Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47346 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.46875 * 30.00499 * 3 2 1 6 6 H 1.48506 * 109.46696 * 149.99862 * 3 2 1 7 7 C 1.37880 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99419 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47210 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99902 * 183.40939 * 12 11 10 14 14 H 1.08999 * 109.47276 * 11.35429 * 13 12 11 15 15 C 1.53005 * 109.47069 * 131.34871 * 13 12 11 16 16 C 1.53000 * 117.49718 * 7.47883 * 15 13 12 17 17 C 1.52997 * 117.49996 * 298.85493 * 15 13 12 18 18 C 1.52995 * 109.47161 * 251.35020 * 13 12 11 19 19 H 1.09005 * 109.52326 * 300.00007 * 18 13 12 20 20 C 1.53174 * 109.52245 * 60.12629 * 18 13 12 21 21 C 1.53190 * 109.02989 * 176.82517 * 20 18 13 22 22 C 1.53094 * 109.21399 * 303.11479 * 21 20 18 23 23 O 1.42899 * 109.41598 * 57.57295 * 22 21 20 24 24 C 1.42896 * 114.09984 * 298.84599 * 23 22 21 25 25 H 0.97005 * 119.99658 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46943 * 60.00020 * 9 7 2 27 27 H 1.08997 * 109.47234 * 299.99683 * 9 7 2 28 28 H 1.08994 * 109.47554 * 299.99787 * 10 9 7 29 29 H 1.09000 * 109.47457 * 59.99918 * 10 9 7 30 30 H 1.09003 * 109.46783 * 299.99582 * 11 10 9 31 31 H 1.08998 * 109.47631 * 59.99821 * 11 10 9 32 32 H 1.00893 * 111.00286 * 59.45409 * 12 11 10 33 33 H 1.09001 * 115.55175 * 153.18010 * 15 13 12 34 34 H 1.09005 * 117.50293 * 359.97438 * 16 15 13 35 35 H 1.08995 * 117.50268 * 145.02463 * 16 15 13 36 36 H 1.09001 * 117.50174 * 214.98088 * 17 15 13 37 37 H 1.08998 * 117.49968 * 359.97438 * 17 15 13 38 38 H 1.08998 * 109.54470 * 296.75322 * 20 18 13 39 39 H 1.08997 * 109.54387 * 57.02515 * 20 18 13 40 40 H 1.08997 * 109.52473 * 183.17628 * 21 20 18 41 41 H 1.08997 * 109.52250 * 63.05153 * 21 20 18 42 42 H 1.09001 * 109.47515 * 297.59308 * 22 21 20 43 43 H 1.09003 * 109.48814 * 177.56895 * 22 21 20 44 44 H 1.09000 * 109.47945 * 301.17338 * 24 23 22 45 45 H 1.09001 * 109.48093 * 181.13711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0213 -2.6366 -0.0001 11 6 5.5513 -2.6367 0.0012 12 7 6.0410 -4.0218 0.0004 13 6 7.5071 -4.0619 0.0831 14 1 7.8845 -3.0690 0.3279 15 6 7.9297 -5.0506 1.1717 16 6 6.8349 -5.9056 1.8129 17 6 7.4740 -4.7622 2.6035 18 6 8.0818 -4.5086 -1.2626 19 1 7.7049 -5.5015 -1.5081 20 6 7.6621 -3.5177 -2.3527 21 6 8.3081 -3.9310 -3.6788 22 6 9.8274 -3.9925 -3.5015 23 8 10.1466 -4.9092 -2.4527 24 6 9.6099 -4.5478 -1.1786 25 1 -0.4850 0.8401 0.0004 26 1 3.8744 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8894 28 1 3.6577 -3.1507 0.8896 29 1 3.6583 -3.1503 -0.8903 30 1 5.9154 -2.1226 -0.8884 31 1 5.9141 -2.1232 0.8916 32 1 5.7108 -4.5216 -0.8114 33 1 8.9108 -5.5061 1.0379 34 1 5.8135 -5.7636 1.4597 35 1 7.0956 -6.9240 2.1011 36 1 8.1553 -5.0282 3.4117 37 1 6.8736 -3.8679 2.7701 38 1 6.5770 -3.5273 -2.4560 39 1 7.9952 -2.5157 -2.0825 40 1 8.0604 -3.1996 -4.4481 41 1 7.9359 -4.9116 -3.9753 42 1 10.2039 -3.0021 -3.2457 43 1 10.2887 -4.3279 -4.4305 44 1 9.9836 -3.5647 -0.8924 45 1 9.9143 -5.2835 -0.4341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723967547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = -44.154914 kcal Electronic energy + Delta-G solvation = -21032.572407 eV Core-core repulsion = 18049.787121 eV Total energy + Delta-G solvation = -2982.785286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09822 -38.01325 -35.57818 -34.17287 -32.88378 -32.02137 -30.68348 -27.27586 -25.78640 -24.55767 -23.00203 -22.50619 -21.84739 -20.48222 -20.19471 -19.46855 -16.86097 -16.70943 -16.37480 -15.63132 -15.28809 -14.94137 -14.72290 -14.42453 -14.20522 -13.88037 -13.74387 -12.98067 -12.72563 -12.68011 -12.44895 -12.10719 -11.73661 -11.55292 -11.51845 -11.27720 -11.24468 -10.98541 -10.86028 -10.78564 -10.41362 -10.12302 -9.94167 -9.82129 -9.75404 -9.72612 -9.50332 -9.16653 -8.53316 -8.20111 -6.03556 -4.01211 3.29772 3.37398 3.40968 3.61321 3.90684 4.27196 4.45323 4.46146 4.51786 4.63367 4.77028 4.90075 5.01395 5.04496 5.15678 5.22487 5.30096 5.30965 5.33917 5.45999 5.48410 5.59050 5.64483 5.65035 5.75281 5.79603 5.83100 5.85615 5.95751 6.06932 6.11328 6.17586 6.29912 6.52989 6.55901 6.59850 6.91457 6.94918 7.22859 7.35994 7.43696 7.57312 7.81087 8.55755 9.02179 9.59167 11.10089 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.004284 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.434848 B = 6534.842061 C = 7496.873773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.056 3.944 12 N -0.680 5.680 13 C 0.123 3.877 14 H 0.070 0.930 15 C -0.157 4.157 16 C -0.160 4.160 17 C -0.174 4.174 18 C -0.138 4.138 19 H 0.084 0.916 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.060 3.940 23 O -0.384 6.384 24 C 0.068 3.932 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.341 0.659 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.148 -9.492 -3.011 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.136 4.136 11 C -0.072 4.072 12 N -0.310 5.310 13 C 0.012 3.988 14 H 0.088 0.912 15 C -0.176 4.176 16 C -0.197 4.197 17 C -0.211 4.211 18 C -0.158 4.158 19 H 0.103 0.897 20 C -0.160 4.160 21 C -0.192 4.192 22 C -0.017 4.017 23 O -0.303 6.303 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.998 -9.607 -2.360 23.212 hybrid contribution 0.366 1.527 -0.883 1.802 sum 21.364 -8.080 -3.243 23.070 Atomic orbital electron populations 1.69919 1.06298 1.26816 1.51335 1.25039 0.94719 0.99138 0.94652 0.86776 0.80365 0.83708 0.78401 1.20402 1.21388 1.19083 1.21153 0.89542 0.94434 1.50522 0.91046 1.19533 0.97147 0.92351 0.95986 1.21423 0.91175 0.99517 1.01507 1.22266 0.97594 0.87653 0.99734 1.60551 1.07533 1.15684 1.47242 1.20980 0.88417 0.97700 0.91680 0.91188 1.22425 0.98558 1.02683 0.93895 1.22883 0.99725 0.94120 1.02970 1.22804 1.03779 1.01301 0.93263 1.22341 0.96905 1.00654 0.95901 0.89745 1.21721 1.01252 0.98770 0.94267 1.22168 0.96311 1.02669 0.98072 1.22578 0.94789 0.93317 0.91026 1.87927 1.74828 1.49835 1.17684 1.22673 0.92171 1.00732 0.85336 0.92782 0.96729 0.97407 0.92003 0.93138 0.95662 0.91693 0.84044 0.88340 0.86695 0.90342 0.89906 0.88732 0.90989 0.91806 0.90814 0.91001 0.93338 0.89055 0.93270 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 10 C -0.10 -1.91 5.44 -26.73 -0.15 -2.05 16 11 C 0.06 0.86 5.10 -3.82 -0.02 0.84 16 12 N -0.68 -8.69 4.27 -106.72 -0.46 -9.14 16 13 C 0.12 1.34 2.14 -67.71 -0.14 1.20 16 14 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 15 C -0.16 -1.64 5.51 -90.62 -0.50 -2.14 16 16 C -0.16 -1.80 9.85 -26.73 -0.26 -2.06 16 17 C -0.17 -1.95 10.19 -26.73 -0.27 -2.23 16 18 C -0.14 -1.36 1.77 -90.48 -0.16 -1.52 16 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.12 -1.24 4.27 -26.54 -0.11 -1.35 16 21 C -0.15 -1.39 6.13 -26.58 -0.16 -1.55 16 22 C 0.06 0.53 6.84 37.21 0.25 0.78 16 23 O -0.38 -4.16 10.76 -35.23 -0.38 -4.54 16 24 C 0.07 0.65 5.83 37.21 0.22 0.86 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.38 6.93 -51.93 -0.36 0.02 16 31 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.34 4.24 7.40 -39.30 -0.29 3.95 16 33 H 0.10 0.91 6.13 -51.93 -0.32 0.59 16 34 H 0.11 1.48 6.94 -51.93 -0.36 1.12 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.83 6.26 -51.93 -0.33 0.51 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -30.26 344.03 -9.63 -39.89 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.23 Total: 1.83 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -1.85 Total: -23.05 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.32 Total: -36.53 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.26 -9.63 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.262 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds