Wall clock time and date at job start Mon Mar 30 2020 07:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.54052 * 2 1 4 4 C 1.54099 * 110.48988 * 122.61909 * 2 1 3 5 5 O 1.43744 * 107.41990 * 120.63248 * 4 2 1 6 6 C 1.44579 * 106.87003 * 333.67244 * 5 4 2 7 7 H 1.09002 * 110.63684 * 281.31539 * 6 5 4 8 8 C 1.53001 * 110.63988 * 158.44592 * 6 5 4 9 9 C 1.53001 * 109.47026 * 70.80045 * 8 6 5 10 10 N 1.46901 * 109.47068 * 179.97438 * 9 8 6 11 11 C 1.46891 * 111.00274 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47644 * 185.35299 * 11 10 9 13 13 C 1.50697 * 115.55130 * 65.04300 * 12 11 10 14 14 H 1.08007 * 120.00375 * 265.45111 * 13 12 11 15 15 C 1.37880 * 119.99972 * 85.45126 * 13 12 11 16 16 N 1.31511 * 119.99968 * 353.59426 * 15 13 12 17 17 Si 1.86807 * 120.00014 * 173.59812 * 15 13 12 18 18 H 1.48498 * 109.47119 * 90.00107 * 17 15 13 19 19 H 1.48499 * 109.46911 * 209.99786 * 17 15 13 20 20 H 1.48499 * 109.46847 * 329.99515 * 17 15 13 21 21 C 1.52998 * 117.49643 * 279.37893 * 12 11 10 22 22 C 1.52998 * 117.50248 * 210.71816 * 12 11 10 23 23 C 1.54814 * 110.48659 * 237.38765 * 2 1 3 24 24 H 1.09005 * 109.47117 * 298.83231 * 1 2 3 25 25 H 1.09001 * 109.47386 * 58.83512 * 1 2 3 26 26 H 1.08997 * 109.46979 * 178.83407 * 1 2 3 27 27 H 1.08993 * 109.46925 * 181.16419 * 3 2 1 28 28 H 1.08995 * 109.47137 * 301.16428 * 3 2 1 29 29 H 1.09004 * 109.46415 * 61.16609 * 3 2 1 30 30 H 1.08997 * 109.87840 * 240.12543 * 4 2 1 31 31 H 1.08993 * 109.87909 * 1.13147 * 4 2 1 32 32 H 1.08999 * 109.46966 * 190.79702 * 8 6 5 33 33 H 1.08990 * 109.47088 * 310.79687 * 8 6 5 34 34 H 1.08999 * 109.46968 * 299.99655 * 9 8 6 35 35 H 1.09003 * 109.47321 * 60.00030 * 9 8 6 36 36 H 1.00907 * 110.99853 * 303.95301 * 10 9 8 37 37 H 1.09011 * 109.47166 * 305.34903 * 11 10 9 38 38 H 1.08999 * 109.47533 * 65.35100 * 11 10 9 39 39 H 0.97005 * 120.00026 * 180.02562 * 16 15 13 40 40 H 1.08997 * 117.49978 * 359.97438 * 21 12 11 41 41 H 1.09006 * 117.50187 * 145.01406 * 21 12 11 42 42 H 1.08999 * 117.50109 * 214.97262 * 22 12 11 43 43 H 1.09005 * 117.49713 * 359.97438 * 22 12 11 44 44 H 1.08995 * 110.90674 * 20.40027 * 23 2 1 45 45 H 1.09003 * 110.90464 * 143.96884 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 6 2.0694 -0.7781 1.2158 5 8 2.8746 -1.8575 0.7132 6 6 2.3781 -2.1715 -0.6079 7 1 1.4703 -2.7716 -0.5446 8 6 3.4466 -2.8985 -1.4269 9 6 3.6387 -4.3121 -0.8741 10 7 4.6641 -5.0104 -1.6609 11 6 4.8755 -6.3743 -1.1580 12 6 6.0384 -7.0217 -1.9124 13 6 7.3872 -6.3846 -1.6981 14 1 7.7481 -5.6382 -2.3903 15 6 8.1606 -6.7545 -0.6182 16 7 7.6721 -7.5676 0.2927 17 14 9.9023 -6.1006 -0.4490 18 1 9.8813 -4.8290 0.3176 19 1 10.7376 -7.0972 0.2681 20 1 10.4724 -5.8560 -1.7982 21 6 5.7451 -7.6062 -3.2956 22 6 5.9967 -8.5385 -2.1079 23 6 2.0718 -0.7816 -1.2216 24 1 -0.3633 0.4956 0.9003 25 1 -0.3634 0.5318 -0.8793 26 1 -0.3633 -1.0274 -0.0209 27 1 3.1564 1.4125 -0.0209 28 1 1.6963 1.9596 -0.8793 29 1 1.7301 1.9468 0.9003 30 1 2.6774 -0.1203 1.8368 31 1 1.2392 -1.1757 1.7995 32 1 3.1297 -2.9556 -2.4683 33 1 4.3875 -2.3523 -1.3629 34 1 3.9556 -4.2550 0.1673 35 1 2.6976 -4.8584 -0.9381 36 1 4.4238 -5.0199 -2.6408 37 1 5.1086 -6.3371 -0.0937 38 1 3.9707 -6.9624 -1.3114 39 1 8.2160 -7.8275 1.0526 40 1 4.7235 -7.5299 -3.6679 41 1 6.5278 -7.5302 -4.0505 42 1 6.9449 -9.0756 -2.0819 43 1 5.1409 -9.0754 -1.6987 44 1 1.3140 -0.8590 -2.0011 45 1 2.9793 -0.3181 -1.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717273474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:30 Heat of formation + Delta-G solvation = -40.663224 kcal Electronic energy + Delta-G solvation = -20639.893414 eV Core-core repulsion = 17657.259539 eV Total energy + Delta-G solvation = -2982.633875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01692 -37.03517 -35.24186 -34.40598 -31.86298 -31.61034 -28.08401 -27.65846 -26.07250 -25.47695 -24.14280 -21.96402 -20.99776 -20.81860 -19.46706 -18.84064 -16.59702 -15.96008 -15.67550 -15.23544 -14.81516 -14.37691 -14.25390 -13.81836 -13.75395 -13.58305 -13.42152 -13.15952 -12.71982 -12.56247 -12.08789 -11.91039 -11.70242 -11.50470 -11.27043 -11.09150 -10.92869 -10.84500 -10.82329 -10.64909 -10.59002 -10.36096 -10.31217 -10.07717 -9.59046 -9.33957 -8.70321 -8.27921 -7.97490 -7.42399 -5.86823 -3.87863 3.41340 3.47287 3.50855 3.85105 4.21937 4.45411 4.55547 4.62703 4.73475 5.02762 5.07374 5.13161 5.29959 5.38842 5.40806 5.42902 5.44663 5.51176 5.54736 5.56157 5.63684 5.71679 5.81298 5.86244 5.87658 5.97824 6.02349 6.08023 6.24198 6.40282 6.46227 6.54091 6.59060 6.75040 6.81064 6.96914 6.99666 7.19518 7.54891 7.68675 8.05821 8.07313 8.28958 8.65520 9.10796 9.74846 11.23243 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.003750 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.977377 B = 7465.269881 C = 8119.903227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.053 3.947 5 O -0.366 6.366 6 C 0.080 3.920 7 H 0.065 0.935 8 C -0.110 4.110 9 C 0.063 3.937 10 N -0.670 5.670 11 C 0.108 3.892 12 C 0.054 3.946 13 C -0.469 4.469 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.216 4.216 22 C -0.159 4.159 23 C -0.141 4.141 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.326 0.674 37 H 0.076 0.924 38 H -0.008 1.008 39 H 0.256 0.744 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 14.183 -1.296 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.024 4.024 5 O -0.285 6.285 6 C 0.022 3.978 7 H 0.083 0.917 8 C -0.147 4.147 9 C -0.066 4.066 10 N -0.299 5.299 11 C -0.021 4.021 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.077 0.923 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.254 4.254 22 C -0.198 4.198 23 C -0.179 4.179 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.010 0.990 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.010 14.244 -0.635 19.989 hybrid contribution -0.141 -0.093 -0.141 0.220 sum -14.151 14.151 -0.776 20.027 Atomic orbital electron populations 1.21866 0.93673 1.02006 1.01957 1.21955 0.96185 0.96493 0.95653 1.21841 1.01294 0.94452 1.01793 1.23273 0.94923 0.88849 0.95338 1.89020 1.56222 1.52082 1.31163 1.23175 0.96752 0.94905 0.82979 0.91666 1.21595 0.98900 0.96426 0.97808 1.21879 0.92695 0.92690 0.99363 1.60255 1.45103 1.18981 1.05554 1.21531 0.94089 0.85724 1.00716 1.18823 0.94408 0.90894 0.90590 1.20305 0.98876 1.21835 1.09656 0.92296 1.24938 0.97861 0.95099 0.95589 1.70012 1.36209 1.35117 1.11083 0.86666 0.85121 0.78559 0.78036 1.20753 1.21513 1.20032 1.22988 0.98720 1.10112 0.93549 1.22515 1.00220 0.95575 1.01439 1.23301 1.01813 0.95581 0.97204 0.92393 0.92313 0.92405 0.92051 0.92421 0.92513 0.90064 0.92632 0.91098 0.89991 0.90764 0.96977 0.85693 0.90592 0.98987 0.93385 0.92280 0.90556 0.90089 0.92220 0.90372 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.26 37.16 0.31 -0.71 16 2 C -0.10 -0.91 0.99 -152.98 -0.15 -1.06 16 3 C -0.14 -1.06 8.27 37.16 0.31 -0.76 16 4 C 0.05 0.58 7.03 37.73 0.27 0.85 16 5 O -0.37 -5.34 11.10 -35.23 -0.39 -5.73 16 6 C 0.08 0.99 3.29 -25.68 -0.08 0.91 16 7 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.11 -1.55 5.23 -26.73 -0.14 -1.69 16 9 C 0.06 1.10 5.62 -3.82 -0.02 1.08 16 10 N -0.67 -13.66 6.38 -113.78 -0.73 -14.39 16 11 C 0.11 2.52 5.51 -3.83 -0.02 2.50 16 12 C 0.05 1.35 1.55 -155.67 -0.24 1.11 16 13 C -0.47 -13.15 8.74 -34.44 -0.30 -13.46 16 14 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 15 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 16 N -0.89 -25.90 12.92 55.43 0.72 -25.19 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.22 -4.82 9.96 -26.69 -0.27 -5.08 16 22 C -0.16 -3.86 9.41 -26.69 -0.25 -4.11 16 23 C -0.14 -1.39 5.70 -24.72 -0.14 -1.53 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.82 7.69 -51.93 -0.40 0.43 16 31 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.33 6.12 8.79 -39.29 -0.35 5.77 16 37 H 0.08 2.00 8.13 -51.92 -0.42 1.58 16 38 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 45 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -29.94 360.39 -9.51 -39.45 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.68 Total: 3.61 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.83 Total: -20.17 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.01 Total: -39.58 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.39 Total: -5.73 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.94 -9.51 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717273474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.215 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds