Wall clock time and date at job start Mon Mar 30 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00320 * 2 1 4 4 H 1.48505 * 109.47514 * 240.00310 * 3 2 1 5 5 H 1.48507 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47144 * 120.00225 * 3 2 1 7 7 C 1.37879 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47088 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00070 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.43495 * 35.09357 * 13 12 11 15 15 C 1.52950 * 109.39172 * 275.21213 * 13 12 11 16 16 C 1.53092 * 109.70528 * 180.53625 * 15 13 12 17 17 C 1.52879 * 109.20744 * 59.75561 * 16 15 13 18 18 H 1.09004 * 109.48267 * 59.22140 * 17 16 15 19 19 C 1.52943 * 110.16872 * 179.66665 * 17 16 15 20 20 O 1.43005 * 109.19479 * 177.84786 * 19 17 16 21 21 C 1.42848 * 114.37083 * 299.25763 * 20 19 17 22 22 C 1.53180 * 109.70675 * 60.47783 * 21 20 19 23 23 C 1.53021 * 108.91849 * 302.74396 * 22 21 20 24 24 H 1.08994 * 109.50515 * 297.71161 * 23 22 21 25 25 C 1.52879 * 110.12800 * 177.13300 * 23 22 21 26 26 H 0.97010 * 119.99668 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47290 * 60.00406 * 9 7 2 28 28 H 1.09002 * 109.47191 * 300.00318 * 9 7 2 29 29 H 1.09006 * 109.47387 * 60.00542 * 10 9 7 30 30 H 1.08993 * 109.47381 * 300.00169 * 10 9 7 31 31 H 1.09002 * 109.47228 * 60.00137 * 11 10 9 32 32 H 1.09000 * 109.47681 * 299.99879 * 11 10 9 33 33 H 1.00900 * 111.00106 * 56.04469 * 12 11 10 34 34 H 1.08998 * 109.43213 * 300.60822 * 15 13 12 35 35 H 1.08995 * 109.42909 * 60.51404 * 15 13 12 36 36 H 1.09003 * 109.51350 * 299.83981 * 16 15 13 37 37 H 1.08999 * 109.51243 * 179.67842 * 16 15 13 38 38 H 1.09002 * 109.52720 * 297.78353 * 19 17 16 39 39 H 1.08998 * 109.52584 * 57.92050 * 19 17 16 40 40 H 1.08996 * 109.38748 * 300.41912 * 21 20 19 41 41 H 1.09004 * 109.40440 * 180.54825 * 21 20 19 42 42 H 1.09009 * 109.55800 * 182.91323 * 22 21 20 43 43 H 1.09002 * 109.56437 * 62.58314 * 22 21 20 44 44 H 1.09007 * 109.51976 * 299.74942 * 25 23 22 45 45 H 1.09003 * 109.51900 * 59.86399 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4345 -6.1038 0.0007 13 6 1.7342 -7.3950 0.0007 14 1 0.8222 -7.3130 -0.5906 15 6 1.3763 -7.7786 1.4375 16 6 0.6576 -9.1303 1.4471 17 6 1.5765 -10.1929 0.8440 18 1 2.4963 -10.2508 1.4261 19 6 0.8823 -11.5556 0.8504 20 8 1.7390 -12.5226 0.2372 21 6 2.0677 -12.2400 -1.1239 22 6 2.7978 -10.8962 -1.2106 23 6 1.9100 -9.8090 -0.6012 24 1 0.9885 -9.7262 -1.1775 25 6 2.6417 -8.4667 -0.6088 26 1 -0.4850 0.8402 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8904 31 1 0.8530 -5.0451 -0.8897 32 1 0.8536 -5.0446 0.8903 33 1 3.0694 -6.0364 0.7821 34 1 2.2873 -7.8481 2.0319 35 1 0.7223 -7.0179 1.8636 36 1 -0.2559 -9.0612 0.8563 37 1 0.4091 -9.4033 2.4727 38 1 0.6735 -11.8534 1.8780 39 1 -0.0521 -11.4911 0.2928 40 1 1.1531 -12.1948 -1.7151 41 1 2.7121 -13.0287 -1.5121 42 1 3.0016 -10.6583 -2.2547 43 1 3.7356 -10.9539 -0.6580 44 1 3.5560 -8.5470 -0.0208 45 1 2.8910 -8.1936 -1.6342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723609859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:48 Heat of formation + Delta-G solvation = -108.509277 kcal Electronic energy + Delta-G solvation = -20557.309645 eV Core-core repulsion = 17571.733745 eV Total energy + Delta-G solvation = -2985.575900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16265 -38.81101 -36.78415 -35.25410 -33.78536 -33.26891 -30.73017 -30.13397 -27.80288 -25.33653 -24.61768 -23.80691 -22.81878 -22.08162 -21.08684 -20.87050 -18.49009 -17.11845 -16.84443 -16.67572 -16.57526 -16.09247 -15.95820 -15.70193 -15.21300 -14.75394 -14.72339 -14.40505 -13.98036 -13.84270 -13.50252 -13.22024 -13.00992 -12.78605 -12.57810 -12.52660 -12.49237 -12.39675 -12.24952 -11.97092 -11.86418 -11.60178 -11.49925 -11.40162 -11.19675 -11.00007 -10.95358 -10.55897 -10.29674 -9.28620 -8.21023 -6.32329 1.39370 1.42775 1.50743 2.40439 2.97304 3.11910 3.14812 3.62709 3.70399 3.82883 3.99947 4.00365 4.18257 4.21785 4.34385 4.38864 4.42268 4.47035 4.52666 4.55567 4.60714 4.69762 4.73062 4.81189 4.86102 4.90306 4.96750 5.01443 5.06290 5.10343 5.15885 5.19491 5.22792 5.25131 5.26448 5.43576 5.51007 5.54674 5.74009 5.84701 6.11052 6.26934 6.29068 6.50951 6.84465 7.36939 8.90796 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.054121 B = 0.002736 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.232927 B =10232.323833 C =10478.660018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.688 5.688 13 C 0.087 3.913 14 H 0.065 0.935 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.111 4.111 18 H 0.072 0.928 19 C 0.065 3.935 20 O -0.404 6.404 21 C 0.057 3.943 22 C -0.146 4.146 23 C -0.082 4.082 24 H 0.070 0.930 25 C -0.090 4.090 26 H 0.264 0.736 27 H -0.010 1.010 28 H -0.010 1.010 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.343 0.657 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -25.392 0.479 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.318 5.318 13 C -0.022 4.022 14 H 0.083 0.917 15 C -0.183 4.183 16 C -0.141 4.141 17 C -0.130 4.130 18 H 0.091 0.909 19 C -0.012 4.012 20 O -0.324 6.324 21 C -0.019 4.019 22 C -0.184 4.184 23 C -0.101 4.101 24 H 0.088 0.912 25 C -0.128 4.128 26 H 0.073 0.927 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.326 -25.422 -0.121 25.639 hybrid contribution -0.369 1.471 0.780 1.705 sum 2.957 -23.952 0.659 24.143 Atomic orbital electron populations 1.70096 1.07831 1.27871 1.51653 1.26010 0.95808 1.03452 0.94671 0.85484 0.78274 0.77961 0.79235 1.19155 1.20725 1.19103 1.21683 0.93552 0.92447 1.50633 0.92245 1.18957 0.94403 0.93137 0.94657 1.21377 0.98006 0.93024 1.00639 1.21821 0.94012 0.90281 0.99367 1.60586 1.19677 1.01403 1.50149 1.21629 0.96512 0.88663 0.95432 0.91685 1.22203 1.00897 0.97762 0.97439 1.21385 0.98007 0.93165 1.01534 1.21744 0.99662 0.95066 0.96539 0.90942 1.22691 0.92110 0.87391 0.98978 1.87882 1.68939 1.48474 1.27072 1.22716 0.99404 0.97263 0.82539 1.22197 0.99184 0.94770 1.02234 1.21167 0.98936 0.94218 0.95810 0.91156 1.21414 0.97875 0.92470 1.01004 0.92731 0.99141 0.99148 0.93164 0.92989 0.92368 0.95950 0.83891 0.91498 0.93047 0.91665 0.90680 0.88076 0.92594 0.92645 0.87775 0.89806 0.91438 0.91977 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.92 5.41 30.59 0.17 -3.75 16 11 C 0.07 2.60 5.48 86.30 0.47 3.07 16 12 N -0.69 -19.52 6.24 -491.48 -3.07 -22.59 16 13 C 0.09 2.02 2.47 44.93 0.11 2.13 16 14 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16 15 C -0.14 -2.92 5.16 30.61 0.16 -2.76 16 16 C -0.10 -1.66 5.26 30.58 0.16 -1.50 16 17 C -0.11 -1.75 2.12 -10.78 -0.02 -1.77 16 18 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 19 C 0.06 0.96 6.18 71.96 0.45 1.41 16 20 O -0.40 -7.35 10.76 -148.98 -1.60 -8.96 16 21 C 0.06 0.79 6.84 72.04 0.49 1.29 16 22 C -0.15 -2.08 5.47 30.66 0.17 -1.91 16 23 C -0.08 -1.34 2.01 -10.76 -0.02 -1.36 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 C -0.09 -1.75 4.86 30.58 0.15 -1.61 16 26 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 32 H 0.02 0.79 7.42 -2.39 -0.02 0.77 16 33 H 0.34 9.11 8.47 -89.69 -0.76 8.35 16 34 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 35 H 0.05 1.19 7.44 -2.39 -0.02 1.17 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.80 345.59 0.93 -63.87 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.16 Total: 14.72 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 3.12 Total: -36.42 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.78 Total: -80.07 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.60 Total: -8.96 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.80 0.93 -63.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.634 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds