6693 -5.6423 5.4840 16 14 7.3666 -5.7855 6.1007 17 1 8.6108 -5.5388 5.3286 18 1 7.3166 -4.8672 7.2667 19 1 7.3509 -7.1918 6.5771 20 8 4.0973 -3.7381 3.3086 21 6 2.0468 -3.0083 2.2386 22 6 1.5034 -2.2120 1.0500 23 1 -0.3634 0.4513 0.9234 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0707 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8724 0.9234 29 1 1.6462 -0.3196 2.0687 30 1 3.8746 0.2873 1.1618 31 1 3.8741 -1.1936 0.1740 32 1 3.7290 -1.0826 3.2213 33 1 5.1625 -1.5267 2.2640 34 1 4.3630 -2.8646 0.1826 35 1 3.3284 -4.2989 0.4936 36 1 5.5077 -5.2873 0.7624 37 1 6.2036 -3.7771 1.4424 38 1 4.5707 -6.9139 2.2845 39 1 3.6842 -6.3916 3.7367 40 1 3.1178 -5.8984 2.1227 41 1 4.5435 -5.9171 6.4057 42 1 1.7019 -4.0402 2.1728 43 1 1.6893 -2.5642 3.1677 44 1 0.4137 -2.2270 1.0706 45 1 1.8554 -2.6599 0.1207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715295303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:01 Heat of formation + Delta-G solvation = -49.317432 kcal Electronic energy + Delta-G solvation = -22364.490199 eV Core-core repulsion = 19381.481050 eV Total energy + Delta-G solvation = -2983.009149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90294 -37.83195 -34.84084 -32.53435 -30.96674 -30.77556 -29.35554 -27.54416 -26.95532 -25.27748 -23.65174 -22.59868 -21.94947 -20.39410 -19.24589 -18.13359 -16.42911 -16.10632 -15.17731 -14.92849 -14.75848 -14.51496 -14.33489 -13.73387 -13.34730 -12.96391 -12.64220 -12.43416 -12.36981 -12.28950 -11.86251 -11.72152 -11.62489 -11.34408 -11.26553 -10.92667 -10.78774 -10.71916 -10.60217 -10.42702 -10.36591 -10.21609 -10.09345 -9.95723 -9.46462 -9.22458 -8.87365 -8.44028 -8.34702 -7.81724 -5.92093 -4.08149 3.31522 3.39836 3.43324 3.91581 4.45029 4.85982 4.89619 5.04944 5.12598 5.31568 5.42415 5.42906 5.46955 5.56598 5.61380 5.64538 5.67440 5.71068 5.80189 5.83303 5.87845 6.02932 6.05884 6.18017 6.22365 6.29322 6.33907 6.50320 6.58342 6.65044 6.69464 6.72094 6.86662 6.94268 6.97163 7.02817 7.12358 7.13368 7.21704 7.43404 7.81979 8.20898 8.43408 8.74525 9.12983 9.62638 11.09588 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.004990 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.331116 B = 5609.641089 C = 5740.163316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.021 3.979 4 C 0.086 3.914 5 C -0.111 4.111 6 C -0.114 4.114 7 C 0.107 3.893 8 C -0.146 4.146 9 C -0.143 4.143 10 C 0.233 3.767 11 C -0.148 4.148 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.080 3.920 15 N -0.861 5.861 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 O -0.344 6.344 21 C -0.117 4.117 22 C -0.108 4.108 23 H 0.022 0.978 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.091 0.909 40 H 0.011 0.989 41 H 0.258 0.742 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 9.483 -9.794 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.021 4.021 5 C -0.149 4.149 6 C -0.153 4.153 7 C 0.066 3.934 8 C -0.183 4.183 9 C -0.181 4.181 10 C 0.196 3.804 11 C -0.205 4.205 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.125 4.125 15 N -0.498 5.498 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 O -0.264 6.264 21 C -0.155 4.155 22 C -0.146 4.146 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.515 9.248 -9.850 15.000 hybrid contribution 0.422 0.271 1.184 1.286 sum -6.093 9.519 -8.666 14.242 Atomic orbital electron populations 1.22418 0.87859 1.02394 0.99989 1.62043 1.07515 1.13395 1.43882 1.22427 1.01313 0.88995 0.99979 1.21711 0.95544 0.94222 0.90671 1.21725 0.93631 0.99801 0.99756 1.21704 1.00848 0.95484 0.97247 1.21564 0.91820 0.91569 0.88480 1.23194 0.98421 0.99188 0.97515 1.23310 0.96669 0.98797 0.99330 1.19877 0.88801 0.83751 0.87988 1.22130 0.97076 0.98340 1.02997 1.21064 0.91444 1.46870 0.96490 0.92125 1.25013 0.95485 0.94071 0.97933 1.69954 1.20080 1.44956 1.14796 0.86624 0.83332 0.77720 0.80782 1.19735 1.20948 1.20999 1.88807 1.68955 1.41117 1.27473 1.21809 0.96386 1.00040 0.97303 1.21616 0.99459 0.93856 0.99651 0.95926 0.91804 0.90950 0.90877 0.91822 0.95927 0.94354 0.92362 0.90849 0.92137 0.91417 0.91616 0.91922 0.92295 0.92036 0.94954 0.89029 0.96993 0.93169 0.91581 0.92166 0.92471 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.21 60.06 0.55 0.78 16 2 N -0.54 -6.62 4.89 -243.18 -1.19 -7.81 16 3 C 0.02 0.22 9.11 60.06 0.55 0.77 16 4 C 0.09 1.18 1.94 -67.72 -0.13 1.05 16 5 C -0.11 -1.59 4.62 -26.71 -0.12 -1.71 16 6 C -0.11 -2.02 5.10 -26.80 -0.14 -2.15 16 7 C 0.11 2.10 0.99 -90.17 -0.09 2.01 16 8 C -0.15 -2.66 4.39 -24.85 -0.11 -2.77 16 9 C -0.14 -3.03 6.01 -24.46 -0.15 -3.18 16 10 C 0.23 5.85 0.73 -90.73 -0.07 5.79 16 11 C -0.15 -3.63 8.62 37.16 0.32 -3.31 16 12 C -0.52 -14.46 8.30 -34.44 -0.29 -14.75 16 13 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 14 C 0.08 2.23 5.28 -17.82 -0.09 2.13 16 15 N -0.86 -24.84 10.97 55.43 0.61 -24.23 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 O -0.34 -8.75 9.74 -35.23 -0.34 -9.10 16 21 C -0.12 -2.07 4.96 -26.81 -0.13 -2.20 16 22 C -0.11 -1.55 4.75 -26.71 -0.13 -1.67 16 23 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 24 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 25 H 0.07 0.75 6.30 -51.93 -0.33 0.42 16 26 H 0.07 0.75 6.23 -51.93 -0.32 0.43 16 27 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 28 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.75 6.33 -51.92 -0.33 0.42 16 31 H 0.07 1.06 6.14 -51.93 -0.32 0.74 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.07 5.80 -51.93 -0.30 0.77 16 35 H 0.06 1.11 7.25 -51.93 -0.38 0.73 16 36 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 37 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 2.50 5.93 -51.93 -0.31 2.20 16 40 H 0.01 0.25 7.31 -51.93 -0.38 -0.13 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 45 H 0.07 1.03 7.06 -51.93 -0.37 0.67 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -29.27 328.47 -8.97 -38.23 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.95 Total: 0.89 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.02 Total: -19.22 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: -0.58 Total: -32.04 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.34 Total: -9.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.27 -8.97 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715295303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.085 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds