Wall clock time and date at job start Mon Mar 30 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99494 * 2 1 4 4 H 1.48502 * 109.47206 * 269.99776 * 3 2 1 5 5 H 1.48495 * 109.47343 * 30.00066 * 3 2 1 6 6 H 1.48503 * 109.46683 * 149.99852 * 3 2 1 7 7 C 1.37875 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00255 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47113 * 180.02562 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53142 * 109.42650 * 295.25629 * 15 14 13 17 17 C 1.53707 * 108.89365 * 185.90659 * 16 15 14 18 18 H 1.08990 * 112.61936 * 188.04129 * 17 16 15 19 19 C 1.54607 * 107.81014 * 312.38097 * 17 16 15 20 20 C 1.55891 * 104.99504 * 88.53488 * 19 17 16 21 21 C 1.54602 * 104.07635 * 0.02992 * 20 19 17 22 22 H 1.09002 * 112.22099 * 147.26606 * 21 20 19 23 23 C 1.53132 * 109.42938 * 174.99887 * 15 14 13 24 24 N 1.48715 * 107.23636 * 64.08714 * 17 16 15 25 25 H 0.97000 * 120.00443 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47185 * 60.00097 * 9 7 2 27 27 H 1.08995 * 109.46894 * 300.00042 * 9 7 2 28 28 H 1.08997 * 109.47562 * 60.00381 * 10 9 7 29 29 H 1.08998 * 109.47270 * 299.99297 * 10 9 7 30 30 H 1.09007 * 109.46516 * 59.99962 * 11 10 9 31 31 H 1.09004 * 109.47113 * 300.00431 * 11 10 9 32 32 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 33 33 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 34 34 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 35 35 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 36 36 H 1.08995 * 109.43010 * 55.10150 * 15 14 13 37 37 H 1.08993 * 109.57005 * 305.73690 * 16 15 14 38 38 H 1.09009 * 109.56445 * 66.08799 * 16 15 14 39 39 H 1.08998 * 110.36524 * 207.39391 * 19 17 16 40 40 H 1.09001 * 110.36905 * 329.60226 * 19 17 16 41 41 H 1.09000 * 110.92140 * 241.34700 * 20 19 17 42 42 H 1.09006 * 110.54844 * 118.52262 * 20 19 17 43 43 H 1.08998 * 109.56884 * 293.91100 * 23 15 14 44 44 H 1.09001 * 109.56909 * 54.14932 * 23 15 14 45 45 H 1.00905 * 111.00153 * 46.56572 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5517 -2.6364 0.0022 12 8 6.0280 -3.9836 0.0027 13 6 7.4526 -4.0963 0.0033 14 6 7.8471 -5.5746 0.0031 15 6 9.3724 -5.6953 0.0044 16 6 9.9299 -5.1208 -1.3011 17 6 11.4438 -5.3814 -1.3532 18 1 11.9276 -4.8766 -2.1892 19 6 12.0430 -4.9618 0.0089 20 6 11.9426 -6.2348 0.9031 21 6 11.2916 -7.2915 -0.0188 22 1 11.6458 -8.2998 0.1955 23 6 9.7666 -7.1697 0.1301 24 7 11.6359 -6.8554 -1.3983 25 1 -0.4851 0.8400 0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1496 0.8925 30 1 5.9149 -2.1218 0.8919 31 1 5.9150 -2.1232 -0.8882 32 1 7.8551 -3.6126 0.8933 33 1 7.8557 -3.6130 -0.8867 34 1 7.4441 -6.0583 0.8929 35 1 7.4448 -6.0580 -0.8870 36 1 9.7795 -5.1380 0.8480 37 1 9.4466 -5.6057 -2.1492 38 1 9.7428 -4.0475 -1.3369 39 1 13.0848 -4.6645 -0.1104 40 1 11.4641 -4.1466 0.4431 41 1 11.3124 -6.0507 1.7731 42 1 12.9344 -6.5627 1.2146 43 1 9.4640 -7.5465 1.1071 44 1 9.2743 -7.7472 -0.6523 45 1 11.0204 -7.2797 -2.0759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718848086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:27 Heat of formation + Delta-G solvation = -93.759661 kcal Electronic energy + Delta-G solvation = -20292.007229 eV Core-core repulsion = 17307.070920 eV Total energy + Delta-G solvation = -2984.936309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59529 -39.11452 -36.14197 -35.19241 -33.66643 -32.26690 -31.26106 -30.09336 -28.53548 -25.31858 -24.69907 -24.12948 -22.29174 -21.72699 -21.10596 -20.17887 -18.97252 -17.74334 -17.45683 -17.05062 -16.64093 -16.22321 -15.59762 -15.40841 -15.11906 -14.75776 -14.62718 -14.22356 -13.82656 -13.63096 -13.49311 -13.38949 -13.13767 -12.89188 -12.72204 -12.61730 -12.21741 -12.18891 -12.11277 -11.94215 -11.79256 -11.66169 -11.59462 -11.34185 -11.32643 -11.25718 -11.12517 -10.78208 -10.51208 -9.35779 -8.30842 -6.36451 1.36125 1.38630 1.50702 2.35822 2.67985 3.03982 3.30283 3.60631 3.69002 3.92359 3.99750 4.02137 4.12009 4.14395 4.24521 4.26711 4.33026 4.41432 4.42489 4.50832 4.52680 4.54515 4.71436 4.76188 4.81853 4.85562 4.93722 4.96644 5.03072 5.06430 5.07431 5.08929 5.15372 5.24282 5.29224 5.31512 5.43106 5.49114 5.52774 5.62130 5.87381 6.23877 6.32980 6.42268 6.71626 7.28042 8.86222 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.002638 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.225834 B =10612.354005 C =10909.697834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.538 4.538 8 H 0.028 0.972 9 C -0.007 4.007 10 C -0.096 4.096 11 C 0.071 3.929 12 O -0.413 6.413 13 C 0.056 3.944 14 C -0.108 4.108 15 C -0.078 4.078 16 C -0.145 4.145 17 C 0.064 3.936 18 H 0.099 0.901 19 C -0.121 4.121 20 C -0.120 4.120 21 C 0.064 3.936 22 H 0.100 0.900 23 C -0.140 4.140 24 N -0.668 5.668 25 H 0.267 0.733 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.114 -11.913 -0.103 31.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.134 4.134 11 C -0.005 4.005 12 O -0.334 6.334 13 C -0.021 4.021 14 C -0.145 4.145 15 C -0.096 4.096 16 C -0.183 4.183 17 C -0.046 4.046 18 H 0.117 0.883 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.046 4.046 22 H 0.118 0.882 23 C -0.179 4.179 24 N -0.297 5.297 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 29.610 -12.011 -0.063 31.954 hybrid contribution -1.522 0.900 -0.045 1.769 sum 28.088 -11.111 -0.108 30.206 Atomic orbital electron populations 1.70080 1.08456 1.28331 1.52437 1.26110 0.95725 1.03859 0.93890 0.85563 0.79538 0.77593 0.79379 1.18919 1.20893 1.16559 1.21471 0.92122 0.93156 1.50862 0.95405 1.19436 0.93957 0.93951 0.97076 1.21282 0.93141 0.97811 1.01148 1.22525 0.94385 0.82933 1.00655 1.87847 1.22580 1.27352 1.95575 1.22712 0.80355 0.98281 1.00708 1.21540 0.96019 0.94324 1.02656 1.21147 0.92851 0.96913 0.98704 1.22493 0.96640 1.01787 0.97429 1.22871 0.93561 0.89547 0.98609 0.88330 1.22670 1.01171 0.97722 0.94335 1.22674 1.01019 0.94505 0.97555 1.22874 0.92729 0.99500 0.89474 0.88164 1.22405 0.96978 0.95635 1.02891 1.63943 1.55466 1.04833 1.05435 0.92386 0.95548 0.95662 0.93288 0.93268 0.92554 0.92525 0.92829 0.92608 0.91643 0.92009 0.89983 0.91938 0.91169 0.91338 0.90889 0.90610 0.91188 0.90874 0.91823 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.96 44.16 27.47 68.60 1.88 46.05 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 7 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 10 C -0.10 -4.00 5.52 30.60 0.17 -3.83 16 11 C 0.07 2.34 5.94 71.99 0.43 2.76 16 12 O -0.41 -13.18 10.34 -148.98 -1.54 -14.73 16 13 C 0.06 1.26 5.69 71.98 0.41 1.67 16 14 C -0.11 -2.06 5.05 30.59 0.15 -1.90 16 15 C -0.08 -1.10 1.83 -10.70 -0.02 -1.12 16 16 C -0.14 -1.98 4.33 30.88 0.13 -1.85 16 17 C 0.06 0.83 4.59 45.35 0.21 1.04 16 18 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 19 C -0.12 -1.47 6.00 32.14 0.19 -1.28 16 20 C -0.12 -1.39 6.08 32.14 0.20 -1.20 16 21 C 0.06 0.78 4.54 45.35 0.21 0.99 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 C -0.14 -1.77 4.73 30.88 0.15 -1.63 16 24 N -0.67 -9.13 7.40 -453.47 -3.36 -12.48 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 27 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.16 6.69 -2.39 -0.02 1.14 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.14 5.53 -2.39 -0.01 1.13 16 37 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 38 H 0.07 0.98 6.87 -2.38 -0.02 0.96 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.85 7.04 -2.39 -0.02 0.83 16 41 H 0.08 0.82 7.07 -2.39 -0.02 0.81 16 42 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.84 8.04 -2.39 -0.02 0.82 16 45 H 0.34 4.28 8.24 -89.69 -0.74 3.54 16 Total: -1.00 -67.26 339.72 0.49 -66.77 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.15 Total: 12.66 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.05 Total: -37.78 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -3.06 Total: -72.97 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.54 Total: -14.73 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Total: -67.26 0.49 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718848086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.988 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds