Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47114 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00095 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47654 * 35.03540 * 13 12 11 15 15 C 1.53026 * 109.48529 * 275.00052 * 13 12 11 16 16 C 1.52988 * 109.33579 * 179.72752 * 15 13 12 17 17 C 1.52796 * 109.66772 * 59.91975 * 16 15 13 18 18 H 1.08998 * 109.39413 * 180.71954 * 17 16 15 19 19 C 1.53004 * 109.82821 * 60.63763 * 17 16 15 20 20 O 1.42941 * 109.31275 * 181.59380 * 19 17 16 21 21 C 1.42870 * 114.19582 * 60.83383 * 20 19 17 22 22 C 1.53101 * 109.53749 * 299.13699 * 21 20 19 23 23 C 1.53120 * 109.84463 * 300.53092 * 17 16 15 24 24 H 1.09003 * 109.67268 * 298.05400 * 23 17 16 25 25 C 1.52952 * 109.48228 * 155.07658 * 13 12 11 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 1.00892 * 111.00273 * 303.95598 * 12 11 10 34 34 H 1.08994 * 109.49144 * 299.69279 * 15 13 12 35 35 H 1.08999 * 109.48922 * 59.77591 * 15 13 12 36 36 H 1.08999 * 109.43590 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.44150 * 299.89541 * 16 15 13 38 38 H 1.08997 * 109.50175 * 301.54547 * 19 17 16 39 39 H 1.09009 * 109.49606 * 61.64074 * 19 17 16 40 40 H 1.09006 * 109.46025 * 59.15747 * 21 20 19 41 41 H 1.09001 * 109.46328 * 179.12465 * 21 20 19 42 42 H 1.08999 * 109.55168 * 177.55701 * 22 21 20 43 43 H 1.08991 * 109.55116 * 297.75274 * 22 21 20 44 44 H 1.09005 * 109.44408 * 300.30830 * 25 13 12 45 45 H 1.09000 * 109.44752 * 60.21667 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7348 -7.3950 0.0018 14 1 0.8213 -7.3136 -0.5872 15 6 1.3825 -7.7832 1.4394 16 6 0.6475 -9.1250 1.4361 17 6 1.5428 -10.2002 0.8220 18 1 1.0103 -11.1512 0.8102 19 6 2.8223 -10.3445 1.6486 20 8 3.6675 -11.3259 1.0440 21 6 4.0780 -11.0056 -0.2864 22 6 2.8460 -10.8842 -1.1871 23 6 1.9115 -9.8126 -0.6126 24 1 1.0082 -9.7499 -1.2195 25 6 2.6406 -8.4670 -0.6065 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.0694 -6.0366 -0.7812 34 1 2.2964 -7.8704 2.0269 35 1 0.7406 -7.0180 1.8758 36 1 0.3962 -9.4034 2.4595 37 1 -0.2667 -9.0364 0.8493 38 1 3.3429 -9.3876 1.6833 39 1 2.5678 -10.6576 2.6613 40 1 4.6191 -10.0593 -0.2816 41 1 4.7285 -11.7938 -0.6655 42 1 3.1556 -10.5973 -2.1921 43 1 2.3261 -11.8413 -1.2250 44 1 2.8968 -8.1882 -1.6286 45 1 3.5519 -8.5507 -0.0144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723609865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -87.548677 kcal Electronic energy + Delta-G solvation = -20919.561996 eV Core-core repulsion = 17934.895016 eV Total energy + Delta-G solvation = -2984.666981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81918 -37.58563 -35.53547 -33.72540 -33.24501 -31.55666 -29.35222 -28.89336 -25.67887 -24.93628 -24.21246 -22.56390 -22.10201 -20.67754 -20.41117 -18.48781 -16.69740 -16.54000 -16.29649 -15.81773 -15.62479 -15.08395 -14.52949 -14.26551 -13.90348 -13.70895 -13.51354 -13.30928 -12.96317 -12.75866 -12.50854 -12.31224 -11.85860 -11.61451 -11.55828 -11.38077 -11.31210 -10.95289 -10.87087 -10.67536 -10.47408 -10.30619 -10.16006 -10.10283 -9.82200 -9.67334 -9.48462 -8.50865 -8.30370 -8.22868 -6.33783 -4.02263 3.45344 3.47626 3.64184 3.66263 4.11032 4.30956 4.40345 4.56675 4.62662 4.67008 4.89084 4.92298 5.02503 5.05339 5.17125 5.23145 5.26794 5.32216 5.43375 5.43724 5.45921 5.54196 5.64195 5.69417 5.70726 5.73629 5.79080 5.85343 5.97203 6.03624 6.09131 6.14495 6.22019 6.32977 6.60025 6.66242 6.96329 6.99062 7.28695 7.45123 7.54463 7.61996 8.25924 8.49547 8.91598 9.70082 11.06941 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043063 B = 0.002981 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.056575 B = 9391.073436 C = 9584.370343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.600 4.600 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.060 3.940 12 N -0.688 5.688 13 C 0.088 3.912 14 H 0.040 0.960 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.116 4.116 18 H 0.075 0.925 19 C 0.061 3.939 20 O -0.385 6.385 21 C 0.058 3.942 22 C -0.151 4.151 23 C -0.082 4.082 24 H 0.074 0.926 25 C -0.121 4.121 26 H 0.268 0.732 27 H 0.007 0.993 28 H 0.004 0.996 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.337 0.663 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -24.026 -0.473 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.639 4.639 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.138 4.138 11 C -0.069 4.069 12 N -0.319 5.319 13 C -0.022 4.022 14 H 0.058 0.942 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.134 4.134 18 H 0.093 0.907 19 C -0.016 4.016 20 O -0.304 6.304 21 C -0.019 4.019 22 C -0.189 4.189 23 C -0.101 4.101 24 H 0.093 0.907 25 C -0.159 4.159 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.409 -22.526 0.302 22.955 hybrid contribution -0.318 -1.449 -1.160 1.884 sum 4.091 -23.975 -0.858 24.337 Atomic orbital electron populations 1.70783 1.06894 1.30530 1.46921 1.25871 0.96574 1.02776 0.93842 0.83545 0.74877 0.75321 0.76517 1.20786 1.21480 1.21410 1.22069 0.94308 0.92066 1.55436 0.93333 1.19189 0.94659 0.93231 0.95763 1.21488 0.98882 0.92526 1.00905 1.22159 0.94141 0.90904 0.99673 1.60550 1.20360 1.01205 1.49756 1.21475 0.95497 0.89088 0.96124 0.94188 1.21585 1.00724 0.95931 0.96637 1.21465 0.98203 0.94522 1.00872 1.21684 0.97078 0.99335 0.95326 0.90653 1.22761 0.90026 0.92571 0.96221 1.87902 1.67579 1.46524 1.28370 1.22601 0.95582 1.01108 0.82619 1.22255 0.97472 0.99554 0.99587 1.21194 0.98563 0.94293 0.96063 0.90712 1.21882 0.99260 0.93872 1.00857 0.92177 0.97521 0.97790 0.93544 0.92408 0.91589 0.95988 0.84472 0.91118 0.91718 0.91545 0.91768 0.92023 0.89119 0.92778 0.89196 0.90853 0.91113 0.91989 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 10 C -0.10 -2.12 5.41 -26.73 -0.14 -2.27 16 11 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 12 N -0.69 -9.94 6.31 -106.74 -0.67 -10.61 16 13 C 0.09 1.05 2.49 -67.72 -0.17 0.88 16 14 H 0.04 0.51 7.80 -51.93 -0.41 0.11 16 15 C -0.11 -1.25 5.17 -26.72 -0.14 -1.39 16 16 C -0.11 -1.03 5.44 -26.84 -0.15 -1.17 16 17 C -0.12 -1.02 2.59 -90.66 -0.23 -1.25 16 18 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 19 C 0.06 0.57 5.59 37.16 0.21 0.78 16 20 O -0.39 -4.07 10.76 -35.23 -0.38 -4.45 16 21 C 0.06 0.49 6.56 37.21 0.24 0.73 16 22 C -0.15 -1.18 5.64 -26.50 -0.15 -1.32 16 23 C -0.08 -0.72 2.61 -90.36 -0.24 -0.95 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 C -0.12 -1.19 3.91 -26.73 -0.10 -1.29 16 26 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 28 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.18 7.43 -51.93 -0.39 0.79 16 32 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.34 4.60 8.34 -39.30 -0.33 4.27 16 34 H 0.07 0.82 6.46 -51.93 -0.34 0.48 16 35 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.61 4.90 -51.93 -0.25 0.36 16 39 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.05 0.46 6.48 -51.93 -0.34 0.12 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.07 0.76 4.85 -51.93 -0.25 0.51 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -31.33 333.98 -9.85 -41.18 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.08 Total: -0.18 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.42 Total: -23.76 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.08 Total: -38.49 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.45 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.33 -9.85 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.371 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds