Wall clock time and date at job start Mon Mar 30 2020 07:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.54052 * 2 1 4 4 C 1.54099 * 110.48988 * 122.61909 * 2 1 3 5 5 O 1.43744 * 107.41990 * 120.63248 * 4 2 1 6 6 C 1.44579 * 106.87003 * 333.67244 * 5 4 2 7 7 H 1.09002 * 110.63684 * 281.31539 * 6 5 4 8 8 C 1.53001 * 110.63988 * 158.44592 * 6 5 4 9 9 C 1.53001 * 109.47026 * 70.80045 * 8 6 5 10 10 N 1.46901 * 109.47068 * 179.97438 * 9 8 6 11 11 C 1.46891 * 111.00274 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47644 * 185.35299 * 11 10 9 13 13 C 1.50697 * 115.55130 * 65.04300 * 12 11 10 14 14 H 1.08007 * 120.00375 * 265.45111 * 13 12 11 15 15 C 1.37880 * 119.99972 * 85.45126 * 13 12 11 16 16 N 1.31511 * 119.99968 * 353.59426 * 15 13 12 17 17 Si 1.86807 * 120.00014 * 173.59812 * 15 13 12 18 18 H 1.48498 * 109.47119 * 90.00107 * 17 15 13 19 19 H 1.48499 * 109.46911 * 209.99786 * 17 15 13 20 20 H 1.48499 * 109.46847 * 329.99515 * 17 15 13 21 21 C 1.52998 * 117.49643 * 279.37893 * 12 11 10 22 22 C 1.52998 * 117.50248 * 210.71816 * 12 11 10 23 23 C 1.54814 * 110.48659 * 237.38765 * 2 1 3 24 24 H 1.09005 * 109.47117 * 298.83231 * 1 2 3 25 25 H 1.09001 * 109.47386 * 58.83512 * 1 2 3 26 26 H 1.08997 * 109.46979 * 178.83407 * 1 2 3 27 27 H 1.08993 * 109.46925 * 181.16419 * 3 2 1 28 28 H 1.08995 * 109.47137 * 301.16428 * 3 2 1 29 29 H 1.09004 * 109.46415 * 61.16609 * 3 2 1 30 30 H 1.08997 * 109.87840 * 240.12543 * 4 2 1 31 31 H 1.08993 * 109.87909 * 1.13147 * 4 2 1 32 32 H 1.08999 * 109.46966 * 190.79702 * 8 6 5 33 33 H 1.08990 * 109.47088 * 310.79687 * 8 6 5 34 34 H 1.08999 * 109.46968 * 299.99655 * 9 8 6 35 35 H 1.09003 * 109.47321 * 60.00030 * 9 8 6 36 36 H 1.00907 * 110.99853 * 303.95301 * 10 9 8 37 37 H 1.09011 * 109.47166 * 305.34903 * 11 10 9 38 38 H 1.08999 * 109.47533 * 65.35100 * 11 10 9 39 39 H 0.97005 * 120.00026 * 180.02562 * 16 15 13 40 40 H 1.08997 * 117.49978 * 359.97438 * 21 12 11 41 41 H 1.09006 * 117.50187 * 145.01406 * 21 12 11 42 42 H 1.08999 * 117.50109 * 214.97262 * 22 12 11 43 43 H 1.09005 * 117.49713 * 359.97438 * 22 12 11 44 44 H 1.08995 * 110.90674 * 20.40027 * 23 2 1 45 45 H 1.09003 * 110.90464 * 143.96884 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 6 2.0694 -0.7781 1.2158 5 8 2.8746 -1.8575 0.7132 6 6 2.3781 -2.1715 -0.6079 7 1 1.4703 -2.7716 -0.5446 8 6 3.4466 -2.8985 -1.4269 9 6 3.6387 -4.3121 -0.8741 10 7 4.6641 -5.0104 -1.6609 11 6 4.8755 -6.3743 -1.1580 12 6 6.0384 -7.0217 -1.9124 13 6 7.3872 -6.3846 -1.6981 14 1 7.7481 -5.6382 -2.3903 15 6 8.1606 -6.7545 -0.6182 16 7 7.6721 -7.5676 0.2927 17 14 9.9023 -6.1006 -0.4490 18 1 9.8813 -4.8290 0.3176 19 1 10.7376 -7.0972 0.2681 20 1 10.4724 -5.8560 -1.7982 21 6 5.7451 -7.6062 -3.2956 22 6 5.9967 -8.5385 -2.1079 23 6 2.0718 -0.7816 -1.2216 24 1 -0.3633 0.4956 0.9003 25 1 -0.3634 0.5318 -0.8793 26 1 -0.3633 -1.0274 -0.0209 27 1 3.1564 1.4125 -0.0209 28 1 1.6963 1.9596 -0.8793 29 1 1.7301 1.9468 0.9003 30 1 2.6774 -0.1203 1.8368 31 1 1.2392 -1.1757 1.7995 32 1 3.1297 -2.9556 -2.4683 33 1 4.3875 -2.3523 -1.3629 34 1 3.9556 -4.2550 0.1673 35 1 2.6976 -4.8584 -0.9381 36 1 4.4238 -5.0199 -2.6408 37 1 5.1086 -6.3371 -0.0937 38 1 3.9707 -6.9624 -1.3114 39 1 8.2160 -7.8275 1.0526 40 1 4.7235 -7.5299 -3.6679 41 1 6.5278 -7.5302 -4.0505 42 1 6.9449 -9.0756 -2.0819 43 1 5.1409 -9.0754 -1.6987 44 1 1.3140 -0.8590 -2.0011 45 1 2.9793 -0.3181 -1.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717273474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:29 Heat of formation + Delta-G solvation = -58.516097 kcal Electronic energy + Delta-G solvation = -20640.667572 eV Core-core repulsion = 17657.259539 eV Total energy + Delta-G solvation = -2983.408034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89345 -38.85529 -36.60533 -35.41665 -33.91293 -32.94682 -29.25230 -28.23549 -27.57592 -26.84508 -25.73212 -23.39264 -22.72328 -21.98825 -20.84617 -20.19774 -18.11214 -17.43353 -16.69623 -16.61246 -16.30498 -16.10030 -15.40987 -15.32371 -14.87490 -14.70759 -14.45689 -14.34785 -14.04565 -13.66240 -13.51445 -13.15032 -12.87709 -12.83946 -12.70064 -12.53227 -12.36651 -12.35268 -12.16239 -12.00887 -11.99408 -11.60618 -11.55437 -11.41729 -11.15819 -10.72108 -10.54158 -10.36003 -9.90481 -9.05537 -8.03042 -6.09242 1.42545 1.44015 1.53134 2.48427 2.97002 3.21179 3.27203 3.51021 3.63994 3.82298 3.90153 4.08134 4.12865 4.28498 4.32240 4.40711 4.42724 4.52812 4.61608 4.70366 4.71573 4.73831 4.77804 4.80017 4.80982 4.88493 4.97127 5.00536 5.02760 5.07293 5.10938 5.17043 5.23980 5.29005 5.31201 5.32066 5.43638 5.65321 5.75841 5.88682 6.05209 6.35299 6.52348 6.79902 6.94564 7.55939 9.06191 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.003750 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.977377 B = 7465.269881 C = 8119.903227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.045 3.955 5 O -0.404 6.404 6 C 0.077 3.923 7 H 0.073 0.927 8 C -0.100 4.100 9 C 0.068 3.932 10 N -0.681 5.681 11 C 0.123 3.877 12 C 0.024 3.976 13 C -0.481 4.481 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.945 3.055 18 H -0.283 1.283 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.184 4.184 22 C -0.167 4.167 23 C -0.136 4.136 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.027 0.973 36 H 0.340 0.660 37 H 0.035 0.965 38 H 0.007 0.993 39 H 0.255 0.745 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 15.522 -2.679 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.032 4.032 5 O -0.324 6.324 6 C 0.020 3.980 7 H 0.091 0.909 8 C -0.138 4.138 9 C -0.061 4.061 10 N -0.312 5.312 11 C -0.006 4.006 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.772 3.228 18 H -0.209 1.209 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.222 4.222 22 C -0.206 4.206 23 C -0.173 4.173 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.158 0.842 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.478 15.595 -2.037 22.066 hybrid contribution 0.298 -0.509 0.300 0.662 sum -15.180 15.086 -1.737 21.472 Atomic orbital electron populations 1.21853 0.92163 1.02171 1.03027 1.21947 0.97304 0.96565 0.93982 1.21831 1.00535 0.93936 1.02910 1.23482 0.94878 0.88420 0.96418 1.88985 1.57589 1.53455 1.32345 1.23237 0.96052 0.96383 0.82353 0.90874 1.21520 0.98812 0.94021 0.99406 1.21841 0.92240 0.94575 0.97444 1.60130 1.46935 1.17517 1.06611 1.21173 0.93966 0.87443 0.98059 1.18914 0.94029 0.91354 0.93396 1.20568 1.00457 1.21583 1.09300 0.93341 1.25619 1.01295 0.95585 0.95480 1.70120 1.37316 1.36365 1.11501 0.85758 0.81103 0.77804 0.78145 1.20885 1.21079 1.19247 1.22977 1.00490 1.06631 0.92059 1.22440 0.99609 0.95149 1.03359 1.23282 1.02290 0.93817 0.97946 0.91578 0.91032 0.92701 0.93248 0.91186 0.91532 0.89990 0.92002 0.88635 0.92030 0.93918 0.95449 0.84229 0.94688 0.97529 0.93580 0.89098 0.90448 0.92419 0.91123 0.88292 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.26 71.98 0.59 -1.02 16 2 C -0.10 -1.55 0.99 -51.19 -0.05 -1.60 16 3 C -0.13 -1.84 8.27 71.98 0.60 -1.24 16 4 C 0.04 0.94 7.03 72.35 0.51 1.45 16 5 O -0.40 -11.85 11.10 -148.98 -1.65 -13.50 16 6 C 0.08 1.84 3.29 31.28 0.10 1.94 16 7 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 8 C -0.10 -2.73 5.23 30.60 0.16 -2.57 16 9 C 0.07 2.36 5.62 86.30 0.49 2.85 16 10 N -0.68 -27.51 6.38 -513.89 -3.28 -30.79 16 11 C 0.12 5.75 5.51 86.30 0.48 6.22 16 12 C 0.02 1.19 1.55 -52.93 -0.08 1.11 16 13 C -0.48 -27.23 8.74 25.60 0.22 -27.01 16 14 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 15 C 0.02 1.08 5.39 84.66 0.46 1.54 16 16 N -0.91 -54.58 12.92 21.45 0.28 -54.31 16 17 Si 0.95 45.73 29.54 68.60 2.03 47.76 16 18 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 C -0.18 -7.85 9.96 30.62 0.30 -7.54 16 22 C -0.17 -8.05 9.41 30.62 0.29 -7.76 16 23 C -0.14 -2.40 5.70 31.89 0.18 -2.22 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.08 1.65 7.69 -2.39 -0.02 1.63 16 31 H 0.06 1.19 7.69 -2.39 -0.02 1.17 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.73 8.06 -2.39 -0.02 1.71 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.34 12.13 8.79 -89.69 -0.79 11.34 16 37 H 0.03 1.90 8.13 -2.38 -0.02 1.88 16 38 H 0.01 0.29 8.09 -2.39 -0.02 0.27 16 39 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 40 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 42 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 3.18 8.14 -2.38 -0.02 3.17 16 44 H 0.10 1.34 7.86 -2.39 -0.02 1.32 16 45 H 0.08 1.42 7.78 -2.39 -0.02 1.40 16 Total: -1.00 -65.16 360.39 1.75 -63.41 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.14 Total: 23.30 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.24 Total: -35.86 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -3.00 Total: -85.09 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.65 Total: -13.50 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -65.16 1.75 -63.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717273474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.889 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds