Wall clock time and date at job start Mon Mar 30 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47380 * 270.00516 * 3 2 1 5 5 H 1.48505 * 109.47038 * 30.00444 * 3 2 1 6 6 H 1.48495 * 109.47087 * 150.00377 * 3 2 1 7 7 C 1.37879 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46806 * 180.02562 * 11 10 9 13 13 N 1.46892 * 109.46760 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99991 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47338 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.99044 * 59.63310 * 15 14 13 17 17 C 1.54101 * 109.87849 * 180.71580 * 15 14 13 18 18 C 1.54809 * 104.18657 * 121.45694 * 17 15 14 19 19 C 1.54990 * 102.09428 * 20.88047 * 18 17 15 20 20 H 1.09003 * 110.75627 * 81.54470 * 19 18 17 21 21 C 1.53006 * 110.62024 * 204.47780 * 19 18 17 22 22 C 1.52997 * 117.49685 * 244.14571 * 21 19 18 23 23 C 1.52998 * 60.00146 * 252.51041 * 22 21 19 24 24 O 1.43746 * 109.87904 * 298.54817 * 15 14 13 25 25 H 0.96995 * 120.00071 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46914 * 60.01119 * 9 7 2 27 27 H 1.08991 * 109.47391 * 300.00794 * 9 7 2 28 28 H 1.08997 * 109.47102 * 60.00157 * 10 9 7 29 29 H 1.09001 * 109.47172 * 300.00112 * 10 9 7 30 30 H 1.09004 * 109.47243 * 60.00341 * 11 10 9 31 31 H 1.09001 * 109.47027 * 299.99809 * 11 10 9 32 32 H 1.08997 * 109.47102 * 59.99765 * 12 11 10 33 33 H 1.09000 * 109.46742 * 300.00039 * 12 11 10 34 34 H 1.00904 * 111.00331 * 303.95388 * 13 12 11 35 35 H 1.09008 * 109.46603 * 60.00006 * 14 13 12 36 36 H 1.09000 * 109.47212 * 299.99990 * 14 13 12 37 37 H 1.09001 * 110.48854 * 240.12839 * 17 15 14 38 38 H 1.08998 * 110.48717 * 2.64843 * 17 15 14 39 39 H 1.09003 * 110.90779 * 262.67799 * 18 17 15 40 40 H 1.09000 * 110.90642 * 139.08198 * 18 17 15 41 41 H 1.09000 * 115.54599 * 29.85065 * 21 19 18 42 42 H 1.09005 * 117.50024 * 359.97438 * 22 21 19 43 43 H 1.09004 * 117.50203 * 145.01687 * 22 21 19 44 44 H 1.09003 * 117.49769 * 252.51646 * 23 22 21 45 45 H 1.08997 * 117.49995 * 107.48741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1501 -0.0005 13 7 1.7401 -7.4222 -0.0018 14 6 2.6646 -8.5639 -0.0018 15 6 1.8645 -9.8680 -0.0025 16 1 1.2286 -9.9146 -0.8865 17 6 2.8257 -11.0724 0.0156 18 6 2.4361 -11.8495 1.2966 19 6 0.9963 -11.3399 1.5603 20 1 0.2776 -11.8738 0.9385 21 6 0.6367 -11.4832 3.0406 22 6 -0.5003 -12.4412 3.4017 23 6 -0.7148 -10.9293 3.4961 24 8 1.0579 -9.9472 1.1847 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8719 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8533 -5.0451 0.8886 32 1 3.1006 -6.0924 0.8899 33 1 3.1019 -6.0922 -0.8901 34 1 1.1028 -7.4726 0.7789 35 1 3.2919 -8.5233 0.8887 36 1 3.2932 -8.5224 -0.8913 37 1 2.6759 -11.6933 -0.8677 38 1 3.8603 -10.7340 0.0720 39 1 3.0975 -11.5922 2.1239 40 1 2.4413 -12.9244 1.1161 41 1 1.4721 -11.4079 3.7367 42 1 -0.9924 -12.9690 2.5848 43 1 -0.4131 -12.9965 4.3357 44 1 -0.7687 -10.4897 4.4921 45 1 -1.3477 -10.4627 2.7412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722333261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:16 Heat of formation + Delta-G solvation = -69.981562 kcal Electronic energy + Delta-G solvation = -19760.919723 eV Core-core repulsion = 16777.014509 eV Total energy + Delta-G solvation = -2983.905213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76875 -38.14695 -37.38731 -35.83337 -34.10596 -33.06249 -31.40408 -29.42580 -26.79940 -25.27772 -23.33445 -23.18962 -22.74484 -21.96730 -21.54137 -21.41378 -18.44640 -17.66192 -17.37138 -16.71507 -16.54624 -16.43508 -15.75985 -15.46208 -15.41613 -14.73741 -14.50598 -14.39191 -13.86966 -13.66175 -13.48811 -12.98858 -12.95741 -12.82843 -12.59828 -12.43800 -12.40323 -12.24939 -12.14051 -12.11091 -11.99460 -11.58445 -11.38872 -11.31097 -11.21984 -11.01194 -10.93799 -10.57804 -10.55875 -9.38269 -8.20071 -6.31915 1.39117 1.41368 1.52480 2.40796 2.52882 3.12013 3.12402 3.26781 3.54749 3.66442 3.95246 3.99880 4.05627 4.11130 4.11858 4.19046 4.29405 4.33861 4.41887 4.53194 4.60211 4.63319 4.72926 4.74021 4.78326 4.83169 4.91042 4.92549 5.01111 5.05485 5.11326 5.20544 5.22613 5.24037 5.27216 5.28834 5.34400 5.54278 5.76962 5.86134 5.99486 6.13749 6.25174 6.42303 6.85626 7.37359 8.92063 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.002507 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.886589 B =11167.423807 C =11799.798711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.697 5.697 14 C 0.063 3.937 15 C 0.077 3.923 16 H 0.069 0.931 17 C -0.147 4.147 18 C -0.140 4.140 19 C 0.100 3.900 20 H 0.071 0.929 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.184 4.184 24 O -0.390 6.390 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.343 0.657 35 H 0.031 0.969 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -29.544 3.639 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.328 5.328 14 C -0.066 4.066 15 C 0.019 3.981 16 H 0.087 0.913 17 C -0.185 4.185 18 C -0.178 4.178 19 C 0.043 3.957 20 H 0.089 0.911 21 C -0.179 4.179 22 C -0.194 4.194 23 C -0.221 4.221 24 O -0.310 6.310 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.743 -29.272 3.060 29.811 hybrid contribution 0.305 1.161 0.807 1.447 sum 5.048 -28.110 3.867 28.821 Atomic orbital electron populations 1.70113 1.07919 1.27805 1.51755 1.26060 0.95830 1.03603 0.94720 0.85396 0.78613 0.78151 0.78577 1.19621 1.20657 1.18653 1.21744 0.93590 0.92462 1.50461 0.92099 1.19029 0.94528 0.93381 0.94560 1.21394 0.97958 0.93525 1.00512 1.21466 0.98073 0.93550 1.01277 1.21861 0.95253 0.88199 1.00496 1.60473 1.20131 1.01629 1.50556 1.22218 0.94018 0.89161 1.01181 1.22830 0.92076 0.94831 0.88389 0.91349 1.22974 1.00335 0.95818 0.99364 1.23114 0.95310 1.01544 0.97786 1.22773 0.97263 0.82095 0.93540 0.91069 1.22299 0.93395 1.06784 0.95396 1.23076 1.00157 0.92127 1.04003 1.22870 0.99267 0.97284 1.02683 1.88906 1.71547 1.26285 1.44250 0.92752 0.99262 0.99365 0.93169 0.92823 0.92628 0.93332 0.95252 0.90643 0.83872 0.95028 0.89044 0.88955 0.89525 0.90587 0.88274 0.87252 0.87952 0.87042 0.88533 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.24 4.97 29.85 0.15 1.38 16 10 C -0.10 -4.14 5.15 30.60 0.16 -3.99 16 11 C -0.11 -3.88 5.47 30.60 0.17 -3.71 16 12 C 0.07 2.10 5.69 86.31 0.49 2.59 16 13 N -0.70 -19.09 6.50 -513.88 -3.34 -22.43 16 14 C 0.06 1.36 5.20 86.30 0.45 1.81 16 15 C 0.08 1.47 3.69 30.97 0.11 1.58 16 16 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 17 C -0.15 -1.87 6.64 31.58 0.21 -1.66 16 18 C -0.14 -1.70 6.59 31.89 0.21 -1.49 16 19 C 0.10 1.65 3.51 31.28 0.11 1.76 16 20 H 0.07 1.11 7.96 -2.39 -0.02 1.09 16 21 C -0.16 -2.50 5.51 -10.79 -0.06 -2.56 16 22 C -0.16 -1.90 10.19 30.59 0.31 -1.59 16 23 C -0.18 -3.10 10.21 30.59 0.31 -2.78 16 24 O -0.39 -8.84 10.26 -148.98 -1.53 -10.37 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 27 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.34 9.93 8.19 -89.69 -0.73 9.20 16 35 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.99 7.70 -2.39 -0.02 0.97 16 39 H 0.08 0.95 7.92 -2.39 -0.02 0.93 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 1.63 7.96 -2.39 -0.02 1.61 16 42 H 0.10 1.08 8.07 -2.38 -0.02 1.06 16 43 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -67.81 362.43 0.95 -66.86 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.19 Total: 17.73 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 3.32 Total: -40.55 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.06 Total: -81.15 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -1.53 Total: -10.37 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.81 0.95 -66.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.122 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds