Wall clock time and date at job start Mon Mar 30 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48506 * 109.47101 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46902 * 120.00039 * 3 2 1 7 7 C 1.37879 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47340 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47242 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99906 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47102 * 179.97438 * 14 13 12 16 16 H 1.09011 * 110.27092 * 57.90787 * 15 14 13 17 17 C 1.54944 * 110.30962 * 179.97438 * 15 14 13 18 18 C 1.55306 * 100.93805 * 155.45964 * 17 15 14 19 19 C 1.54379 * 102.25564 * 325.87129 * 18 17 15 20 20 H 1.09005 * 109.82805 * 261.74960 * 19 18 17 21 21 C 1.52996 * 109.83086 * 140.87179 * 19 18 17 22 22 C 1.53000 * 117.49997 * 180.02562 * 21 19 18 23 23 C 1.53002 * 60.02940 * 252.49592 * 22 21 19 24 24 O 1.43240 * 107.59051 * 21.35489 * 19 18 17 25 25 H 0.96992 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.00322 * 9 7 2 27 27 H 1.08995 * 109.47252 * 300.00507 * 9 7 2 28 28 H 1.08998 * 109.46619 * 60.00100 * 10 9 7 29 29 H 1.09004 * 109.47112 * 300.00415 * 10 9 7 30 30 H 1.08998 * 109.47266 * 60.00395 * 11 10 9 31 31 H 1.09004 * 109.47274 * 300.00214 * 11 10 9 32 32 H 1.09008 * 109.47040 * 60.00337 * 12 11 10 33 33 H 1.08995 * 109.47362 * 300.00276 * 12 11 10 34 34 H 1.00899 * 111.00180 * 56.04960 * 13 12 11 35 35 H 1.09005 * 109.47110 * 59.99649 * 14 13 12 36 36 H 1.08999 * 109.46691 * 300.00017 * 14 13 12 37 37 H 1.09002 * 111.12239 * 37.54601 * 17 15 14 38 38 H 1.08991 * 111.16569 * 273.39666 * 17 15 14 39 39 H 1.09006 * 110.84635 * 207.67598 * 18 17 15 40 40 H 1.09003 * 110.84552 * 84.06635 * 18 17 15 41 41 H 1.09007 * 115.55004 * 325.66779 * 21 19 18 42 42 H 1.09002 * 117.49833 * 359.97438 * 22 21 19 43 43 H 1.09002 * 117.49953 * 144.99738 * 22 21 19 44 44 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 45 45 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0018 14 6 2.6648 -8.5638 -0.0006 15 6 1.8648 -9.8680 -0.0013 16 1 1.2052 -9.9060 -0.8683 17 6 2.8222 -11.0862 -0.0007 18 6 1.9132 -12.1751 0.6319 19 6 1.0701 -11.3569 1.6333 20 1 1.4940 -11.4467 2.6336 21 6 -0.3730 -11.8652 1.6339 22 6 -1.3657 -11.1723 2.5694 23 6 -0.8693 -12.5833 2.8913 24 8 1.1032 -9.9887 1.2107 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 0.8542 -5.0446 -0.8914 31 1 0.8535 -5.0451 0.8886 32 1 3.1007 -6.0923 0.8900 33 1 3.1021 -6.0922 -0.8900 34 1 1.1047 -7.4721 -0.7838 35 1 3.2915 -8.5229 0.8903 36 1 3.2940 -8.5226 -0.8897 37 1 3.6983 -10.8970 0.6196 38 1 3.1134 -11.3583 -1.0151 39 1 2.5102 -12.9259 1.1498 40 1 1.2778 -12.6369 -0.1238 41 1 -0.7483 -12.2156 0.6723 42 1 -0.9907 -10.3545 3.1848 43 1 -2.3941 -11.0673 2.2235 44 1 -0.1678 -12.6936 3.7182 45 1 -1.5709 -13.4065 2.7568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722333263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:22 Heat of formation + Delta-G solvation = -49.631128 kcal Electronic energy + Delta-G solvation = -19722.021096 eV Core-core repulsion = 16738.998343 eV Total energy + Delta-G solvation = -2983.022752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02694 -37.21238 -36.27178 -34.09933 -32.42094 -32.14495 -30.20417 -27.93576 -25.45072 -23.78280 -22.64151 -22.11901 -21.80111 -21.17457 -20.34143 -19.86282 -17.03952 -16.68120 -16.19625 -15.84858 -15.01409 -14.89137 -14.63939 -14.44654 -14.05723 -13.81655 -13.39909 -12.95563 -12.54133 -12.25983 -12.21946 -11.94758 -11.75392 -11.72738 -11.61279 -11.41718 -11.16567 -11.04085 -10.93464 -10.54363 -10.47310 -10.43732 -10.36349 -10.26910 -9.61325 -9.56261 -9.19690 -8.95572 -8.28554 -8.24647 -5.93191 -3.95381 3.28604 3.37126 3.41116 3.43789 3.86146 4.16381 4.20206 4.23049 4.51130 4.59584 4.71013 4.80396 4.87158 4.97210 5.05287 5.14745 5.18529 5.36595 5.39530 5.41151 5.41933 5.44498 5.54270 5.57237 5.65249 5.73888 5.76959 5.88990 5.93491 5.98500 6.02238 6.23019 6.32473 6.58756 6.90243 6.95400 7.04476 7.13824 7.30852 7.51696 7.76145 7.93063 8.08407 8.51037 9.12050 9.68051 11.18184 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.002468 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.776771 B =11341.085137 C =12002.197448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.683 5.683 14 C 0.061 3.939 15 C 0.084 3.916 16 H 0.067 0.933 17 C -0.153 4.153 18 C -0.146 4.146 19 C 0.106 3.894 20 H 0.077 0.923 21 C -0.168 4.168 22 C -0.163 4.163 23 C -0.179 4.179 24 O -0.347 6.347 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -28.495 1.027 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.069 4.069 15 C 0.026 3.974 16 H 0.084 0.916 17 C -0.191 4.191 18 C -0.184 4.184 19 C 0.048 3.952 20 H 0.095 0.905 21 C -0.186 4.186 22 C -0.200 4.200 23 C -0.216 4.216 24 O -0.266 6.266 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.602 -28.203 1.823 28.381 hybrid contribution 0.824 0.760 -1.092 1.565 sum 3.426 -27.443 0.730 27.666 Atomic orbital electron populations 1.69960 1.06037 1.26599 1.50999 1.25040 0.94850 0.99208 0.95475 0.86669 0.79577 0.83238 0.78561 1.20314 1.21316 1.20262 1.21262 0.92966 0.91253 1.50355 0.92844 1.19090 0.94042 0.91315 0.97166 1.21587 0.99067 0.94024 1.00000 1.21627 0.97877 0.93767 1.02030 1.22075 0.96190 0.88661 0.99920 1.60402 1.19604 1.01334 1.49984 1.22096 0.94258 0.89599 1.00929 1.22969 0.91758 0.94112 0.88528 0.91550 1.23307 0.98864 0.94804 1.02143 1.23136 0.98149 0.98288 0.98824 1.22247 0.92469 0.82418 0.98017 0.90478 1.22688 0.95634 1.04995 0.95309 1.22833 0.98903 0.95406 1.02863 1.22974 1.03871 0.96181 0.98570 1.88648 1.73247 1.23908 1.40799 0.93009 0.96748 0.96579 0.93468 0.93758 0.92805 0.91587 0.91348 0.95806 0.84419 0.90499 0.94338 0.90162 0.89981 0.90119 0.90433 0.87928 0.88206 0.88851 0.88821 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16 11 C -0.12 -2.08 5.47 -26.74 -0.15 -2.23 16 12 C 0.06 0.91 5.69 -3.82 -0.02 0.88 16 13 N -0.68 -9.34 6.46 -113.77 -0.73 -10.07 16 14 C 0.06 0.68 5.41 -3.82 -0.02 0.66 16 15 C 0.08 0.84 3.63 -25.70 -0.09 0.75 16 16 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 17 C -0.15 -1.11 6.57 -24.48 -0.16 -1.27 16 18 C -0.15 -1.01 6.54 -24.79 -0.16 -1.17 16 19 C 0.11 0.98 3.71 -26.01 -0.10 0.88 16 20 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 21 C -0.17 -1.46 5.38 -90.59 -0.49 -1.95 16 22 C -0.16 -1.51 10.19 -26.73 -0.27 -1.78 16 23 C -0.18 -1.33 10.18 -26.69 -0.27 -1.61 16 24 O -0.35 -4.24 10.61 -35.23 -0.37 -4.61 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.34 4.35 8.73 -39.29 -0.34 4.00 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.49 7.65 -51.93 -0.40 0.09 16 41 H 0.10 0.84 7.84 -51.93 -0.41 0.44 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -31.84 363.28 -11.04 -42.88 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.70 Total: -0.89 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.42 Total: -22.92 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.00 Total: -37.10 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.37 Total: -4.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.84 -11.04 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.754 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds