Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00320 * 2 1 4 4 H 1.48505 * 109.47514 * 240.00310 * 3 2 1 5 5 H 1.48507 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47144 * 120.00225 * 3 2 1 7 7 C 1.37879 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47088 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00070 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.43495 * 35.09357 * 13 12 11 15 15 C 1.52950 * 109.39172 * 275.21213 * 13 12 11 16 16 C 1.53092 * 109.70528 * 180.53625 * 15 13 12 17 17 C 1.52879 * 109.20744 * 59.75561 * 16 15 13 18 18 H 1.09004 * 109.48267 * 59.22140 * 17 16 15 19 19 C 1.52943 * 110.16872 * 179.66665 * 17 16 15 20 20 O 1.43005 * 109.19479 * 177.84786 * 19 17 16 21 21 C 1.42848 * 114.37083 * 299.25763 * 20 19 17 22 22 C 1.53180 * 109.70675 * 60.47783 * 21 20 19 23 23 C 1.53021 * 108.91849 * 302.74396 * 22 21 20 24 24 H 1.08994 * 109.50515 * 297.71161 * 23 22 21 25 25 C 1.52879 * 110.12800 * 177.13300 * 23 22 21 26 26 H 0.97010 * 119.99668 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47290 * 60.00406 * 9 7 2 28 28 H 1.09002 * 109.47191 * 300.00318 * 9 7 2 29 29 H 1.09006 * 109.47387 * 60.00542 * 10 9 7 30 30 H 1.08993 * 109.47381 * 300.00169 * 10 9 7 31 31 H 1.09002 * 109.47228 * 60.00137 * 11 10 9 32 32 H 1.09000 * 109.47681 * 299.99879 * 11 10 9 33 33 H 1.00900 * 111.00106 * 56.04469 * 12 11 10 34 34 H 1.08998 * 109.43213 * 300.60822 * 15 13 12 35 35 H 1.08995 * 109.42909 * 60.51404 * 15 13 12 36 36 H 1.09003 * 109.51350 * 299.83981 * 16 15 13 37 37 H 1.08999 * 109.51243 * 179.67842 * 16 15 13 38 38 H 1.09002 * 109.52720 * 297.78353 * 19 17 16 39 39 H 1.08998 * 109.52584 * 57.92050 * 19 17 16 40 40 H 1.08996 * 109.38748 * 300.41912 * 21 20 19 41 41 H 1.09004 * 109.40440 * 180.54825 * 21 20 19 42 42 H 1.09009 * 109.55800 * 182.91323 * 22 21 20 43 43 H 1.09002 * 109.56437 * 62.58314 * 22 21 20 44 44 H 1.09007 * 109.51976 * 299.74942 * 25 23 22 45 45 H 1.09003 * 109.51900 * 59.86399 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4345 -6.1038 0.0007 13 6 1.7342 -7.3950 0.0007 14 1 0.8222 -7.3130 -0.5906 15 6 1.3763 -7.7786 1.4375 16 6 0.6576 -9.1303 1.4471 17 6 1.5765 -10.1929 0.8440 18 1 2.4963 -10.2508 1.4261 19 6 0.8823 -11.5556 0.8504 20 8 1.7390 -12.5226 0.2372 21 6 2.0677 -12.2400 -1.1239 22 6 2.7978 -10.8962 -1.2106 23 6 1.9100 -9.8090 -0.6012 24 1 0.9885 -9.7262 -1.1775 25 6 2.6417 -8.4667 -0.6088 26 1 -0.4850 0.8402 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8904 31 1 0.8530 -5.0451 -0.8897 32 1 0.8536 -5.0446 0.8903 33 1 3.0694 -6.0364 0.7821 34 1 2.2873 -7.8481 2.0319 35 1 0.7223 -7.0179 1.8636 36 1 -0.2559 -9.0612 0.8563 37 1 0.4091 -9.4033 2.4727 38 1 0.6735 -11.8534 1.8780 39 1 -0.0521 -11.4911 0.2928 40 1 1.1531 -12.1948 -1.7151 41 1 2.7121 -13.0287 -1.5121 42 1 3.0016 -10.6583 -2.2547 43 1 3.7356 -10.9539 -0.6580 44 1 3.5560 -8.5470 -0.0208 45 1 2.8910 -8.1936 -1.6342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723609859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = -90.224309 kcal Electronic energy + Delta-G solvation = -20556.516750 eV Core-core repulsion = 17571.733745 eV Total energy + Delta-G solvation = -2984.783005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41533 -37.87802 -35.46978 -33.47846 -33.03624 -31.62289 -29.59203 -29.20800 -26.09625 -24.29676 -23.74423 -22.29124 -22.03275 -20.60256 -20.26208 -19.74524 -16.43132 -16.31111 -16.11464 -15.64646 -15.20670 -14.99281 -14.57857 -14.49243 -14.23586 -13.98529 -13.51964 -13.17719 -12.66476 -12.39062 -12.23180 -12.03258 -11.84756 -11.73256 -11.53258 -11.37454 -11.13835 -11.12729 -10.82093 -10.70258 -10.55977 -10.54823 -10.35456 -10.21065 -9.68475 -9.63949 -9.28106 -9.03592 -8.32613 -8.09329 -5.97994 -4.00056 3.34794 3.38746 3.41639 3.58813 4.17104 4.36191 4.45753 4.48535 4.58202 4.76846 4.85740 4.86915 5.06409 5.11508 5.20212 5.27240 5.32028 5.37684 5.38909 5.42459 5.44932 5.56514 5.63266 5.73299 5.78890 5.82022 5.86037 5.93911 5.99550 6.02437 6.06417 6.28304 6.30668 6.35306 6.74716 6.80881 6.91730 7.15862 7.39272 7.66837 7.70443 7.85746 8.02548 8.45968 9.07005 9.63758 11.13469 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.054121 B = 0.002736 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.232927 B =10232.323833 C =10478.660018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.687 5.687 13 C 0.087 3.913 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.107 4.107 17 C -0.118 4.118 18 H 0.078 0.922 19 C 0.066 3.934 20 O -0.386 6.386 21 C 0.060 3.940 22 C -0.150 4.150 23 C -0.085 4.085 24 H 0.070 0.930 25 C -0.098 4.098 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.337 0.663 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -24.636 0.381 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.023 4.023 14 H 0.092 0.908 15 C -0.188 4.188 16 C -0.146 4.146 17 C -0.136 4.136 18 H 0.097 0.903 19 C -0.011 4.011 20 O -0.304 6.304 21 C -0.016 4.016 22 C -0.188 4.188 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.341 -24.643 -0.221 24.755 hybrid contribution -0.045 1.264 0.822 1.508 sum 2.296 -23.378 0.601 23.499 Atomic orbital electron populations 1.69962 1.06067 1.26651 1.50987 1.25032 0.94856 0.99260 0.95389 0.86652 0.79571 0.83110 0.78628 1.20209 1.21311 1.20273 1.21230 0.93024 0.91096 1.50415 0.92733 1.19055 0.94010 0.91387 0.97050 1.21623 0.99171 0.93067 1.00654 1.22145 0.94166 0.90836 0.99744 1.60649 1.20091 1.01216 1.49694 1.21571 0.96681 0.89595 0.94455 0.90801 1.22279 1.00801 0.97053 0.98620 1.21422 0.98199 0.94270 1.00684 1.21818 0.99983 0.94856 0.96976 0.90340 1.22628 0.92177 0.87994 0.98307 1.87904 1.68604 1.47849 1.26092 1.22585 0.98818 0.97029 0.83197 1.22231 0.99659 0.95019 1.01869 1.21195 0.98950 0.94837 0.95403 0.91138 1.21503 0.98110 0.92248 1.01702 0.92993 0.96625 0.96873 0.93729 0.92607 0.91638 0.95806 0.84535 0.91869 0.91724 0.91804 0.91846 0.89017 0.93220 0.93342 0.89051 0.90690 0.90998 0.92014 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 11 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 12 N -0.69 -9.97 6.24 -106.70 -0.67 -10.64 16 13 C 0.09 1.04 2.47 -67.69 -0.17 0.87 16 14 H 0.07 0.95 7.80 -51.93 -0.40 0.54 16 15 C -0.15 -1.58 5.16 -26.71 -0.14 -1.72 16 16 C -0.11 -0.95 5.26 -26.75 -0.14 -1.09 16 17 C -0.12 -1.02 2.12 -90.60 -0.19 -1.21 16 18 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 19 C 0.07 0.55 6.18 37.13 0.23 0.78 16 20 O -0.39 -3.85 10.76 -35.23 -0.38 -4.23 16 21 C 0.06 0.48 6.84 37.25 0.25 0.73 16 22 C -0.15 -1.20 5.47 -26.63 -0.15 -1.34 16 23 C -0.08 -0.75 2.01 -90.56 -0.18 -0.94 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.10 -1.01 4.86 -26.75 -0.13 -1.14 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.17 8.05 -51.93 -0.42 0.76 16 32 H 0.02 0.41 7.42 -51.93 -0.39 0.03 16 33 H 0.34 4.65 8.47 -39.29 -0.33 4.32 16 34 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.06 0.76 7.44 -51.93 -0.39 0.38 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -30.40 345.59 -10.10 -40.50 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.65 Total: -1.38 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -1.33 Total: -19.78 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.07 Total: -37.24 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.38 Total: -4.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.40 -10.10 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.723 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds