Wall clock time and date at job start Mon Mar 30 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00252 * 2 1 4 4 H 1.48503 * 109.46823 * 269.99729 * 3 2 1 5 5 H 1.48491 * 109.47024 * 29.99740 * 3 2 1 6 6 H 1.48501 * 109.46886 * 150.00059 * 3 2 1 7 7 C 1.37885 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99716 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47562 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47798 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47753 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00648 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47529 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.86852 * 306.00646 * 15 14 13 17 17 C 1.54100 * 109.87950 * 185.00239 * 15 14 13 18 18 C 1.54817 * 104.18606 * 238.39547 * 17 15 14 19 19 C 1.54998 * 102.12466 * 339.09929 * 18 17 15 20 20 H 1.08997 * 110.62197 * 278.54323 * 19 18 17 21 21 C 1.52998 * 110.61705 * 155.53959 * 19 18 17 22 22 C 1.53000 * 117.49904 * 248.62113 * 21 19 18 23 23 C 1.53005 * 60.00101 * 252.51346 * 22 21 19 24 24 O 1.43746 * 110.00491 * 67.09123 * 15 14 13 25 25 H 0.96996 * 119.99744 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47615 * 59.99631 * 9 7 2 27 27 H 1.09002 * 109.47176 * 299.99334 * 9 7 2 28 28 H 1.09006 * 109.47621 * 59.99952 * 10 9 7 29 29 H 1.09002 * 109.47240 * 299.99907 * 10 9 7 30 30 H 1.09003 * 109.47068 * 59.99523 * 11 10 9 31 31 H 1.09002 * 109.47119 * 300.00413 * 11 10 9 32 32 H 1.09003 * 109.46976 * 59.99742 * 12 11 10 33 33 H 1.09002 * 109.47346 * 300.00548 * 12 11 10 34 34 H 1.00905 * 110.99771 * 56.04519 * 13 12 11 35 35 H 1.09003 * 109.46946 * 59.99572 * 14 13 12 36 36 H 1.09004 * 109.47126 * 300.00648 * 14 13 12 37 37 H 1.08991 * 110.48958 * 119.72262 * 17 15 14 38 38 H 1.08995 * 110.60333 * 357.12007 * 17 15 14 39 39 H 1.09002 * 110.90844 * 97.31763 * 18 17 15 40 40 H 1.08997 * 110.90682 * 220.88854 * 18 17 15 41 41 H 1.08997 * 115.55064 * 34.33788 * 21 19 18 42 42 H 1.08992 * 117.50157 * 0.02562 * 22 21 19 43 43 H 1.09002 * 117.49643 * 145.02575 * 22 21 19 44 44 H 1.09002 * 117.49564 * 252.50940 * 23 22 21 45 45 H 1.08998 * 117.49892 * 107.49221 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6369 0.0009 12 6 6.0614 -4.0793 0.0015 13 7 7.5304 -4.0795 0.0008 14 6 8.0568 -5.4508 0.0007 15 6 9.5862 -5.4101 0.0006 16 1 9.9404 -4.7977 -0.8286 17 6 10.1484 -6.8393 -0.1259 18 6 11.0222 -7.0167 1.1397 19 6 11.3032 -5.5485 1.5497 20 1 12.1215 -5.1352 0.9601 21 6 11.6146 -5.4569 3.0449 22 6 10.5879 -4.7586 3.9388 23 6 11.9174 -4.0717 3.6198 24 8 10.0638 -4.8715 1.2448 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8910 27 1 3.8752 -0.6807 -0.8889 28 1 3.6584 -3.1504 -0.8893 29 1 3.6577 -3.1507 0.8907 30 1 5.9148 -2.1230 0.8909 31 1 5.9148 -2.1229 -0.8890 32 1 5.6980 -4.5935 -0.8883 33 1 5.6980 -4.5929 0.8916 34 1 7.8924 -3.5529 0.7818 35 1 7.7068 -5.9742 -0.8891 36 1 7.7076 -5.9742 0.8908 37 1 10.7568 -6.9317 -1.0255 38 1 9.3398 -7.5700 -0.1365 39 1 10.4725 -7.5405 1.9217 40 1 11.9493 -7.5384 0.9023 41 1 12.1544 -6.3053 3.4655 42 1 9.6905 -4.3648 3.4619 43 1 10.4519 -5.1476 4.9479 44 1 12.6559 -4.0089 4.4190 45 1 11.8946 -3.2257 2.9329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722333262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:19 Heat of formation + Delta-G solvation = -66.773758 kcal Electronic energy + Delta-G solvation = -19960.128359 eV Core-core repulsion = 16976.362247 eV Total energy + Delta-G solvation = -2983.766113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81173 -38.11995 -37.29370 -35.81586 -34.17862 -33.08617 -31.60993 -29.67998 -26.86310 -25.18670 -23.41068 -23.00488 -22.70618 -21.96645 -21.58158 -21.15413 -18.86886 -17.60539 -17.17858 -16.99792 -16.34505 -16.29265 -15.87157 -15.61229 -15.42035 -14.78338 -14.68790 -14.48507 -13.85538 -13.69797 -13.57494 -13.16157 -12.96576 -12.87031 -12.60069 -12.36542 -12.31603 -12.22780 -12.10306 -12.05552 -11.75859 -11.64438 -11.38635 -11.31772 -11.14177 -11.11416 -11.03617 -10.76731 -10.47623 -9.40377 -8.30270 -6.34312 1.35584 1.37409 1.50221 2.36258 2.74169 2.93394 3.04977 3.16420 3.55812 3.73880 3.99821 4.02719 4.05611 4.07129 4.13219 4.18419 4.33690 4.36597 4.46675 4.50946 4.58863 4.61641 4.70214 4.73667 4.77874 4.82196 4.89832 4.93945 5.02372 5.04742 5.11259 5.15796 5.18192 5.23591 5.24863 5.26792 5.34760 5.56371 5.64040 5.67886 5.99806 6.11191 6.28727 6.41768 6.73770 7.30472 8.86756 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.002781 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.446287 B =10067.648183 C =10690.607048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.106 4.106 12 C 0.068 3.932 13 N -0.694 5.694 14 C 0.063 3.937 15 C 0.079 3.921 16 H 0.070 0.930 17 C -0.147 4.147 18 C -0.140 4.140 19 C 0.098 3.902 20 H 0.076 0.924 21 C -0.152 4.152 22 C -0.176 4.176 23 C -0.176 4.176 24 O -0.388 6.388 25 H 0.266 0.734 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.344 0.656 35 H 0.090 0.910 36 H 0.030 0.970 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.715 -15.088 3.564 33.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.061 4.061 13 N -0.325 5.325 14 C -0.066 4.066 15 C 0.021 3.979 16 H 0.088 0.912 17 C -0.185 4.185 18 C -0.178 4.178 19 C 0.041 3.959 20 H 0.094 0.906 21 C -0.170 4.170 22 C -0.213 4.213 23 C -0.213 4.213 24 O -0.308 6.308 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 29.511 -14.763 3.001 33.134 hybrid contribution -0.701 0.425 0.779 1.130 sum 28.810 -14.338 3.780 32.402 Atomic orbital electron populations 1.70078 1.08321 1.28193 1.52794 1.26080 0.95684 1.03707 0.94086 0.85598 0.79410 0.77994 0.79291 1.19026 1.20816 1.17125 1.21567 0.92364 0.93086 1.50303 0.95143 1.19541 0.93675 0.95419 0.96360 1.21288 0.94536 0.96928 1.00503 1.21489 0.94436 0.96449 1.02067 1.21871 0.87288 0.96626 1.00358 1.60504 1.07232 1.14352 1.50386 1.22200 0.93494 0.89821 1.01075 1.22788 0.93342 0.94798 0.86988 0.91212 1.22956 1.00464 0.95608 0.99498 1.23100 1.01168 0.96146 0.97388 1.22729 0.87029 0.91949 0.94165 0.90636 1.22428 1.04493 0.97271 0.92835 1.22821 0.93945 1.04485 1.00088 1.22990 0.99387 0.95332 1.03589 1.88879 1.38925 1.63106 1.39908 0.92476 0.96424 0.96410 0.93250 0.93602 0.92434 0.91658 0.90929 0.95547 0.83851 0.89205 0.95206 0.89026 0.89762 0.90679 0.88245 0.85104 0.89809 0.88278 0.87435 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 45.81 27.47 68.60 1.88 47.69 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.54 -32.23 9.66 25.60 0.25 -31.98 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 11 C -0.11 -3.45 5.47 30.59 0.17 -3.28 16 12 C 0.07 1.86 5.69 86.30 0.49 2.35 16 13 N -0.69 -17.22 6.50 -513.92 -3.34 -20.56 16 14 C 0.06 1.27 5.17 86.30 0.45 1.72 16 15 C 0.08 1.38 3.65 30.96 0.11 1.50 16 16 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.15 -1.74 6.64 31.59 0.21 -1.53 16 18 C -0.14 -1.54 6.58 31.90 0.21 -1.33 16 19 C 0.10 1.45 3.70 31.28 0.12 1.57 16 20 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 21 C -0.15 -2.11 5.73 -10.79 -0.06 -2.17 16 22 C -0.18 -2.98 9.90 30.60 0.30 -2.68 16 23 C -0.18 -2.61 10.25 30.60 0.31 -2.30 16 24 O -0.39 -7.87 8.98 -148.98 -1.34 -9.21 16 25 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 26 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 27 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.34 8.82 8.39 -89.69 -0.75 8.06 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.92 7.70 -2.39 -0.02 0.91 16 39 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.80 7.07 -2.39 -0.02 1.79 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.20 357.32 0.92 -67.28 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.12 Total: 17.82 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 3.30 Total: -41.79 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -3.04 Total: -81.79 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.34 Total: -9.21 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -68.20 0.92 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.505 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds