Wall clock time and date at job start Mon Mar 30 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99795 * 2 1 4 4 C 1.46900 * 110.99865 * 123.95034 * 2 1 3 5 5 C 1.52997 * 109.46384 * 179.97438 * 4 2 1 6 6 C 1.53041 * 109.44974 * 179.76276 * 5 4 2 7 7 C 1.52819 * 109.45269 * 59.62176 * 6 5 4 8 8 C 1.54231 * 109.40163 * 60.81587 * 7 6 5 9 9 C 1.55338 * 102.19784 * 98.36386 * 8 7 6 10 10 C 1.54962 * 100.99531 * 33.99222 * 9 8 7 11 11 C 1.53001 * 110.30726 * 82.58755 * 10 9 8 12 12 C 1.50703 * 110.31170 * 204.75363 * 10 9 8 13 13 H 1.08002 * 119.99815 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99872 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00608 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99672 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46810 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47046 * 120.00140 * 16 14 12 19 19 H 1.48496 * 109.46893 * 240.00166 * 16 14 12 20 20 O 1.43046 * 110.05471 * 179.05704 * 7 6 5 21 21 C 1.52809 * 110.07851 * 300.56006 * 7 6 5 22 22 C 1.52999 * 109.46118 * 59.93537 * 4 2 1 23 23 H 1.09008 * 109.47161 * 296.04613 * 1 2 3 24 24 H 1.08999 * 109.47170 * 56.04639 * 1 2 3 25 25 H 1.08996 * 109.47192 * 176.04709 * 1 2 3 26 26 H 1.09003 * 109.46981 * 183.94743 * 3 2 1 27 27 H 1.08999 * 109.47241 * 303.95106 * 3 2 1 28 28 H 1.09008 * 109.47485 * 63.95813 * 3 2 1 29 29 H 1.09000 * 109.46457 * 299.97829 * 4 2 1 30 30 H 1.09012 * 109.47257 * 59.77131 * 5 4 2 31 31 H 1.09001 * 109.47887 * 299.76551 * 5 4 2 32 32 H 1.08998 * 109.47384 * 299.62563 * 6 5 4 33 33 H 1.08996 * 109.47267 * 179.61661 * 6 5 4 34 34 H 1.09002 * 110.86062 * 340.18723 * 8 7 6 35 35 H 1.08998 * 110.86031 * 216.54215 * 8 7 6 36 36 H 1.09002 * 111.12388 * 151.93793 * 9 8 7 37 37 H 1.09004 * 111.12200 * 276.05076 * 9 8 7 38 38 H 1.09003 * 109.47229 * 60.00426 * 11 10 9 39 39 H 1.09000 * 109.47310 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.47508 * 300.00048 * 11 10 9 41 41 H 0.97001 * 120.00046 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47715 * 179.42743 * 21 7 6 43 43 H 1.09006 * 109.47500 * 299.43390 * 21 7 6 44 44 H 1.08995 * 109.47705 * 300.22756 * 22 4 2 45 45 H 1.09003 * 109.47164 * 60.23219 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5248 -0.7436 1.1033 6 6 4.0729 -1.5366 2.2919 7 6 3.5744 -2.9791 2.2146 8 6 4.0790 -3.6263 0.9087 9 6 5.3236 -4.4186 1.3946 10 6 4.8667 -4.8463 2.8122 11 6 3.9973 -6.1028 2.7333 12 6 6.0629 -5.0913 3.6956 13 1 7.0603 -4.9597 3.3028 14 6 5.8838 -5.4825 5.0055 15 7 4.6693 -5.6423 5.4840 16 14 7.3666 -5.7855 6.1007 17 1 8.6108 -5.5388 5.3286 18 1 7.3166 -4.8672 7.2667 19 1 7.3509 -7.1918 6.5771 20 8 4.0973 -3.7381 3.3086 21 6 2.0468 -3.0083 2.2386 22 6 1.5034 -2.2120 1.0500 23 1 -0.3634 0.4513 0.9234 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0707 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8724 0.9234 29 1 1.6462 -0.3196 2.0687 30 1 3.8746 0.2873 1.1618 31 1 3.8741 -1.1936 0.1740 32 1 3.7290 -1.0826 3.2213 33 1 5.1625 -1.5267 2.2640 34 1 4.3630 -2.8646 0.1826 35 1 3.3284 -4.2989 0.4936 36 1 5.5077 -5.2873 0.7624 37 1 6.2036 -3.7771 1.4424 38 1 4.5707 -6.9139 2.2845 39 1 3.6842 -6.3916 3.7367 40 1 3.1178 -5.8984 2.1227 41 1 4.5435 -5.9171 6.4057 42 1 1.7019 -4.0402 2.1728 43 1 1.6893 -2.5642 3.1677 44 1 0.4137 -2.2270 1.0706 45 1 1.8554 -2.6599 0.1207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715295303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:00 Heat of formation + Delta-G solvation = -66.998390 kcal Electronic energy + Delta-G solvation = -22365.256903 eV Core-core repulsion = 19381.481050 eV Total energy + Delta-G solvation = -2983.775853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34834 -39.13677 -36.24495 -34.45132 -32.73569 -32.06494 -30.90466 -28.54751 -28.35748 -27.32412 -24.90742 -24.03298 -23.24624 -21.65161 -21.01511 -19.54965 -18.42929 -17.32105 -16.71464 -16.43642 -16.13867 -15.72503 -15.45879 -15.42379 -14.68670 -14.50347 -14.21169 -13.90325 -13.58022 -13.44281 -13.39295 -13.10972 -13.00760 -12.82375 -12.74040 -12.46486 -12.34717 -12.25681 -12.15589 -12.03586 -11.93828 -11.79901 -11.69600 -11.47369 -11.01956 -10.81965 -10.70734 -10.50997 -9.63120 -9.26364 -8.01719 -6.25023 1.40111 1.42278 1.53141 2.43916 2.93883 3.12108 3.57879 3.73449 3.85610 4.05619 4.18399 4.22401 4.31117 4.37229 4.38101 4.52559 4.56324 4.59126 4.63474 4.69061 4.76264 4.77042 4.83479 4.87669 4.94696 4.98786 5.02202 5.06673 5.11100 5.13177 5.18443 5.19779 5.27551 5.31277 5.40295 5.54221 5.57292 5.61789 5.71355 6.13881 6.17545 6.19596 6.39479 6.72087 7.25138 7.50869 8.98782 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.004990 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.331116 B = 5609.641089 C = 5740.163316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.550 5.550 3 C 0.019 3.981 4 C 0.091 3.909 5 C -0.100 4.100 6 C -0.110 4.110 7 C 0.093 3.907 8 C -0.131 4.131 9 C -0.140 4.140 10 C 0.219 3.781 11 C -0.138 4.138 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.032 3.968 15 N -0.890 5.890 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.277 1.277 20 O -0.383 6.383 21 C -0.111 4.111 22 C -0.097 4.097 23 H 0.021 0.979 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.022 0.978 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.257 0.743 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 10.677 -11.682 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.129 4.129 4 C -0.017 4.017 5 C -0.138 4.138 6 C -0.148 4.148 7 C 0.053 3.947 8 C -0.168 4.168 9 C -0.178 4.178 10 C 0.182 3.818 11 C -0.196 4.196 12 C -0.581 4.581 13 H 0.073 0.927 14 C -0.170 4.170 15 N -0.528 5.528 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.203 1.203 20 O -0.303 6.303 21 C -0.150 4.150 22 C -0.135 4.135 23 H 0.040 0.960 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.763 10.450 -11.754 17.120 hybrid contribution 0.465 -0.064 1.768 1.829 sum -6.298 10.386 -9.986 15.724 Atomic orbital electron populations 1.22489 0.86766 1.02825 1.00761 1.62043 1.08572 1.14251 1.42533 1.22501 1.01476 0.88173 1.00754 1.21561 0.95029 0.94012 0.91102 1.21626 0.94059 1.00124 0.97975 1.21637 1.00067 0.94749 0.98391 1.21905 0.92948 0.92027 0.87815 1.23133 0.97085 0.99450 0.97154 1.23210 0.97640 0.99539 0.97368 1.19933 0.88267 0.84011 0.89620 1.21985 0.97765 0.98519 1.01361 1.21455 0.92325 1.46896 0.97394 0.92696 1.25745 0.97978 0.94003 0.99292 1.70103 1.21871 1.45909 1.14925 0.85658 0.80335 0.77682 0.78804 1.19062 1.21032 1.20281 1.88716 1.69480 1.41709 1.30442 1.21721 0.95063 0.99832 0.98355 1.21518 1.00336 0.93770 0.97873 0.95991 0.90048 0.90891 0.90754 0.90082 0.95980 0.95405 0.90642 0.90266 0.93582 0.92727 0.89032 0.91021 0.91123 0.92565 0.94551 0.92193 0.95343 0.93337 0.92888 0.93702 0.90862 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.21 127.69 1.18 1.52 16 2 N -0.55 -11.64 4.89 -923.28 -4.51 -16.15 16 3 C 0.02 0.33 9.11 127.69 1.16 1.50 16 4 C 0.09 2.29 1.94 44.91 0.09 2.37 16 5 C -0.10 -2.63 4.62 30.61 0.14 -2.49 16 6 C -0.11 -3.82 5.10 30.55 0.16 -3.67 16 7 C 0.09 3.63 0.99 -10.50 -0.01 3.62 16 8 C -0.13 -4.56 4.39 31.81 0.14 -4.42 16 9 C -0.14 -5.80 6.01 32.07 0.19 -5.61 16 10 C 0.22 11.13 0.73 -10.87 -0.01 11.12 16 11 C -0.14 -6.90 8.62 71.98 0.62 -6.28 16 12 C -0.54 -30.67 8.30 25.60 0.21 -30.46 16 13 H 0.05 3.06 7.75 -2.91 -0.02 3.03 16 14 C 0.03 1.80 5.28 84.65 0.45 2.25 16 15 N -0.89 -52.82 10.97 21.45 0.24 -52.58 16 16 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 O -0.38 -19.92 9.74 -148.98 -1.45 -21.37 16 21 C -0.11 -3.88 4.96 30.54 0.15 -3.73 16 22 C -0.10 -2.57 4.75 30.61 0.15 -2.43 16 23 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 24 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 25 H 0.07 1.28 6.30 -2.39 -0.02 1.27 16 26 H 0.07 1.29 6.23 -2.39 -0.01 1.27 16 27 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.74 6.33 -2.38 -0.02 1.73 16 31 H 0.08 2.01 6.14 -2.39 -0.01 2.00 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.71 5.80 -2.39 -0.01 2.70 16 35 H 0.07 2.36 7.25 -2.39 -0.02 2.35 16 36 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 37 H 0.06 2.35 8.03 -2.38 -0.02 2.33 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 3.37 5.93 -2.39 -0.01 3.36 16 40 H 0.03 1.26 7.31 -2.38 -0.02 1.24 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.05 1.95 7.90 -2.39 -0.02 1.94 16 43 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.07 1.72 6.39 -2.39 -0.02 1.71 16 45 H 0.08 1.98 7.06 -2.39 -0.02 1.96 16 Total: -1.00 -63.81 328.47 1.85 -61.95 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.94 Total: 18.37 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 4.61 Total: -36.69 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -4.28 Total: -68.73 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.45 Total: -21.37 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.81 1.85 -61.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715295303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.044 kcal (2) G-P(sol) polarization free energy of solvation -63.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds