Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00612 * 2 1 4 4 H 1.48497 * 109.46918 * 240.00148 * 3 2 1 5 5 H 1.48502 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47179 * 120.00044 * 3 2 1 7 7 C 1.37886 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47277 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99702 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.52123 * 34.92522 * 13 12 11 15 15 C 1.53029 * 109.49660 * 274.84874 * 13 12 11 16 16 C 1.52939 * 109.39127 * 179.73049 * 15 13 12 17 17 C 1.53044 * 109.63480 * 60.29834 * 16 15 13 18 18 H 1.09005 * 110.21079 * 61.15720 * 17 16 15 19 19 C 1.53281 * 109.01349 * 181.55291 * 17 16 15 20 20 O 1.42927 * 109.24181 * 61.12925 * 19 17 16 21 21 C 1.42974 * 114.17686 * 61.26874 * 20 19 17 22 22 C 1.53137 * 109.53997 * 299.19962 * 21 20 19 23 23 C 1.53090 * 109.06091 * 57.24585 * 22 21 20 24 24 H 1.09002 * 109.41934 * 62.35877 * 23 22 21 25 25 C 1.52781 * 109.80000 * 182.26530 * 23 22 21 26 26 H 0.97003 * 119.99189 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47316 * 59.99891 * 9 7 2 28 28 H 1.09009 * 109.46894 * 299.99946 * 9 7 2 29 29 H 1.09005 * 109.47090 * 59.99374 * 10 9 7 30 30 H 1.09003 * 109.46705 * 299.99866 * 10 9 7 31 31 H 1.09003 * 109.46680 * 60.00053 * 11 10 9 32 32 H 1.08995 * 109.47202 * 300.00048 * 11 10 9 33 33 H 1.00902 * 110.99849 * 303.94913 * 12 11 10 34 34 H 1.09009 * 109.48034 * 299.70341 * 15 13 12 35 35 H 1.08998 * 109.48186 * 59.73216 * 15 13 12 36 36 H 1.08998 * 109.44375 * 300.24798 * 16 15 13 37 37 H 1.09007 * 109.44236 * 180.35216 * 16 15 13 38 38 H 1.09002 * 109.51793 * 181.07497 * 19 17 16 39 39 H 1.09001 * 109.51825 * 301.18724 * 19 17 16 40 40 H 1.08994 * 109.44787 * 179.17687 * 21 20 19 41 41 H 1.09003 * 109.44021 * 59.21480 * 21 20 19 42 42 H 1.09004 * 109.53777 * 297.37164 * 22 21 20 43 43 H 1.08997 * 109.60631 * 177.16443 * 22 21 20 44 44 H 1.09006 * 109.43401 * 180.56556 * 25 23 22 45 45 H 1.08996 * 109.43911 * 300.48309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0018 11 6 1.4798 -4.9872 0.0025 12 7 2.4344 -6.1038 0.0031 13 6 1.7339 -7.3951 0.0031 14 1 0.8200 -7.3137 -0.5854 15 6 1.3826 -7.7855 1.4404 16 6 0.6477 -9.1268 1.4371 17 6 1.5476 -10.2048 0.8287 18 1 2.4545 -10.3176 1.4227 19 6 0.7837 -11.5333 0.7966 20 8 -0.3804 -11.3877 -0.0197 21 6 -0.1023 -11.0544 -1.3820 22 6 0.6375 -9.7149 -1.4408 23 6 1.9163 -9.8129 -0.6049 24 1 2.5707 -10.5731 -1.0315 25 6 2.6396 -8.4672 -0.6059 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6238 -2.5567 0.8904 29 1 2.8710 -3.6041 0.8922 30 1 2.8722 -3.6049 -0.8878 31 1 0.8536 -5.0454 -0.8878 32 1 0.8528 -5.0442 0.8922 33 1 3.0692 -6.0372 -0.7783 34 1 2.2972 -7.8736 2.0271 35 1 0.7418 -7.0205 1.8787 36 1 -0.2641 -9.0394 0.8463 37 1 0.3915 -9.4027 2.4601 38 1 1.4242 -12.3118 0.3820 39 1 0.4866 -11.8071 1.8090 40 1 -1.0384 -10.9770 -1.9350 41 1 0.5188 -11.8322 -1.8263 42 1 -0.0010 -8.9279 -1.0393 43 1 0.8944 -9.4840 -2.4746 44 1 3.5539 -8.5465 -0.0176 45 1 2.8900 -8.1907 -1.6300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723609862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -84.329752 kcal Electronic energy + Delta-G solvation = -20864.772834 eV Core-core repulsion = 17880.245437 eV Total energy + Delta-G solvation = -2984.527398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68392 -37.64057 -35.37805 -33.38550 -32.67196 -31.56302 -29.92329 -29.12507 -26.09767 -24.45008 -23.63204 -22.70904 -22.09801 -20.92428 -20.04882 -18.41916 -16.44748 -16.30833 -16.20320 -15.92363 -15.39353 -14.97027 -14.52492 -14.36303 -14.19854 -13.70080 -13.44145 -13.25475 -12.58071 -12.49279 -12.32729 -12.19525 -11.83429 -11.79214 -11.34206 -11.20144 -11.16457 -10.94996 -10.80169 -10.69315 -10.53334 -10.45512 -10.22289 -9.97025 -9.66734 -9.58745 -9.27462 -9.02417 -8.31420 -8.10461 -5.96759 -3.98820 3.35546 3.39486 3.42349 3.63715 4.25670 4.36409 4.40335 4.49186 4.70906 4.72082 4.85923 5.00508 5.08560 5.11470 5.24633 5.31849 5.38814 5.39567 5.40621 5.45602 5.52262 5.55272 5.71009 5.78057 5.79322 5.87297 5.89318 5.97973 6.06297 6.11891 6.21163 6.26043 6.37374 6.47650 6.76277 6.83538 6.95718 7.17545 7.42499 7.69446 7.72117 7.87412 8.03907 8.47235 9.08265 9.64875 11.14708 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044835 B = 0.002939 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.367034 B = 9523.934176 C = 9592.557214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.689 5.689 13 C 0.086 3.914 14 H 0.043 0.957 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.117 4.117 18 H 0.080 0.920 19 C 0.064 3.936 20 O -0.381 6.381 21 C 0.061 3.939 22 C -0.157 4.157 23 C -0.080 4.080 24 H 0.068 0.932 25 C -0.113 4.113 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.015 0.985 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.336 0.664 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 -24.792 -1.155 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.320 5.320 13 C -0.024 4.024 14 H 0.061 0.939 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.136 4.136 18 H 0.099 0.901 19 C -0.013 4.013 20 O -0.300 6.300 21 C -0.015 4.015 22 C -0.195 4.195 23 C -0.099 4.099 24 H 0.087 0.913 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.119 -24.677 -0.405 24.771 hybrid contribution 0.424 1.039 -1.077 1.556 sum 2.543 -23.637 -1.481 23.820 Atomic orbital electron populations 1.69964 1.06061 1.26640 1.50975 1.25037 0.94854 0.99249 0.95401 0.86652 0.79571 0.83130 0.78614 1.20285 1.21310 1.20214 1.21231 0.93015 0.91098 1.50419 0.92739 1.19058 0.94019 0.91383 0.97066 1.21621 0.99154 0.93075 1.00626 1.22152 0.94110 0.90832 0.99732 1.60583 1.20397 1.01302 1.49677 1.21539 0.95562 0.89058 0.96214 0.93918 1.21518 1.00512 0.95984 0.96479 1.21535 0.98650 0.94080 1.00566 1.21849 0.99265 0.95840 0.96631 0.90118 1.22676 0.87531 0.95583 0.95478 1.87940 1.30984 1.90480 1.20559 1.22582 1.00413 0.95186 0.83349 1.22364 0.97558 0.98931 1.00626 1.21055 0.96234 0.97466 0.95139 0.91330 1.21662 0.98850 0.93930 1.00682 0.92995 0.96868 0.96615 0.92611 0.93751 0.95962 0.91562 0.84613 0.91535 0.91845 0.91225 0.92014 0.93451 0.88944 0.89041 0.93502 0.90162 0.91030 0.91011 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 12 N -0.69 -10.20 6.31 -106.71 -0.67 -10.87 16 13 C 0.09 1.06 2.23 -67.70 -0.15 0.91 16 14 H 0.04 0.57 6.10 -51.93 -0.32 0.25 16 15 C -0.11 -1.29 5.43 -26.75 -0.15 -1.43 16 16 C -0.11 -1.13 4.78 -26.74 -0.13 -1.26 16 17 C -0.12 -1.02 2.60 -90.39 -0.23 -1.25 16 18 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 19 C 0.06 0.53 6.26 37.30 0.23 0.76 16 20 O -0.38 -3.89 10.08 -35.23 -0.36 -4.24 16 21 C 0.06 0.51 6.85 37.23 0.25 0.77 16 22 C -0.16 -1.39 4.78 -26.61 -0.13 -1.51 16 23 C -0.08 -0.70 2.48 -90.62 -0.22 -0.92 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 C -0.11 -1.13 4.71 -26.85 -0.13 -1.26 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.07 1.22 7.45 -51.93 -0.39 0.83 16 33 H 0.34 4.67 8.35 -39.29 -0.33 4.34 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.06 0.86 7.46 -51.93 -0.39 0.47 16 36 H 0.07 0.79 6.01 -51.93 -0.31 0.48 16 37 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.83 4.89 -51.93 -0.25 0.58 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -30.66 337.57 -9.88 -40.53 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.29 Total: -0.82 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.36 Total: -19.96 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.06 Total: -37.60 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.36 Total: -4.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.66 -9.88 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.797 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds