Wall clock time and date at job start Mon Mar 30 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47380 * 270.00516 * 3 2 1 5 5 H 1.48505 * 109.47038 * 30.00444 * 3 2 1 6 6 H 1.48495 * 109.47087 * 150.00377 * 3 2 1 7 7 C 1.37879 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46806 * 180.02562 * 11 10 9 13 13 N 1.46892 * 109.46760 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99991 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47338 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.99044 * 59.63310 * 15 14 13 17 17 C 1.54101 * 109.87849 * 180.71580 * 15 14 13 18 18 C 1.54809 * 104.18657 * 121.45694 * 17 15 14 19 19 C 1.54990 * 102.09428 * 20.88047 * 18 17 15 20 20 H 1.09003 * 110.75627 * 81.54470 * 19 18 17 21 21 C 1.53006 * 110.62024 * 204.47780 * 19 18 17 22 22 C 1.52997 * 117.49685 * 244.14571 * 21 19 18 23 23 C 1.52998 * 60.00146 * 252.51041 * 22 21 19 24 24 O 1.43746 * 109.87904 * 298.54817 * 15 14 13 25 25 H 0.96995 * 120.00071 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46914 * 60.01119 * 9 7 2 27 27 H 1.08991 * 109.47391 * 300.00794 * 9 7 2 28 28 H 1.08997 * 109.47102 * 60.00157 * 10 9 7 29 29 H 1.09001 * 109.47172 * 300.00112 * 10 9 7 30 30 H 1.09004 * 109.47243 * 60.00341 * 11 10 9 31 31 H 1.09001 * 109.47027 * 299.99809 * 11 10 9 32 32 H 1.08997 * 109.47102 * 59.99765 * 12 11 10 33 33 H 1.09000 * 109.46742 * 300.00039 * 12 11 10 34 34 H 1.00904 * 111.00331 * 303.95388 * 13 12 11 35 35 H 1.09008 * 109.46603 * 60.00006 * 14 13 12 36 36 H 1.09000 * 109.47212 * 299.99990 * 14 13 12 37 37 H 1.09001 * 110.48854 * 240.12839 * 17 15 14 38 38 H 1.08998 * 110.48717 * 2.64843 * 17 15 14 39 39 H 1.09003 * 110.90779 * 262.67799 * 18 17 15 40 40 H 1.09000 * 110.90642 * 139.08198 * 18 17 15 41 41 H 1.09000 * 115.54599 * 29.85065 * 21 19 18 42 42 H 1.09005 * 117.50024 * 359.97438 * 22 21 19 43 43 H 1.09004 * 117.50203 * 145.01687 * 22 21 19 44 44 H 1.09003 * 117.49769 * 252.51646 * 23 22 21 45 45 H 1.08997 * 117.49995 * 107.48741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1501 -0.0005 13 7 1.7401 -7.4222 -0.0018 14 6 2.6646 -8.5639 -0.0018 15 6 1.8645 -9.8680 -0.0025 16 1 1.2286 -9.9146 -0.8865 17 6 2.8257 -11.0724 0.0156 18 6 2.4361 -11.8495 1.2966 19 6 0.9963 -11.3399 1.5603 20 1 0.2776 -11.8738 0.9385 21 6 0.6367 -11.4832 3.0406 22 6 -0.5003 -12.4412 3.4017 23 6 -0.7148 -10.9293 3.4961 24 8 1.0579 -9.9472 1.1847 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8719 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8533 -5.0451 0.8886 32 1 3.1006 -6.0924 0.8899 33 1 3.1019 -6.0922 -0.8901 34 1 1.1028 -7.4726 0.7789 35 1 3.2919 -8.5233 0.8887 36 1 3.2932 -8.5224 -0.8913 37 1 2.6759 -11.6933 -0.8677 38 1 3.8603 -10.7340 0.0720 39 1 3.0975 -11.5922 2.1239 40 1 2.4413 -12.9244 1.1161 41 1 1.4721 -11.4079 3.7367 42 1 -0.9924 -12.9690 2.5848 43 1 -0.4131 -12.9965 4.3357 44 1 -0.7687 -10.4897 4.4921 45 1 -1.3477 -10.4627 2.7412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722333261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:16 Heat of formation + Delta-G solvation = -51.548009 kcal Electronic energy + Delta-G solvation = -19760.120384 eV Core-core repulsion = 16777.014509 eV Total energy + Delta-G solvation = -2983.105875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05991 -37.29955 -36.27128 -34.07587 -32.46987 -32.14017 -30.19725 -27.93083 -25.46188 -23.84736 -22.70773 -22.29942 -21.47207 -20.92022 -20.78623 -19.89395 -16.96369 -16.53101 -16.15563 -15.92820 -15.36915 -14.90905 -14.51876 -14.41599 -14.20165 -13.86238 -13.55860 -12.88279 -12.41805 -12.32020 -12.18657 -11.95528 -11.85054 -11.78625 -11.59212 -11.37340 -11.19795 -10.96394 -10.91991 -10.61194 -10.48239 -10.43023 -10.37165 -10.34804 -9.82202 -9.56269 -9.19507 -8.94597 -8.29582 -8.26792 -5.93332 -3.95382 3.18055 3.35724 3.41496 3.45169 3.84486 4.08954 4.25695 4.28859 4.51430 4.55098 4.66826 4.69916 4.83342 4.96039 5.05352 5.10836 5.20732 5.32920 5.35932 5.41823 5.42816 5.47114 5.57415 5.58548 5.64096 5.68532 5.78616 5.81891 5.89201 5.93430 5.99624 6.23617 6.32402 6.59601 6.75043 6.90440 7.04058 7.13032 7.30933 7.56659 7.76500 7.93178 8.08407 8.51141 9.12252 9.68108 11.18103 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.002507 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.886589 B =11167.423807 C =11799.798711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.059 3.941 13 N -0.689 5.689 14 C 0.063 3.937 15 C 0.078 3.922 16 H 0.076 0.924 17 C -0.153 4.153 18 C -0.146 4.146 19 C 0.107 3.893 20 H 0.069 0.931 21 C -0.153 4.153 22 C -0.176 4.176 23 C -0.165 4.165 24 O -0.363 6.363 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.348 0.652 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -28.412 3.656 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.321 5.321 14 C -0.067 4.067 15 C 0.020 3.980 16 H 0.094 0.906 17 C -0.191 4.191 18 C -0.184 4.184 19 C 0.049 3.951 20 H 0.087 0.913 21 C -0.171 4.171 22 C -0.213 4.213 23 C -0.202 4.202 24 O -0.283 6.283 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.166 0.834 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.968 -28.115 3.081 28.439 hybrid contribution 0.925 0.831 0.795 1.476 sum 3.893 -27.285 3.876 27.832 Atomic orbital electron populations 1.69972 1.06039 1.26476 1.51106 1.25041 0.94851 0.99222 0.95492 0.86607 0.79828 0.83581 0.78056 1.20693 1.21256 1.19943 1.21300 0.93004 0.91241 1.50200 0.92793 1.19096 0.94049 0.91332 0.97172 1.21589 0.99063 0.94012 1.00006 1.21632 0.97883 0.93789 1.02012 1.22069 0.96240 0.88736 0.99902 1.60488 1.19575 1.01352 1.50669 1.22125 0.94221 0.89619 1.00736 1.22819 0.91782 0.94392 0.88993 0.90569 1.22984 1.00763 0.96839 0.98499 1.23124 0.96709 1.00470 0.98057 1.22603 0.95991 0.83172 0.93287 0.91300 1.22231 0.93360 1.05983 0.95531 1.22997 1.01857 0.93238 1.03188 1.22869 0.98806 0.95575 1.02980 1.88927 1.71090 1.24455 1.43780 0.93073 0.96602 0.96709 0.93719 0.93499 0.91678 0.92734 0.95705 0.91453 0.83366 0.94963 0.90196 0.90514 0.90264 0.90450 0.90262 0.87420 0.88727 0.88534 0.88634 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.12 -2.10 5.47 -26.73 -0.15 -2.25 16 12 C 0.06 0.91 5.69 -3.82 -0.02 0.88 16 13 N -0.69 -9.65 6.50 -113.78 -0.74 -10.39 16 14 C 0.06 0.71 5.20 -3.82 -0.02 0.69 16 15 C 0.08 0.79 3.69 -26.16 -0.10 0.69 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.15 -1.14 6.64 -25.20 -0.17 -1.31 16 18 C -0.15 -1.04 6.59 -24.73 -0.16 -1.20 16 19 C 0.11 0.93 3.51 -25.68 -0.09 0.84 16 20 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 21 C -0.15 -1.25 5.51 -90.62 -0.50 -1.75 16 22 C -0.18 -1.19 10.19 -26.73 -0.27 -1.47 16 23 C -0.17 -1.39 10.21 -26.73 -0.27 -1.67 16 24 O -0.36 -4.18 10.26 -35.23 -0.36 -4.54 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.35 5.02 8.19 -39.29 -0.32 4.70 16 35 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 39 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.85 7.96 -51.93 -0.41 0.44 16 42 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -31.39 362.43 -11.05 -42.44 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.68 Total: -0.49 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.44 Total: -22.63 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.00 Total: -37.44 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.36 Total: -4.54 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.39 -11.05 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.109 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds