Wall clock time and date at job start Mon Mar 30 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47346 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.46875 * 30.00499 * 3 2 1 6 6 H 1.48506 * 109.46696 * 149.99862 * 3 2 1 7 7 C 1.37880 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99419 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47210 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99902 * 183.40939 * 12 11 10 14 14 H 1.08999 * 109.47276 * 11.35429 * 13 12 11 15 15 C 1.53005 * 109.47069 * 131.34871 * 13 12 11 16 16 C 1.53000 * 117.49718 * 7.47883 * 15 13 12 17 17 C 1.52997 * 117.49996 * 298.85493 * 15 13 12 18 18 C 1.52995 * 109.47161 * 251.35020 * 13 12 11 19 19 H 1.09005 * 109.52326 * 300.00007 * 18 13 12 20 20 C 1.53174 * 109.52245 * 60.12629 * 18 13 12 21 21 C 1.53190 * 109.02989 * 176.82517 * 20 18 13 22 22 C 1.53094 * 109.21399 * 303.11479 * 21 20 18 23 23 O 1.42899 * 109.41598 * 57.57295 * 22 21 20 24 24 C 1.42896 * 114.09984 * 298.84599 * 23 22 21 25 25 H 0.97005 * 119.99658 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46943 * 60.00020 * 9 7 2 27 27 H 1.08997 * 109.47234 * 299.99683 * 9 7 2 28 28 H 1.08994 * 109.47554 * 299.99787 * 10 9 7 29 29 H 1.09000 * 109.47457 * 59.99918 * 10 9 7 30 30 H 1.09003 * 109.46783 * 299.99582 * 11 10 9 31 31 H 1.08998 * 109.47631 * 59.99821 * 11 10 9 32 32 H 1.00893 * 111.00286 * 59.45409 * 12 11 10 33 33 H 1.09001 * 115.55175 * 153.18010 * 15 13 12 34 34 H 1.09005 * 117.50293 * 359.97438 * 16 15 13 35 35 H 1.08995 * 117.50268 * 145.02463 * 16 15 13 36 36 H 1.09001 * 117.50174 * 214.98088 * 17 15 13 37 37 H 1.08998 * 117.49968 * 359.97438 * 17 15 13 38 38 H 1.08998 * 109.54470 * 296.75322 * 20 18 13 39 39 H 1.08997 * 109.54387 * 57.02515 * 20 18 13 40 40 H 1.08997 * 109.52473 * 183.17628 * 21 20 18 41 41 H 1.08997 * 109.52250 * 63.05153 * 21 20 18 42 42 H 1.09001 * 109.47515 * 297.59308 * 22 21 20 43 43 H 1.09003 * 109.48814 * 177.56895 * 22 21 20 44 44 H 1.09000 * 109.47945 * 301.17338 * 24 23 22 45 45 H 1.09001 * 109.48093 * 181.13711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0213 -2.6366 -0.0001 11 6 5.5513 -2.6367 0.0012 12 7 6.0410 -4.0218 0.0004 13 6 7.5071 -4.0619 0.0831 14 1 7.8845 -3.0690 0.3279 15 6 7.9297 -5.0506 1.1717 16 6 6.8349 -5.9056 1.8129 17 6 7.4740 -4.7622 2.6035 18 6 8.0818 -4.5086 -1.2626 19 1 7.7049 -5.5015 -1.5081 20 6 7.6621 -3.5177 -2.3527 21 6 8.3081 -3.9310 -3.6788 22 6 9.8274 -3.9925 -3.5015 23 8 10.1466 -4.9092 -2.4527 24 6 9.6099 -4.5478 -1.1786 25 1 -0.4850 0.8401 0.0004 26 1 3.8744 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8894 28 1 3.6577 -3.1507 0.8896 29 1 3.6583 -3.1503 -0.8903 30 1 5.9154 -2.1226 -0.8884 31 1 5.9141 -2.1232 0.8916 32 1 5.7108 -4.5216 -0.8114 33 1 8.9108 -5.5061 1.0379 34 1 5.8135 -5.7636 1.4597 35 1 7.0956 -6.9240 2.1011 36 1 8.1553 -5.0282 3.4117 37 1 6.8736 -3.8679 2.7701 38 1 6.5770 -3.5273 -2.4560 39 1 7.9952 -2.5157 -2.0825 40 1 8.0604 -3.1996 -4.4481 41 1 7.9359 -4.9116 -3.9753 42 1 10.2039 -3.0021 -3.2457 43 1 10.2887 -4.3279 -4.4305 44 1 9.9836 -3.5647 -0.8924 45 1 9.9143 -5.2835 -0.4341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723967547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:11 Heat of formation + Delta-G solvation = -61.952553 kcal Electronic energy + Delta-G solvation = -21033.344170 eV Core-core repulsion = 18049.787121 eV Total energy + Delta-G solvation = -2983.557049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91498 -38.89136 -36.83101 -35.50240 -34.40671 -33.17818 -32.05412 -28.73023 -26.85810 -25.55918 -23.86835 -23.77163 -22.95462 -21.97030 -21.05473 -20.52317 -18.90482 -17.65111 -17.18118 -16.50742 -16.46084 -16.21126 -15.81019 -15.74318 -15.19421 -15.07035 -14.80590 -14.65833 -13.98534 -13.79922 -13.50659 -13.40566 -13.18641 -12.79239 -12.56203 -12.43392 -12.28352 -12.15116 -12.06292 -11.82456 -11.62240 -11.53714 -11.50390 -11.31508 -11.05579 -10.95495 -10.77090 -10.66706 -10.44984 -9.24887 -8.30030 -6.34290 1.34348 1.36935 1.48917 2.35503 2.88479 3.03477 3.05315 3.27550 3.64813 3.75601 3.85087 4.02767 4.13712 4.19051 4.20719 4.27588 4.33040 4.34747 4.49819 4.56066 4.59627 4.62589 4.69063 4.75126 4.83686 4.88260 4.91557 4.95946 4.98827 5.04114 5.07858 5.11305 5.18250 5.24053 5.33742 5.42086 5.53491 5.60906 5.62276 5.66460 6.15805 6.24976 6.29837 6.50934 6.74235 7.30374 8.87129 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.004284 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.434848 B = 6534.842061 C = 7496.873773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.073 3.927 12 N -0.681 5.681 13 C 0.126 3.874 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.179 4.179 18 C -0.127 4.127 19 H 0.079 0.921 20 C -0.123 4.123 21 C -0.151 4.151 22 C 0.056 3.944 23 O -0.400 6.400 24 C 0.068 3.932 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.343 0.657 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.055 0.945 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.051 -8.917 -3.314 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.127 4.127 11 C -0.056 4.056 12 N -0.312 5.312 13 C 0.016 3.984 14 H 0.086 0.914 15 C -0.166 4.166 16 C -0.203 4.203 17 C -0.216 4.216 18 C -0.147 4.147 19 H 0.097 0.903 20 C -0.161 4.161 21 C -0.189 4.189 22 C -0.020 4.020 23 O -0.319 6.319 24 C -0.009 4.009 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.919 -9.054 -2.666 25.714 hybrid contribution -0.621 1.254 -0.792 1.608 sum 23.298 -7.800 -3.458 24.811 Atomic orbital electron populations 1.70081 1.08392 1.28169 1.52761 1.26064 0.95633 1.03655 0.94086 0.85613 0.79472 0.78031 0.79246 1.19020 1.20967 1.16976 1.21524 0.92336 0.92992 1.50308 0.95342 1.19474 0.93712 0.95170 0.96323 1.21235 0.94259 0.96642 1.00533 1.21956 0.94325 0.89271 1.00077 1.60478 1.09087 1.14049 1.47557 1.20978 0.86911 0.97894 0.92607 0.91413 1.22492 0.99049 1.01975 0.93092 1.22847 0.99010 0.94966 1.03508 1.22804 1.03975 1.00479 0.94302 1.22211 0.97384 1.00149 0.94996 0.90305 1.21711 1.00562 0.98756 0.95060 1.22146 0.96482 1.02666 0.97617 1.22713 0.94590 0.93484 0.91219 1.87910 1.75035 1.50655 1.18341 1.22718 0.91441 1.01405 0.85292 0.92506 0.96392 0.96371 0.93567 0.93639 0.94788 0.91775 0.83753 0.86383 0.88670 0.89011 0.88341 0.90633 0.92201 0.91984 0.89964 0.91394 0.92689 0.87667 0.92712 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.45 5.44 30.59 0.17 -3.28 16 11 C 0.07 2.15 5.10 86.30 0.44 2.59 16 12 N -0.68 -16.76 4.27 -491.56 -2.10 -18.86 16 13 C 0.13 2.53 2.14 44.92 0.10 2.62 16 14 H 0.07 1.44 7.53 -2.39 -0.02 1.42 16 15 C -0.15 -2.77 5.51 -10.79 -0.06 -2.83 16 16 C -0.17 -3.52 9.85 30.60 0.30 -3.22 16 17 C -0.18 -3.73 10.19 30.59 0.31 -3.41 16 18 C -0.13 -2.26 1.77 -10.71 -0.02 -2.28 16 19 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 20 C -0.12 -2.28 4.27 30.72 0.13 -2.15 16 21 C -0.15 -2.43 6.13 30.69 0.19 -2.25 16 22 C 0.06 0.87 6.84 72.01 0.49 1.36 16 23 O -0.40 -7.75 10.76 -148.98 -1.60 -9.35 16 24 C 0.07 1.13 5.83 72.01 0.42 1.55 16 25 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 26 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 0.96 6.93 -2.39 -0.02 0.94 16 31 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.34 8.28 7.40 -89.70 -0.66 7.62 16 33 H 0.12 1.80 6.13 -2.39 -0.01 1.78 16 34 H 0.09 2.42 6.94 -2.38 -0.02 2.41 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.25 6.56 -2.39 -0.02 1.23 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 1.51 6.26 -2.39 -0.01 1.50 16 Total: -1.00 -65.92 344.03 2.01 -63.91 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.22 Total: 20.53 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.30 Total: -42.21 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.80 Total: -79.36 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.60 Total: -9.35 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -65.92 2.01 -63.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.957 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds