Wall clock time and date at job start Mon Mar 30 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00252 * 2 1 4 4 H 1.48503 * 109.46823 * 269.99729 * 3 2 1 5 5 H 1.48491 * 109.47024 * 29.99740 * 3 2 1 6 6 H 1.48501 * 109.46886 * 150.00059 * 3 2 1 7 7 C 1.37885 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99716 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47562 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47798 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47753 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00648 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47529 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.86852 * 306.00646 * 15 14 13 17 17 C 1.54100 * 109.87950 * 185.00239 * 15 14 13 18 18 C 1.54817 * 104.18606 * 238.39547 * 17 15 14 19 19 C 1.54998 * 102.12466 * 339.09929 * 18 17 15 20 20 H 1.08997 * 110.62197 * 278.54323 * 19 18 17 21 21 C 1.52998 * 110.61705 * 155.53959 * 19 18 17 22 22 C 1.53000 * 117.49904 * 248.62113 * 21 19 18 23 23 C 1.53005 * 60.00101 * 252.51346 * 22 21 19 24 24 O 1.43746 * 110.00491 * 67.09123 * 15 14 13 25 25 H 0.96996 * 119.99744 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47615 * 59.99631 * 9 7 2 27 27 H 1.09002 * 109.47176 * 299.99334 * 9 7 2 28 28 H 1.09006 * 109.47621 * 59.99952 * 10 9 7 29 29 H 1.09002 * 109.47240 * 299.99907 * 10 9 7 30 30 H 1.09003 * 109.47068 * 59.99523 * 11 10 9 31 31 H 1.09002 * 109.47119 * 300.00413 * 11 10 9 32 32 H 1.09003 * 109.46976 * 59.99742 * 12 11 10 33 33 H 1.09002 * 109.47346 * 300.00548 * 12 11 10 34 34 H 1.00905 * 110.99771 * 56.04519 * 13 12 11 35 35 H 1.09003 * 109.46946 * 59.99572 * 14 13 12 36 36 H 1.09004 * 109.47126 * 300.00648 * 14 13 12 37 37 H 1.08991 * 110.48958 * 119.72262 * 17 15 14 38 38 H 1.08995 * 110.60333 * 357.12007 * 17 15 14 39 39 H 1.09002 * 110.90844 * 97.31763 * 18 17 15 40 40 H 1.08997 * 110.90682 * 220.88854 * 18 17 15 41 41 H 1.08997 * 115.55064 * 34.33788 * 21 19 18 42 42 H 1.08992 * 117.50157 * 0.02562 * 22 21 19 43 43 H 1.09002 * 117.49643 * 145.02575 * 22 21 19 44 44 H 1.09002 * 117.49564 * 252.50940 * 23 22 21 45 45 H 1.08998 * 117.49892 * 107.49221 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6369 0.0009 12 6 6.0614 -4.0793 0.0015 13 7 7.5304 -4.0795 0.0008 14 6 8.0568 -5.4508 0.0007 15 6 9.5862 -5.4101 0.0006 16 1 9.9404 -4.7977 -0.8286 17 6 10.1484 -6.8393 -0.1259 18 6 11.0222 -7.0167 1.1397 19 6 11.3032 -5.5485 1.5497 20 1 12.1215 -5.1352 0.9601 21 6 11.6146 -5.4569 3.0449 22 6 10.5879 -4.7586 3.9388 23 6 11.9174 -4.0717 3.6198 24 8 10.0638 -4.8715 1.2448 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8910 27 1 3.8752 -0.6807 -0.8889 28 1 3.6584 -3.1504 -0.8893 29 1 3.6577 -3.1507 0.8907 30 1 5.9148 -2.1230 0.8909 31 1 5.9148 -2.1229 -0.8890 32 1 5.6980 -4.5935 -0.8883 33 1 5.6980 -4.5929 0.8916 34 1 7.8924 -3.5529 0.7818 35 1 7.7068 -5.9742 -0.8891 36 1 7.7076 -5.9742 0.8908 37 1 10.7568 -6.9317 -1.0255 38 1 9.3398 -7.5700 -0.1365 39 1 10.4725 -7.5405 1.9217 40 1 11.9493 -7.5384 0.9023 41 1 12.1544 -6.3053 3.4655 42 1 9.6905 -4.3648 3.4619 43 1 10.4519 -5.1476 4.9479 44 1 12.6559 -4.0089 4.4190 45 1 11.8946 -3.2257 2.9329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722333262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:19 Heat of formation + Delta-G solvation = -47.796086 kcal Electronic energy + Delta-G solvation = -19959.305426 eV Core-core repulsion = 16976.362247 eV Total energy + Delta-G solvation = -2982.943179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14904 -37.23077 -36.29160 -34.17765 -32.50631 -32.18734 -30.38916 -28.31457 -25.66016 -23.86585 -22.68783 -22.25846 -21.55612 -20.89674 -20.54121 -19.94092 -16.89346 -16.62332 -16.42538 -16.16443 -15.23275 -15.23134 -14.49643 -14.43756 -14.12388 -13.99426 -13.53221 -12.87064 -12.60117 -12.41198 -12.34746 -12.03413 -11.99594 -11.69753 -11.65630 -11.48481 -11.35260 -11.09508 -10.96471 -10.72262 -10.51396 -10.48670 -10.40009 -9.84030 -9.79389 -9.62407 -9.41808 -9.09805 -8.48068 -8.37436 -5.98957 -3.96266 3.35706 3.38696 3.42506 3.47760 3.56046 4.07467 4.18258 4.33990 4.50938 4.56673 4.68860 4.69279 4.80636 4.99002 5.01889 5.11203 5.19917 5.31352 5.34805 5.37044 5.42582 5.43732 5.50069 5.51081 5.64017 5.66234 5.76469 5.84475 5.87877 5.88884 6.03255 6.10411 6.18140 6.44199 6.70268 6.72857 6.82866 6.95790 7.14572 7.40189 7.46076 7.53500 7.86740 8.60690 9.06466 9.64250 11.14718 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.002781 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.446287 B =10067.648183 C =10690.607048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.690 5.690 14 C 0.062 3.938 15 C 0.079 3.921 16 H 0.077 0.923 17 C -0.152 4.152 18 C -0.147 4.147 19 C 0.106 3.894 20 H 0.072 0.928 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.176 4.176 24 O -0.366 6.366 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.346 0.654 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.942 -14.861 3.613 30.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.070 4.070 13 N -0.321 5.321 14 C -0.067 4.067 15 C 0.021 3.979 16 H 0.095 0.905 17 C -0.190 4.190 18 C -0.184 4.184 19 C 0.049 3.951 20 H 0.090 0.910 21 C -0.177 4.177 22 C -0.200 4.200 23 C -0.213 4.213 24 O -0.286 6.286 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.720 -14.513 3.052 30.560 hybrid contribution 0.227 0.415 0.759 0.894 sum 26.946 -14.098 3.811 30.649 Atomic orbital electron populations 1.69926 1.06317 1.26798 1.51542 1.25057 0.94744 0.99234 0.94652 0.86750 0.80368 0.83523 0.78498 1.20311 1.21481 1.18970 1.21201 0.89731 0.94385 1.50393 0.91148 1.19570 0.96903 0.92529 0.96159 1.21415 0.91857 0.99751 1.00886 1.21664 0.97424 0.94581 1.01931 1.22050 0.86257 0.98478 1.00184 1.60512 1.08306 1.12855 1.50468 1.22128 0.92489 0.91204 1.00915 1.22801 0.94325 0.93308 0.87468 0.90502 1.22960 1.00100 0.97303 0.98615 1.23111 1.00352 0.97175 0.97786 1.22543 0.87715 0.91020 0.93814 0.90982 1.22295 1.05377 0.96887 0.93153 1.22869 0.94362 1.03325 0.99467 1.22957 0.99632 0.95394 1.03337 1.88888 1.37867 1.62292 1.39545 0.92832 0.96754 0.97080 0.92874 0.93070 0.92743 0.91680 0.91263 0.95494 0.83598 0.90100 0.94767 0.90497 0.90270 0.90373 0.90321 0.86981 0.87548 0.89176 0.88964 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.96 55.43 0.77 -27.91 16 2 C 0.06 1.92 5.47 -17.81 -0.10 1.82 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.47 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.85 5.69 -3.83 -0.02 0.82 16 13 N -0.69 -8.96 6.50 -113.79 -0.74 -9.70 16 14 C 0.06 0.67 5.17 -3.83 -0.02 0.65 16 15 C 0.08 0.75 3.65 -26.16 -0.10 0.65 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.15 -1.07 6.64 -25.20 -0.17 -1.23 16 18 C -0.15 -0.98 6.58 -24.72 -0.16 -1.14 16 19 C 0.11 0.87 3.70 -25.68 -0.10 0.78 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.16 -1.23 5.73 -90.62 -0.52 -1.75 16 22 C -0.16 -1.43 9.90 -26.73 -0.26 -1.70 16 23 C -0.18 -1.40 10.25 -26.73 -0.27 -1.68 16 24 O -0.37 -3.86 8.98 -35.23 -0.32 -4.17 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 4.57 8.39 -39.29 -0.33 4.24 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.53 7.70 -51.93 -0.40 0.13 16 39 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.12 7.07 -51.93 -0.37 0.76 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -31.46 357.32 -10.65 -42.11 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.63 Total: -0.20 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.45 Total: -23.25 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.03 Total: -37.62 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.32 Total: -4.17 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.46 -10.65 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.690 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds