Wall clock time and date at job start Mon Mar 30 2020 07:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48506 * 109.47101 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46902 * 120.00039 * 3 2 1 7 7 C 1.37879 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47340 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47242 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99906 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47102 * 179.97438 * 14 13 12 16 16 H 1.09011 * 110.27092 * 57.90787 * 15 14 13 17 17 C 1.54944 * 110.30962 * 179.97438 * 15 14 13 18 18 C 1.55306 * 100.93805 * 155.45964 * 17 15 14 19 19 C 1.54379 * 102.25564 * 325.87129 * 18 17 15 20 20 H 1.09005 * 109.82805 * 261.74960 * 19 18 17 21 21 C 1.52996 * 109.83086 * 140.87179 * 19 18 17 22 22 C 1.53000 * 117.49997 * 180.02562 * 21 19 18 23 23 C 1.53002 * 60.02940 * 252.49592 * 22 21 19 24 24 O 1.43240 * 107.59051 * 21.35489 * 19 18 17 25 25 H 0.96992 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.00322 * 9 7 2 27 27 H 1.08995 * 109.47252 * 300.00507 * 9 7 2 28 28 H 1.08998 * 109.46619 * 60.00100 * 10 9 7 29 29 H 1.09004 * 109.47112 * 300.00415 * 10 9 7 30 30 H 1.08998 * 109.47266 * 60.00395 * 11 10 9 31 31 H 1.09004 * 109.47274 * 300.00214 * 11 10 9 32 32 H 1.09008 * 109.47040 * 60.00337 * 12 11 10 33 33 H 1.08995 * 109.47362 * 300.00276 * 12 11 10 34 34 H 1.00899 * 111.00180 * 56.04960 * 13 12 11 35 35 H 1.09005 * 109.47110 * 59.99649 * 14 13 12 36 36 H 1.08999 * 109.46691 * 300.00017 * 14 13 12 37 37 H 1.09002 * 111.12239 * 37.54601 * 17 15 14 38 38 H 1.08991 * 111.16569 * 273.39666 * 17 15 14 39 39 H 1.09006 * 110.84635 * 207.67598 * 18 17 15 40 40 H 1.09003 * 110.84552 * 84.06635 * 18 17 15 41 41 H 1.09007 * 115.55004 * 325.66779 * 21 19 18 42 42 H 1.09002 * 117.49833 * 359.97438 * 22 21 19 43 43 H 1.09002 * 117.49953 * 144.99738 * 22 21 19 44 44 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 45 45 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0018 14 6 2.6648 -8.5638 -0.0006 15 6 1.8648 -9.8680 -0.0013 16 1 1.2052 -9.9060 -0.8683 17 6 2.8222 -11.0862 -0.0007 18 6 1.9132 -12.1751 0.6319 19 6 1.0701 -11.3569 1.6333 20 1 1.4940 -11.4467 2.6336 21 6 -0.3730 -11.8652 1.6339 22 6 -1.3657 -11.1723 2.5694 23 6 -0.8693 -12.5833 2.8913 24 8 1.1032 -9.9887 1.2107 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 0.8542 -5.0446 -0.8914 31 1 0.8535 -5.0451 0.8886 32 1 3.1007 -6.0923 0.8900 33 1 3.1021 -6.0922 -0.8900 34 1 1.1047 -7.4721 -0.7838 35 1 3.2915 -8.5229 0.8903 36 1 3.2940 -8.5226 -0.8897 37 1 3.6983 -10.8970 0.6196 38 1 3.1134 -11.3583 -1.0151 39 1 2.5102 -12.9259 1.1498 40 1 1.2778 -12.6369 -0.1238 41 1 -0.7483 -12.2156 0.6723 42 1 -0.9907 -10.3545 3.1848 43 1 -2.3941 -11.0673 2.2235 44 1 -0.1678 -12.6936 3.7182 45 1 -1.5709 -13.4065 2.7568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722333263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:21 Heat of formation + Delta-G solvation = -68.649879 kcal Electronic energy + Delta-G solvation = -19722.845811 eV Core-core repulsion = 16738.998343 eV Total energy + Delta-G solvation = -2983.847467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74120 -38.12698 -37.33819 -35.84839 -34.11236 -33.00794 -31.41284 -29.42350 -26.79954 -25.23298 -23.29999 -23.02792 -22.81253 -22.26688 -21.69775 -20.96438 -18.43822 -17.78322 -17.39333 -16.90980 -16.53296 -16.12800 -15.63926 -15.55866 -15.24326 -14.84918 -14.48042 -14.15469 -13.80486 -13.61671 -13.59435 -13.16698 -12.86400 -12.81058 -12.56083 -12.41573 -12.39545 -12.32297 -12.14933 -12.08031 -11.91032 -11.72513 -11.38067 -11.31423 -11.18823 -10.96799 -10.90977 -10.55181 -10.38700 -9.29482 -8.19693 -6.31673 1.39171 1.43160 1.51110 2.41024 2.60293 3.09647 3.12627 3.30803 3.59413 3.60727 3.88815 4.02750 4.12646 4.13339 4.16225 4.22003 4.32721 4.39455 4.41278 4.53330 4.58666 4.65288 4.71401 4.75163 4.79323 4.84158 4.90838 4.92356 5.01191 5.06617 5.10238 5.23979 5.25306 5.25977 5.27955 5.34420 5.35217 5.54576 5.77425 5.86405 6.07190 6.25423 6.28535 6.50385 6.85740 7.37555 8.92195 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.002468 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.776771 B =11341.085137 C =12002.197448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.073 3.927 13 N -0.697 5.697 14 C 0.062 3.938 15 C 0.080 3.920 16 H 0.067 0.933 17 C -0.146 4.146 18 C -0.139 4.139 19 C 0.099 3.901 20 H 0.073 0.927 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.160 4.160 24 O -0.381 6.381 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.013 1.013 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.342 0.658 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -29.737 0.465 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.056 4.056 13 N -0.328 5.328 14 C -0.067 4.067 15 C 0.022 3.978 16 H 0.085 0.915 17 C -0.184 4.184 18 C -0.176 4.176 19 C 0.041 3.959 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.222 4.222 23 C -0.197 4.197 24 O -0.300 6.300 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.005 0.995 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.340 -29.471 1.260 29.816 hybrid contribution 0.223 1.132 -0.894 1.460 sum 4.563 -28.339 0.365 28.706 Atomic orbital electron populations 1.70106 1.07920 1.27873 1.51683 1.26062 0.95828 1.03601 0.94707 0.85456 0.78235 0.77817 0.79264 1.18986 1.20769 1.19105 1.21720 0.93594 0.92475 1.50578 0.92085 1.19025 0.94529 0.93387 0.94535 1.21392 0.97955 0.93567 1.00492 1.21457 0.98078 0.93538 1.01264 1.21833 0.95175 0.88149 1.00448 1.60344 1.20409 1.01523 1.50533 1.22150 0.94072 0.89101 1.01360 1.23053 0.92206 0.94612 0.87890 0.91519 1.23290 0.98269 0.93404 1.03393 1.23126 0.97921 0.98151 0.98437 1.22393 0.93177 0.81763 0.98532 0.90889 1.22753 0.95248 1.05068 0.95932 1.22817 0.99247 0.96241 1.03864 1.23047 1.03520 0.95241 0.97928 1.88614 1.73827 1.25862 1.41727 0.92749 0.99206 0.99475 0.93162 0.92866 0.92822 0.93172 0.91483 0.94537 0.83994 0.91211 0.92518 0.89918 0.88078 0.88430 0.89619 0.87387 0.90127 0.88681 0.88208 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 11 C -0.11 -3.83 5.47 30.59 0.17 -3.66 16 12 C 0.07 2.12 5.69 86.30 0.49 2.61 16 13 N -0.70 -18.57 6.46 -513.87 -3.32 -21.89 16 14 C 0.06 1.30 5.41 86.30 0.47 1.76 16 15 C 0.08 1.50 3.63 31.26 0.11 1.61 16 16 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 17 C -0.15 -1.77 6.57 32.05 0.21 -1.56 16 18 C -0.14 -1.60 6.54 31.85 0.21 -1.39 16 19 C 0.10 1.73 3.71 31.06 0.12 1.84 16 20 H 0.07 1.29 7.93 -2.38 -0.02 1.27 16 21 C -0.17 -2.85 5.38 -10.77 -0.06 -2.90 16 22 C -0.18 -3.46 10.19 30.60 0.31 -3.15 16 23 C -0.16 -2.19 10.18 30.62 0.31 -1.88 16 24 O -0.38 -9.21 10.61 -148.98 -1.58 -10.79 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.34 8.58 8.73 -89.69 -0.78 7.80 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.09 0.86 7.65 -2.39 -0.02 0.84 16 41 H 0.11 1.64 7.84 -2.38 -0.02 1.63 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 45 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.25 363.28 0.89 -68.36 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.14 Total: 16.85 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.34 Total: -41.22 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.03 Total: -80.61 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.58 Total: -10.79 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.25 0.89 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722333263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.294 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds