Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47114 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00095 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47654 * 35.03540 * 13 12 11 15 15 C 1.53026 * 109.48529 * 275.00052 * 13 12 11 16 16 C 1.52988 * 109.33579 * 179.72752 * 15 13 12 17 17 C 1.52796 * 109.66772 * 59.91975 * 16 15 13 18 18 H 1.08998 * 109.39413 * 180.71954 * 17 16 15 19 19 C 1.53004 * 109.82821 * 60.63763 * 17 16 15 20 20 O 1.42941 * 109.31275 * 181.59380 * 19 17 16 21 21 C 1.42870 * 114.19582 * 60.83383 * 20 19 17 22 22 C 1.53101 * 109.53749 * 299.13699 * 21 20 19 23 23 C 1.53120 * 109.84463 * 300.53092 * 17 16 15 24 24 H 1.09003 * 109.67268 * 298.05400 * 23 17 16 25 25 C 1.52952 * 109.48228 * 155.07658 * 13 12 11 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 1.00892 * 111.00273 * 303.95598 * 12 11 10 34 34 H 1.08994 * 109.49144 * 299.69279 * 15 13 12 35 35 H 1.08999 * 109.48922 * 59.77591 * 15 13 12 36 36 H 1.08999 * 109.43590 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.44150 * 299.89541 * 16 15 13 38 38 H 1.08997 * 109.50175 * 301.54547 * 19 17 16 39 39 H 1.09009 * 109.49606 * 61.64074 * 19 17 16 40 40 H 1.09006 * 109.46025 * 59.15747 * 21 20 19 41 41 H 1.09001 * 109.46328 * 179.12465 * 21 20 19 42 42 H 1.08999 * 109.55168 * 177.55701 * 22 21 20 43 43 H 1.08991 * 109.55116 * 297.75274 * 22 21 20 44 44 H 1.09005 * 109.44408 * 300.30830 * 25 13 12 45 45 H 1.09000 * 109.44752 * 60.21667 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7348 -7.3950 0.0018 14 1 0.8213 -7.3136 -0.5872 15 6 1.3825 -7.7832 1.4394 16 6 0.6475 -9.1250 1.4361 17 6 1.5428 -10.2002 0.8220 18 1 1.0103 -11.1512 0.8102 19 6 2.8223 -10.3445 1.6486 20 8 3.6675 -11.3259 1.0440 21 6 4.0780 -11.0056 -0.2864 22 6 2.8460 -10.8842 -1.1871 23 6 1.9115 -9.8126 -0.6126 24 1 1.0082 -9.7499 -1.2195 25 6 2.6406 -8.4670 -0.6065 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.0694 -6.0366 -0.7812 34 1 2.2964 -7.8704 2.0269 35 1 0.7406 -7.0180 1.8758 36 1 0.3962 -9.4034 2.4595 37 1 -0.2667 -9.0364 0.8493 38 1 3.3429 -9.3876 1.6833 39 1 2.5678 -10.6576 2.6613 40 1 4.6191 -10.0593 -0.2816 41 1 4.7285 -11.7938 -0.6655 42 1 3.1556 -10.5973 -2.1921 43 1 2.3261 -11.8413 -1.2250 44 1 2.8968 -8.1882 -1.6286 45 1 3.5519 -8.5507 -0.0144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723609865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -107.013258 kcal Electronic energy + Delta-G solvation = -20920.406044 eV Core-core repulsion = 17934.895016 eV Total energy + Delta-G solvation = -2985.511028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58028 -38.59161 -36.90046 -35.50406 -33.96910 -33.20759 -30.43790 -29.90369 -27.32467 -25.88823 -25.01174 -24.37948 -22.94464 -22.15379 -21.58628 -19.27353 -18.90966 -17.27933 -17.04449 -16.92597 -16.46938 -16.18277 -15.72515 -15.65417 -15.24185 -15.06448 -14.90447 -14.39319 -14.07544 -13.94527 -13.48671 -13.44989 -13.15802 -13.09164 -12.60658 -12.49528 -12.30079 -12.19682 -12.13356 -12.00306 -11.83050 -11.73552 -11.63354 -11.36927 -11.02787 -10.92692 -10.65694 -10.56289 -10.21281 -9.43846 -8.71557 -6.41961 1.51641 1.60518 1.80069 2.55793 2.96585 3.05551 3.13604 3.56473 3.66330 3.82965 3.96786 4.04694 4.07104 4.17345 4.27150 4.27517 4.35133 4.41725 4.47563 4.50163 4.53671 4.56746 4.62593 4.75477 4.80464 4.81391 4.89568 4.97008 4.98938 5.01842 5.06442 5.07101 5.19545 5.25799 5.30445 5.37841 5.40502 5.44915 5.51047 5.95654 6.08061 6.16301 6.27794 6.43923 6.55832 7.40514 8.69400 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043063 B = 0.002981 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.056575 B = 9391.073436 C = 9584.370343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.119 2.881 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.621 4.621 8 H 0.051 0.949 9 C 0.009 3.991 10 C -0.086 4.086 11 C 0.075 3.925 12 N -0.688 5.688 13 C 0.088 3.912 14 H 0.034 0.966 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.110 4.110 18 H 0.081 0.919 19 C 0.060 3.940 20 O -0.402 6.402 21 C 0.052 3.948 22 C -0.145 4.145 23 C -0.081 4.081 24 H 0.077 0.923 25 C -0.113 4.113 26 H 0.255 0.745 27 H -0.013 1.013 28 H -0.013 1.013 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.020 0.980 33 H 0.344 0.656 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -24.984 -0.901 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.659 4.659 8 H 0.069 0.931 9 C -0.028 4.028 10 C -0.124 4.124 11 C -0.054 4.054 12 N -0.319 5.319 13 C -0.022 4.022 14 H 0.052 0.948 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.129 4.129 18 H 0.100 0.900 19 C -0.016 4.016 20 O -0.321 6.321 21 C -0.024 4.024 22 C -0.183 4.183 23 C -0.100 4.100 24 H 0.095 0.905 25 C -0.151 4.151 26 H 0.064 0.936 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.554 -23.525 -0.130 24.172 hybrid contribution -0.673 -1.197 -1.019 1.710 sum 4.881 -24.722 -1.149 25.225 Atomic orbital electron populations 1.70921 1.07977 1.29802 1.48878 1.27525 0.96632 1.07036 0.92629 0.82921 0.74122 0.70864 0.78128 1.20776 1.19248 1.19338 1.22526 0.94760 0.93519 1.55088 0.93084 1.19139 0.95117 0.94614 0.93941 1.21263 0.97753 0.92659 1.00740 1.21828 0.93977 0.90270 0.99320 1.60491 1.19883 1.01364 1.50209 1.21555 0.95543 0.88367 0.96704 0.94790 1.21561 1.00485 0.96702 0.95979 1.21417 0.97984 0.93328 1.01713 1.21640 0.96724 0.99316 0.95235 0.90025 1.22780 0.90030 0.92068 0.96732 1.87881 1.67839 1.46992 1.29427 1.22755 0.96101 1.01603 0.81972 1.22218 0.96884 0.99281 0.99922 1.21198 0.98796 0.93877 0.96178 0.90468 1.21807 0.98682 0.93691 1.00872 0.93613 0.99443 0.99454 0.93098 0.92986 0.92252 0.96158 0.83749 0.91414 0.93483 0.90487 0.91621 0.92850 0.88445 0.92949 0.87836 0.89642 0.90721 0.91361 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 2 C -0.04 -2.46 5.46 84.65 0.46 -1.99 16 3 Si 1.12 51.08 29.90 68.60 2.05 53.13 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.62 -36.67 9.11 25.60 0.23 -36.44 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.01 0.51 4.28 29.85 0.13 0.64 16 10 C -0.09 -3.67 5.41 30.60 0.17 -3.50 16 11 C 0.08 2.63 5.48 86.30 0.47 3.10 16 12 N -0.69 -19.32 6.31 -491.61 -3.10 -22.43 16 13 C 0.09 2.01 2.49 44.91 0.11 2.12 16 14 H 0.03 0.84 7.80 -2.39 -0.02 0.82 16 15 C -0.11 -2.39 5.17 30.60 0.16 -2.23 16 16 C -0.11 -1.80 5.44 30.52 0.17 -1.63 16 17 C -0.11 -1.74 2.59 -10.82 -0.03 -1.77 16 18 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 19 C 0.06 1.04 5.59 71.98 0.40 1.44 16 20 O -0.40 -7.85 10.76 -148.98 -1.60 -9.46 16 21 C 0.05 0.78 6.56 72.02 0.47 1.25 16 22 C -0.15 -1.92 5.64 30.74 0.17 -1.74 16 23 C -0.08 -1.26 2.61 -10.62 -0.03 -1.29 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 C -0.11 -2.03 3.91 30.59 0.12 -1.91 16 26 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 27 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 28 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.15 7.43 -2.39 -0.02 2.13 16 32 H 0.02 0.71 8.06 -2.38 -0.02 0.69 16 33 H 0.34 8.92 8.34 -89.70 -0.75 8.17 16 34 H 0.07 1.52 6.46 -2.39 -0.02 1.51 16 35 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.01 4.90 -2.39 -0.01 0.99 16 39 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.05 0.79 6.48 -2.38 -0.02 0.78 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.16 8.12 -2.38 -0.02 1.14 16 45 H 0.07 1.36 4.85 -2.39 -0.01 1.35 16 Total: -1.00 -66.95 333.98 0.95 -66.00 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.30 Total: 16.08 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.01 Total: -43.97 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.81 Total: -81.79 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.60 Total: -9.46 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -66.95 0.95 -66.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723609865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.012 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds