Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00612 * 2 1 4 4 H 1.48497 * 109.46918 * 240.00148 * 3 2 1 5 5 H 1.48502 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47179 * 120.00044 * 3 2 1 7 7 C 1.37886 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47277 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99702 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.52123 * 34.92522 * 13 12 11 15 15 C 1.53029 * 109.49660 * 274.84874 * 13 12 11 16 16 C 1.52939 * 109.39127 * 179.73049 * 15 13 12 17 17 C 1.53044 * 109.63480 * 60.29834 * 16 15 13 18 18 H 1.09005 * 110.21079 * 61.15720 * 17 16 15 19 19 C 1.53281 * 109.01349 * 181.55291 * 17 16 15 20 20 O 1.42927 * 109.24181 * 61.12925 * 19 17 16 21 21 C 1.42974 * 114.17686 * 61.26874 * 20 19 17 22 22 C 1.53137 * 109.53997 * 299.19962 * 21 20 19 23 23 C 1.53090 * 109.06091 * 57.24585 * 22 21 20 24 24 H 1.09002 * 109.41934 * 62.35877 * 23 22 21 25 25 C 1.52781 * 109.80000 * 182.26530 * 23 22 21 26 26 H 0.97003 * 119.99189 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47316 * 59.99891 * 9 7 2 28 28 H 1.09009 * 109.46894 * 299.99946 * 9 7 2 29 29 H 1.09005 * 109.47090 * 59.99374 * 10 9 7 30 30 H 1.09003 * 109.46705 * 299.99866 * 10 9 7 31 31 H 1.09003 * 109.46680 * 60.00053 * 11 10 9 32 32 H 1.08995 * 109.47202 * 300.00048 * 11 10 9 33 33 H 1.00902 * 110.99849 * 303.94913 * 12 11 10 34 34 H 1.09009 * 109.48034 * 299.70341 * 15 13 12 35 35 H 1.08998 * 109.48186 * 59.73216 * 15 13 12 36 36 H 1.08998 * 109.44375 * 300.24798 * 16 15 13 37 37 H 1.09007 * 109.44236 * 180.35216 * 16 15 13 38 38 H 1.09002 * 109.51793 * 181.07497 * 19 17 16 39 39 H 1.09001 * 109.51825 * 301.18724 * 19 17 16 40 40 H 1.08994 * 109.44787 * 179.17687 * 21 20 19 41 41 H 1.09003 * 109.44021 * 59.21480 * 21 20 19 42 42 H 1.09004 * 109.53777 * 297.37164 * 22 21 20 43 43 H 1.08997 * 109.60631 * 177.16443 * 22 21 20 44 44 H 1.09006 * 109.43401 * 180.56556 * 25 23 22 45 45 H 1.08996 * 109.43911 * 300.48309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0018 11 6 1.4798 -4.9872 0.0025 12 7 2.4344 -6.1038 0.0031 13 6 1.7339 -7.3951 0.0031 14 1 0.8200 -7.3137 -0.5854 15 6 1.3826 -7.7855 1.4404 16 6 0.6477 -9.1268 1.4371 17 6 1.5476 -10.2048 0.8287 18 1 2.4545 -10.3176 1.4227 19 6 0.7837 -11.5333 0.7966 20 8 -0.3804 -11.3877 -0.0197 21 6 -0.1023 -11.0544 -1.3820 22 6 0.6375 -9.7149 -1.4408 23 6 1.9163 -9.8129 -0.6049 24 1 2.5707 -10.5731 -1.0315 25 6 2.6396 -8.4672 -0.6059 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6238 -2.5567 0.8904 29 1 2.8710 -3.6041 0.8922 30 1 2.8722 -3.6049 -0.8878 31 1 0.8536 -5.0454 -0.8878 32 1 0.8528 -5.0442 0.8922 33 1 3.0692 -6.0372 -0.7783 34 1 2.2972 -7.8736 2.0271 35 1 0.7418 -7.0205 1.8787 36 1 -0.2641 -9.0394 0.8463 37 1 0.3915 -9.4027 2.4601 38 1 1.4242 -12.3118 0.3820 39 1 0.4866 -11.8071 1.8090 40 1 -1.0384 -10.9770 -1.9350 41 1 0.5188 -11.8322 -1.8263 42 1 -0.0010 -8.9279 -1.0393 43 1 0.8944 -9.4840 -2.4746 44 1 3.5539 -8.5465 -0.0176 45 1 2.8900 -8.1907 -1.6300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723609862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -103.180856 kcal Electronic energy + Delta-G solvation = -20865.590280 eV Core-core repulsion = 17880.245437 eV Total energy + Delta-G solvation = -2985.344843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44317 -38.61938 -36.72732 -35.20650 -33.41632 -33.23533 -30.90972 -30.24891 -27.80406 -25.46867 -24.62952 -23.82917 -23.27229 -22.02364 -21.67630 -19.20889 -18.48451 -17.11260 -17.09916 -16.90004 -16.59855 -16.30867 -15.96010 -15.47036 -15.20954 -14.96304 -14.40326 -14.36849 -14.10713 -13.69763 -13.39390 -13.31223 -13.17258 -13.05408 -12.75993 -12.50341 -12.48183 -12.29304 -12.03378 -11.96202 -11.77069 -11.57827 -11.49888 -11.33962 -11.05499 -11.00213 -10.76214 -10.56296 -10.27583 -9.35696 -8.21174 -6.32768 1.39177 1.42862 1.50838 2.40322 3.00951 3.11655 3.16850 3.63160 3.65021 3.92054 4.02023 4.13523 4.15431 4.19870 4.28301 4.39829 4.42982 4.47119 4.54209 4.57389 4.67735 4.71949 4.77358 4.83043 4.83148 4.88915 4.94999 5.00674 5.04441 5.14503 5.16928 5.19819 5.23362 5.26725 5.39427 5.40977 5.50520 5.57858 5.72842 5.83954 6.10733 6.26154 6.33236 6.52816 6.84003 7.36537 8.90744 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044835 B = 0.002939 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.367034 B = 9523.934176 C = 9592.557214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.075 3.925 12 N -0.688 5.688 13 C 0.086 3.914 14 H 0.033 0.967 15 C -0.104 4.104 16 C -0.105 4.105 17 C -0.114 4.114 18 H 0.092 0.908 19 C 0.062 3.938 20 O -0.403 6.403 21 C 0.060 3.940 22 C -0.156 4.156 23 C -0.077 4.077 24 H 0.088 0.912 25 C -0.106 4.106 26 H 0.264 0.736 27 H -0.010 1.010 28 H -0.011 1.011 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.344 0.656 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -25.898 -1.568 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.054 4.054 12 N -0.319 5.319 13 C -0.023 4.023 14 H 0.051 0.949 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.132 4.132 18 H 0.110 0.890 19 C -0.014 4.014 20 O -0.323 6.323 21 C -0.017 4.017 22 C -0.194 4.194 23 C -0.096 4.096 24 H 0.106 0.894 25 C -0.144 4.144 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.890 -25.805 -0.821 26.109 hybrid contribution -0.168 1.363 -0.937 1.663 sum 3.721 -24.442 -1.758 24.786 Atomic orbital electron populations 1.70104 1.07881 1.27885 1.51628 1.26033 0.95811 1.03519 0.94640 0.85465 0.78254 0.77860 0.79264 1.19025 1.20735 1.19130 1.21679 0.93578 0.92375 1.50677 0.92137 1.18964 0.94421 0.93240 0.94586 1.21371 0.97972 0.92847 1.00739 1.21821 0.93999 0.90517 0.99087 1.60513 1.19864 1.01381 1.50166 1.21600 0.95646 0.88565 0.96510 0.94925 1.21483 1.00195 0.96466 0.96102 1.21462 0.98251 0.93661 1.00880 1.21839 0.99307 0.95468 0.96635 0.88999 1.22782 0.87231 0.95524 0.95856 1.87916 1.32267 1.90588 1.21479 1.22669 1.00935 0.95222 0.82837 1.22335 0.97371 0.98663 1.00987 1.21064 0.96248 0.97033 0.95242 0.89405 1.21608 0.98367 0.93645 1.00787 0.92731 0.99209 0.99283 0.92922 0.92960 0.96363 0.92631 0.83727 0.91524 0.94163 0.92615 0.91491 0.91747 0.88258 0.88694 0.91864 0.92305 0.90208 0.90638 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.93 5.41 30.59 0.17 -3.76 16 11 C 0.08 2.72 5.48 86.30 0.47 3.20 16 12 N -0.69 -20.01 6.31 -491.53 -3.10 -23.11 16 13 C 0.09 2.08 2.23 44.92 0.10 2.18 16 14 H 0.03 0.88 6.10 -2.39 -0.01 0.86 16 15 C -0.10 -2.50 5.43 30.58 0.17 -2.34 16 16 C -0.10 -2.07 4.78 30.59 0.15 -1.93 16 17 C -0.11 -1.74 2.60 -10.64 -0.03 -1.77 16 18 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 19 C 0.06 0.89 6.26 72.08 0.45 1.34 16 20 O -0.40 -7.62 10.08 -148.98 -1.50 -9.12 16 21 C 0.06 0.90 6.85 72.03 0.49 1.39 16 22 C -0.16 -2.52 4.78 30.67 0.15 -2.38 16 23 C -0.08 -1.16 2.48 -10.80 -0.03 -1.19 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 C -0.11 -1.91 4.71 30.52 0.14 -1.77 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 28 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 29 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 32 H 0.06 2.13 7.45 -2.39 -0.02 2.11 16 33 H 0.34 9.11 8.35 -89.69 -0.75 8.36 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.04 1.13 7.46 -2.39 -0.02 1.11 16 36 H 0.06 1.27 6.01 -2.39 -0.01 1.26 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 1.21 4.89 -2.38 -0.01 1.20 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.07 1.14 8.12 -2.39 -0.02 1.13 16 Total: -1.00 -66.21 337.57 0.98 -65.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.19 Total: 14.85 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.08 Total: -36.95 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.82 Total: -81.09 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -1.50 Total: -9.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.21 0.98 -65.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.948 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds