Wall clock time and date at job start Mon Mar 30 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47621 * 270.00520 * 3 2 1 5 5 H 1.48510 * 109.46664 * 30.00400 * 3 2 1 6 6 H 1.48495 * 109.47130 * 149.99915 * 3 2 1 7 7 C 1.37882 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99898 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47028 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46726 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99818 * 185.21216 * 12 11 10 14 14 H 1.09001 * 109.47274 * 347.83339 * 13 12 11 15 15 C 1.52995 * 109.47440 * 107.83578 * 13 12 11 16 16 C 1.53001 * 117.49781 * 6.30923 * 15 13 12 17 17 C 1.52997 * 60.00067 * 252.51066 * 16 15 13 18 18 C 1.52999 * 109.47011 * 227.83923 * 13 12 11 19 19 H 1.08997 * 109.52495 * 184.87433 * 18 13 12 20 20 C 1.53172 * 109.52562 * 64.68034 * 18 13 12 21 21 C 1.53177 * 109.03721 * 183.11519 * 20 18 13 22 22 C 1.53097 * 109.16615 * 56.98341 * 21 20 18 23 23 O 1.42901 * 109.41036 * 302.39467 * 22 21 20 24 24 C 1.42903 * 114.10321 * 61.15277 * 23 22 21 25 25 H 0.96998 * 120.00134 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47094 * 59.99683 * 9 7 2 27 27 H 1.08998 * 109.47546 * 299.99290 * 9 7 2 28 28 H 1.09000 * 109.47223 * 60.00025 * 10 9 7 29 29 H 1.09007 * 109.47294 * 299.99905 * 10 9 7 30 30 H 1.09008 * 109.46914 * 60.00330 * 11 10 9 31 31 H 1.08993 * 109.47063 * 300.00305 * 11 10 9 32 32 H 1.00900 * 110.99913 * 61.25694 * 12 11 10 33 33 H 1.09005 * 115.55190 * 152.01832 * 15 13 12 34 34 H 1.09001 * 117.49932 * 0.02562 * 16 15 13 35 35 H 1.09000 * 117.49697 * 145.02433 * 16 15 13 36 36 H 1.09002 * 117.50177 * 252.50829 * 17 16 15 37 37 H 1.09000 * 117.49960 * 107.48669 * 17 16 15 38 38 H 1.08993 * 109.54632 * 302.98262 * 20 18 13 39 39 H 1.09003 * 109.54440 * 63.25261 * 20 18 13 40 40 H 1.09003 * 109.52359 * 297.07683 * 21 20 18 41 41 H 1.09008 * 109.52332 * 176.88660 * 21 20 18 42 42 H 1.08995 * 109.48058 * 182.40822 * 22 21 20 43 43 H 1.08996 * 109.47628 * 62.37237 * 22 21 20 44 44 H 1.09004 * 109.48070 * 178.85611 * 24 23 22 45 45 H 1.09002 * 109.47477 * 58.82564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 7 6.0413 -4.0214 -0.0015 13 6 7.5045 -4.0623 0.1220 14 1 7.9103 -3.0623 -0.0314 15 6 7.8849 -4.5584 1.5183 16 6 6.7543 -5.0428 2.4282 17 6 7.4474 -3.7090 2.7133 18 6 8.0787 -5.0125 -0.9309 19 1 9.1544 -5.1106 -0.7850 20 6 7.7993 -4.4554 -2.3300 21 6 8.3092 -5.4519 -3.3756 22 6 7.6383 -6.8087 -3.1459 23 8 7.9122 -7.2550 -1.8163 24 6 7.4167 -6.3862 -0.7955 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6802 0.8889 27 1 3.8746 -0.6801 -0.8911 28 1 3.6580 -3.1505 -0.8907 29 1 3.6586 -3.1502 0.8893 30 1 5.9156 -2.1222 0.8874 31 1 5.9142 -2.1229 -0.8926 32 1 5.7340 -4.5139 -0.8268 33 1 8.8439 -5.0717 1.5899 34 1 5.7395 -5.0084 2.0319 35 1 6.9692 -5.8750 3.0986 36 1 8.1184 -3.6637 3.5712 37 1 6.8887 -2.7967 2.5046 38 1 6.7266 -4.3103 -2.4572 39 1 8.3145 -3.5026 -2.4528 40 1 9.3897 -5.5591 -3.2802 41 1 8.0649 -5.0892 -4.3741 42 1 8.0292 -7.5331 -3.8603 43 1 6.5613 -6.7092 -3.2813 44 1 7.6481 -6.8065 0.1833 45 1 6.3369 -6.2813 -0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723967549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:14 Heat of formation + Delta-G solvation = -42.144901 kcal Electronic energy + Delta-G solvation = -21184.243555 eV Core-core repulsion = 18201.545430 eV Total energy + Delta-G solvation = -2982.698125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15730 -37.97784 -35.37752 -34.26377 -32.94303 -31.98603 -30.48061 -27.22720 -25.53449 -25.18791 -22.91948 -22.45949 -21.86565 -20.35221 -20.13562 -19.29330 -16.82879 -16.65027 -16.25525 -15.90784 -15.14872 -14.92350 -14.66200 -14.45196 -14.19753 -13.92316 -13.57628 -13.02957 -12.82619 -12.70207 -12.23876 -12.15661 -11.82444 -11.53204 -11.48807 -11.29941 -11.18474 -10.98875 -10.85153 -10.75926 -10.43241 -10.04465 -9.92016 -9.86761 -9.74545 -9.56643 -9.48553 -9.16593 -8.53142 -8.23660 -6.03431 -4.01114 3.30078 3.37711 3.41365 3.72327 3.90008 4.32457 4.45548 4.45929 4.52759 4.61560 4.77339 4.92006 5.03580 5.10845 5.18465 5.25180 5.30492 5.31791 5.42836 5.52700 5.55358 5.58784 5.61634 5.65519 5.75344 5.81732 5.84421 5.88830 5.96821 6.07033 6.11354 6.16578 6.32363 6.54384 6.58267 6.62654 6.91540 7.04120 7.21227 7.35554 7.43107 7.55073 7.81150 8.55799 9.02259 9.59303 11.10198 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.004256 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.899952 B = 6576.677061 C = 7243.173211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.056 3.944 12 N -0.682 5.682 13 C 0.121 3.879 14 H 0.060 0.940 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.181 4.181 18 C -0.128 4.128 19 H 0.082 0.918 20 C -0.124 4.124 21 C -0.153 4.153 22 C 0.058 3.942 23 O -0.386 6.386 24 C 0.070 3.930 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.008 0.992 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.338 0.662 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.547 -11.513 -2.686 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.136 4.136 11 C -0.072 4.072 12 N -0.315 5.315 13 C 0.011 3.989 14 H 0.078 0.922 15 C -0.172 4.172 16 C -0.195 4.195 17 C -0.218 4.218 18 C -0.147 4.147 19 H 0.100 0.900 20 C -0.161 4.161 21 C -0.191 4.191 22 C -0.019 4.019 23 O -0.305 6.305 24 C -0.007 4.007 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.159 0.841 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.373 -11.649 -1.982 22.692 hybrid contribution 0.538 1.647 -0.965 1.984 sum 19.910 -10.002 -2.947 22.475 Atomic orbital electron populations 1.69917 1.06297 1.26824 1.51337 1.25039 0.94716 0.99139 0.94646 0.86776 0.80365 0.83704 0.78402 1.20410 1.21394 1.19076 1.21148 0.89531 0.94432 1.50527 0.91045 1.19537 0.97154 0.92349 0.95999 1.21423 0.91125 0.99518 1.01497 1.22275 0.97644 0.87604 0.99719 1.60619 1.08778 1.16238 1.45833 1.20955 0.88429 0.97271 0.92255 0.92188 1.22326 0.98796 1.05032 0.91004 1.22929 0.99348 0.96156 1.01050 1.22888 1.04044 0.96248 0.98622 1.22108 1.01544 0.96401 0.94674 0.89993 1.21711 1.01650 0.98722 0.94066 1.22164 1.01333 0.96124 0.99480 1.22573 0.99214 0.95522 0.84566 1.87926 1.79998 1.48015 1.14515 1.22612 0.97714 0.88991 0.91390 0.92781 0.96707 0.97415 0.93197 0.91945 0.91474 0.95867 0.84106 0.88484 0.86386 0.90313 0.89856 0.88838 0.91561 0.91469 0.91201 0.90893 0.89141 0.93050 0.88426 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.89 5.46 -26.73 -0.15 -2.04 16 11 C 0.06 0.87 5.36 -3.82 -0.02 0.85 16 12 N -0.68 -8.62 4.15 -106.72 -0.44 -9.06 16 13 C 0.12 1.33 2.21 -67.71 -0.15 1.18 16 14 H 0.06 0.71 7.59 -51.93 -0.39 0.32 16 15 C -0.15 -1.64 4.76 -90.62 -0.43 -2.07 16 16 C -0.16 -1.83 9.84 -26.73 -0.26 -2.09 16 17 C -0.18 -2.12 10.20 -26.73 -0.27 -2.39 16 18 C -0.13 -1.24 2.11 -90.48 -0.19 -1.44 16 19 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.12 -1.17 5.19 -26.55 -0.14 -1.31 16 21 C -0.15 -1.29 6.14 -26.59 -0.16 -1.45 16 22 C 0.06 0.52 6.84 37.21 0.25 0.78 16 23 O -0.39 -4.34 10.76 -35.23 -0.38 -4.72 16 24 C 0.07 0.72 5.70 37.21 0.21 0.93 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 26 H 0.01 0.35 7.20 -51.92 -0.37 -0.02 16 27 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.06 6.64 -51.92 -0.34 0.72 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.34 4.16 5.27 -39.29 -0.21 3.95 16 33 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.12 1.58 6.92 -51.93 -0.36 1.22 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.24 6.65 -51.93 -0.35 0.89 16 38 H 0.07 0.68 6.72 -51.93 -0.35 0.33 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 1.00 7.47 -51.93 -0.39 0.61 16 45 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -30.11 342.56 -9.56 -39.67 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.15 Total: 1.98 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.85 Total: -22.87 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.33 Total: -36.44 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.38 Total: -4.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.11 -9.56 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds