Wall clock time and date at job start Mon Mar 30 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99494 * 2 1 4 4 H 1.48502 * 109.47206 * 269.99776 * 3 2 1 5 5 H 1.48495 * 109.47343 * 30.00066 * 3 2 1 6 6 H 1.48503 * 109.46683 * 149.99852 * 3 2 1 7 7 C 1.37875 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00255 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47113 * 180.02562 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53142 * 109.42650 * 295.25629 * 15 14 13 17 17 C 1.53707 * 108.89365 * 185.90659 * 16 15 14 18 18 H 1.08990 * 112.61936 * 188.04129 * 17 16 15 19 19 C 1.54607 * 107.81014 * 312.38097 * 17 16 15 20 20 C 1.55891 * 104.99504 * 88.53488 * 19 17 16 21 21 C 1.54602 * 104.07635 * 0.02992 * 20 19 17 22 22 H 1.09002 * 112.22099 * 147.26606 * 21 20 19 23 23 C 1.53132 * 109.42938 * 174.99887 * 15 14 13 24 24 N 1.48715 * 107.23636 * 64.08714 * 17 16 15 25 25 H 0.97000 * 120.00443 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47185 * 60.00097 * 9 7 2 27 27 H 1.08995 * 109.46894 * 300.00042 * 9 7 2 28 28 H 1.08997 * 109.47562 * 60.00381 * 10 9 7 29 29 H 1.08998 * 109.47270 * 299.99297 * 10 9 7 30 30 H 1.09007 * 109.46516 * 59.99962 * 11 10 9 31 31 H 1.09004 * 109.47113 * 300.00431 * 11 10 9 32 32 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 33 33 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 34 34 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 35 35 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 36 36 H 1.08995 * 109.43010 * 55.10150 * 15 14 13 37 37 H 1.08993 * 109.57005 * 305.73690 * 16 15 14 38 38 H 1.09009 * 109.56445 * 66.08799 * 16 15 14 39 39 H 1.08998 * 110.36524 * 207.39391 * 19 17 16 40 40 H 1.09001 * 110.36905 * 329.60226 * 19 17 16 41 41 H 1.09000 * 110.92140 * 241.34700 * 20 19 17 42 42 H 1.09006 * 110.54844 * 118.52262 * 20 19 17 43 43 H 1.08998 * 109.56884 * 293.91100 * 23 15 14 44 44 H 1.09001 * 109.56909 * 54.14932 * 23 15 14 45 45 H 1.00905 * 111.00153 * 46.56572 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5517 -2.6364 0.0022 12 8 6.0280 -3.9836 0.0027 13 6 7.4526 -4.0963 0.0033 14 6 7.8471 -5.5746 0.0031 15 6 9.3724 -5.6953 0.0044 16 6 9.9299 -5.1208 -1.3011 17 6 11.4438 -5.3814 -1.3532 18 1 11.9276 -4.8766 -2.1892 19 6 12.0430 -4.9618 0.0089 20 6 11.9426 -6.2348 0.9031 21 6 11.2916 -7.2915 -0.0188 22 1 11.6458 -8.2998 0.1955 23 6 9.7666 -7.1697 0.1301 24 7 11.6359 -6.8554 -1.3983 25 1 -0.4851 0.8400 0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1496 0.8925 30 1 5.9149 -2.1218 0.8919 31 1 5.9150 -2.1232 -0.8882 32 1 7.8551 -3.6126 0.8933 33 1 7.8557 -3.6130 -0.8867 34 1 7.4441 -6.0583 0.8929 35 1 7.4448 -6.0580 -0.8870 36 1 9.7795 -5.1380 0.8480 37 1 9.4466 -5.6057 -2.1492 38 1 9.7428 -4.0475 -1.3369 39 1 13.0848 -4.6645 -0.1104 40 1 11.4641 -4.1466 0.4431 41 1 11.3124 -6.0507 1.7731 42 1 12.9344 -6.5627 1.2146 43 1 9.4640 -7.5465 1.1071 44 1 9.2743 -7.7472 -0.6523 45 1 11.0204 -7.2797 -2.0759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718848086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:28 Heat of formation + Delta-G solvation = -73.955477 kcal Electronic energy + Delta-G solvation = -20291.148455 eV Core-core repulsion = 17307.070920 eV Total energy + Delta-G solvation = -2984.077535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00681 -37.90078 -34.85352 -33.71278 -31.74929 -31.65670 -30.71790 -29.02066 -26.88379 -24.69969 -23.62717 -22.63812 -21.39397 -20.58006 -20.04564 -19.58269 -17.02148 -16.82083 -16.41677 -15.93197 -15.79407 -14.63156 -14.42722 -14.17911 -14.04112 -13.98579 -13.21710 -13.00803 -12.85091 -12.75053 -12.61113 -12.32202 -12.05843 -11.76914 -11.62266 -11.46084 -11.37237 -11.30775 -10.86736 -10.76369 -10.71528 -10.65719 -10.45325 -10.02981 -9.83964 -9.67714 -9.29652 -9.19998 -8.77917 -8.54591 -6.04613 -4.02908 3.29691 3.36939 3.40196 3.77277 3.85897 4.20533 4.31133 4.44270 4.55543 4.62725 4.70890 4.74886 4.88804 4.97552 5.05852 5.07390 5.23873 5.28745 5.29718 5.38271 5.49443 5.54526 5.58087 5.59483 5.60357 5.67809 5.70568 5.75437 5.77885 5.83976 5.88688 6.02635 6.04535 6.13738 6.42094 6.51385 6.52286 6.87019 6.96186 7.26485 7.40155 7.50596 7.78748 8.54066 9.00637 9.57229 11.08851 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.002638 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.225834 B =10612.354005 C =10909.697834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.061 3.939 12 O -0.391 6.391 13 C 0.061 3.939 14 C -0.113 4.113 15 C -0.086 4.086 16 C -0.148 4.148 17 C 0.063 3.937 18 H 0.097 0.903 19 C -0.120 4.120 20 C -0.119 4.119 21 C 0.063 3.937 22 H 0.095 0.905 23 C -0.144 4.144 24 N -0.660 5.660 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.381 -12.866 -0.230 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.015 4.015 12 O -0.311 6.311 13 C -0.016 4.016 14 C -0.151 4.151 15 C -0.104 4.104 16 C -0.187 4.187 17 C -0.046 4.046 18 H 0.115 0.885 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.047 4.047 22 H 0.113 0.887 23 C -0.183 4.183 24 N -0.288 5.288 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.855 -12.937 -0.189 29.809 hybrid contribution -0.619 1.320 0.003 1.458 sum 26.236 -11.617 -0.186 28.693 Atomic orbital electron populations 1.69916 1.06281 1.26891 1.51135 1.25037 0.94762 0.99176 0.94590 0.86762 0.80329 0.83594 0.78500 1.20268 1.21331 1.19063 1.21113 0.89290 0.94597 1.50779 0.90894 1.19519 0.97383 0.91653 0.96291 1.21456 0.89954 1.00069 1.02321 1.22783 0.97351 0.82073 0.99291 1.87889 1.19864 1.27953 1.95361 1.22455 0.82674 0.96770 0.99677 1.21563 0.94489 0.95740 1.03285 1.21215 0.94652 0.96198 0.98375 1.22531 0.96338 1.01992 0.97818 1.22862 0.93908 0.89606 0.98263 0.88529 1.22652 1.01067 0.97549 0.94519 1.22653 1.00800 0.94722 0.97527 1.22846 0.93009 0.99111 0.89696 0.88670 1.22445 0.96758 0.96334 1.02759 1.63935 1.55215 1.04642 1.05034 0.92712 0.96553 0.96981 0.92022 0.91983 0.93941 0.93963 0.93944 0.93688 0.91096 0.91259 0.90337 0.91562 0.91058 0.91440 0.91132 0.91011 0.91399 0.91191 0.91634 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.11 5.52 -26.73 -0.15 -2.26 16 11 C 0.06 1.07 5.94 37.16 0.22 1.29 16 12 O -0.39 -6.54 10.34 -35.23 -0.36 -6.90 16 13 C 0.06 0.76 5.69 37.16 0.21 0.97 16 14 C -0.11 -1.16 5.05 -26.73 -0.14 -1.30 16 15 C -0.09 -0.69 1.83 -90.48 -0.17 -0.85 16 16 C -0.15 -1.14 4.33 -26.29 -0.11 -1.26 16 17 C 0.06 0.47 4.59 -65.49 -0.30 0.17 16 18 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 19 C -0.12 -0.84 6.00 -24.34 -0.15 -0.99 16 20 C -0.12 -0.81 6.08 -24.35 -0.15 -0.96 16 21 C 0.06 0.44 4.54 -65.49 -0.30 0.14 16 22 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 23 C -0.14 -1.03 4.73 -26.29 -0.12 -1.15 16 24 N -0.66 -5.02 7.40 -94.68 -0.70 -5.73 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.52 6.69 -51.93 -0.35 0.18 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.64 5.53 -51.93 -0.29 0.35 16 37 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.07 0.57 6.87 -51.92 -0.36 0.22 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.49 7.04 -51.93 -0.37 0.12 16 41 H 0.07 0.47 7.07 -51.93 -0.37 0.10 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.04 -51.93 -0.42 0.06 16 45 H 0.34 2.35 8.24 -39.29 -0.32 2.02 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -31.12 339.72 -9.84 -40.96 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.31 Total: -2.99 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.69 Total: -20.23 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.07 Total: -33.15 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.36 Total: -6.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.12 -9.84 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718848086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.994 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds