Wall clock time and date at job start Mon Mar 30 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47621 * 270.00520 * 3 2 1 5 5 H 1.48510 * 109.46664 * 30.00400 * 3 2 1 6 6 H 1.48495 * 109.47130 * 149.99915 * 3 2 1 7 7 C 1.37882 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99898 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47028 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46726 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99818 * 185.21216 * 12 11 10 14 14 H 1.09001 * 109.47274 * 347.83339 * 13 12 11 15 15 C 1.52995 * 109.47440 * 107.83578 * 13 12 11 16 16 C 1.53001 * 117.49781 * 6.30923 * 15 13 12 17 17 C 1.52997 * 60.00067 * 252.51066 * 16 15 13 18 18 C 1.52999 * 109.47011 * 227.83923 * 13 12 11 19 19 H 1.08997 * 109.52495 * 184.87433 * 18 13 12 20 20 C 1.53172 * 109.52562 * 64.68034 * 18 13 12 21 21 C 1.53177 * 109.03721 * 183.11519 * 20 18 13 22 22 C 1.53097 * 109.16615 * 56.98341 * 21 20 18 23 23 O 1.42901 * 109.41036 * 302.39467 * 22 21 20 24 24 C 1.42903 * 114.10321 * 61.15277 * 23 22 21 25 25 H 0.96998 * 120.00134 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47094 * 59.99683 * 9 7 2 27 27 H 1.08998 * 109.47546 * 299.99290 * 9 7 2 28 28 H 1.09000 * 109.47223 * 60.00025 * 10 9 7 29 29 H 1.09007 * 109.47294 * 299.99905 * 10 9 7 30 30 H 1.09008 * 109.46914 * 60.00330 * 11 10 9 31 31 H 1.08993 * 109.47063 * 300.00305 * 11 10 9 32 32 H 1.00900 * 110.99913 * 61.25694 * 12 11 10 33 33 H 1.09005 * 115.55190 * 152.01832 * 15 13 12 34 34 H 1.09001 * 117.49932 * 0.02562 * 16 15 13 35 35 H 1.09000 * 117.49697 * 145.02433 * 16 15 13 36 36 H 1.09002 * 117.50177 * 252.50829 * 17 16 15 37 37 H 1.09000 * 117.49960 * 107.48669 * 17 16 15 38 38 H 1.08993 * 109.54632 * 302.98262 * 20 18 13 39 39 H 1.09003 * 109.54440 * 63.25261 * 20 18 13 40 40 H 1.09003 * 109.52359 * 297.07683 * 21 20 18 41 41 H 1.09008 * 109.52332 * 176.88660 * 21 20 18 42 42 H 1.08995 * 109.48058 * 182.40822 * 22 21 20 43 43 H 1.08996 * 109.47628 * 62.37237 * 22 21 20 44 44 H 1.09004 * 109.48070 * 178.85611 * 24 23 22 45 45 H 1.09002 * 109.47477 * 58.82564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 7 6.0413 -4.0214 -0.0015 13 6 7.5045 -4.0623 0.1220 14 1 7.9103 -3.0623 -0.0314 15 6 7.8849 -4.5584 1.5183 16 6 6.7543 -5.0428 2.4282 17 6 7.4474 -3.7090 2.7133 18 6 8.0787 -5.0125 -0.9309 19 1 9.1544 -5.1106 -0.7850 20 6 7.7993 -4.4554 -2.3300 21 6 8.3092 -5.4519 -3.3756 22 6 7.6383 -6.8087 -3.1459 23 8 7.9122 -7.2550 -1.8163 24 6 7.4167 -6.3862 -0.7955 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6802 0.8889 27 1 3.8746 -0.6801 -0.8911 28 1 3.6580 -3.1505 -0.8907 29 1 3.6586 -3.1502 0.8893 30 1 5.9156 -2.1222 0.8874 31 1 5.9142 -2.1229 -0.8926 32 1 5.7340 -4.5139 -0.8268 33 1 8.8439 -5.0717 1.5899 34 1 5.7395 -5.0084 2.0319 35 1 6.9692 -5.8750 3.0986 36 1 8.1184 -3.6637 3.5712 37 1 6.8887 -2.7967 2.5046 38 1 6.7266 -4.3103 -2.4572 39 1 8.3145 -3.5026 -2.4528 40 1 9.3897 -5.5591 -3.2802 41 1 8.0649 -5.0892 -4.3741 42 1 8.0292 -7.5331 -3.8603 43 1 6.5613 -6.7092 -3.2813 44 1 7.6481 -6.8065 0.1833 45 1 6.3369 -6.2813 -0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723967549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:14 Heat of formation + Delta-G solvation = -59.547935 kcal Electronic energy + Delta-G solvation = -21184.998207 eV Core-core repulsion = 18201.545430 eV Total energy + Delta-G solvation = -2983.452777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99791 -38.87800 -36.68731 -35.49578 -34.47972 -33.22786 -31.84019 -28.62091 -26.82303 -25.97657 -23.96475 -23.67204 -22.96444 -21.86412 -21.02620 -20.27638 -18.91714 -17.58952 -17.16030 -16.80326 -16.36643 -15.95714 -15.84738 -15.77403 -15.36406 -14.98433 -14.78691 -14.51937 -14.03450 -13.86805 -13.56971 -13.38742 -12.96760 -12.89481 -12.63694 -12.35976 -12.31607 -12.10758 -12.07081 -11.82047 -11.66597 -11.49910 -11.46617 -11.31277 -11.09070 -10.88720 -10.76848 -10.72210 -10.30855 -9.28648 -8.29806 -6.33967 1.34520 1.37002 1.48999 2.35645 2.96668 2.97159 3.05549 3.31413 3.66077 3.75735 3.85359 4.02287 4.13209 4.18422 4.21866 4.29414 4.34095 4.35914 4.49553 4.55868 4.63923 4.67942 4.72219 4.78521 4.85558 4.88864 4.91341 4.97615 5.00278 5.06053 5.07905 5.12352 5.18174 5.25740 5.35980 5.40987 5.53992 5.61525 5.64932 5.66811 6.12753 6.28700 6.30149 6.49579 6.74550 7.30698 8.87317 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.004256 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.899952 B = 6576.677061 C = 7243.173211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.088 4.088 11 C 0.072 3.928 12 N -0.681 5.681 13 C 0.124 3.876 14 H 0.059 0.941 15 C -0.142 4.142 16 C -0.163 4.163 17 C -0.187 4.187 18 C -0.117 4.117 19 H 0.090 0.910 20 C -0.125 4.125 21 C -0.148 4.148 22 C 0.052 3.948 23 O -0.402 6.402 24 C 0.072 3.928 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.342 0.658 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.098 0.902 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.372 -11.024 -3.087 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.057 4.057 12 N -0.314 5.314 13 C 0.014 3.986 14 H 0.077 0.923 15 C -0.161 4.161 16 C -0.200 4.200 17 C -0.224 4.224 18 C -0.137 4.137 19 H 0.108 0.892 20 C -0.162 4.162 21 C -0.186 4.186 22 C -0.025 4.025 23 O -0.321 6.321 24 C -0.005 4.005 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.215 -11.182 -2.387 24.985 hybrid contribution -0.425 1.387 -0.845 1.679 sum 21.790 -9.795 -3.233 24.108 Atomic orbital electron populations 1.70077 1.08375 1.28161 1.52786 1.26056 0.95623 1.03625 0.94106 0.85618 0.79468 0.78084 0.79221 1.19060 1.20979 1.17012 1.21517 0.92306 0.92999 1.50258 0.95281 1.19480 0.93738 0.95202 0.96299 1.21232 0.94161 0.96614 1.00584 1.21969 0.94434 0.89273 1.00014 1.60534 1.10212 1.14505 1.46163 1.20967 0.87014 0.97620 0.92980 0.92347 1.22387 0.99076 1.04230 0.90368 1.22865 0.98598 0.96708 1.01815 1.22893 1.04318 0.95443 0.99740 1.22005 1.01689 0.95561 0.94412 0.89211 1.21718 1.01121 0.99211 0.94193 1.22130 1.01382 0.95340 0.99716 1.22744 0.99377 0.96408 0.83931 1.87905 1.80132 1.48616 1.15436 1.22572 0.97223 0.89273 0.91420 0.92513 0.96386 0.96451 0.93699 0.93382 0.91521 0.95156 0.83751 0.86759 0.88466 0.89059 0.88496 0.90587 0.92521 0.91149 0.90810 0.89731 0.87647 0.93248 0.88383 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -31.34 9.66 25.60 0.25 -31.10 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.09 -3.40 5.46 30.60 0.17 -3.24 16 11 C 0.07 2.14 5.36 86.30 0.46 2.60 16 12 N -0.68 -16.52 4.15 -491.56 -2.04 -18.56 16 13 C 0.12 2.49 2.21 44.91 0.10 2.59 16 14 H 0.06 1.24 7.59 -2.39 -0.02 1.22 16 15 C -0.14 -2.75 4.76 -10.79 -0.05 -2.80 16 16 C -0.16 -3.58 9.84 30.59 0.30 -3.27 16 17 C -0.19 -4.08 10.20 30.59 0.31 -3.77 16 18 C -0.12 -2.04 2.11 -10.70 -0.02 -2.06 16 19 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.12 -2.10 5.19 30.71 0.16 -1.94 16 21 C -0.15 -2.16 6.14 30.69 0.19 -1.97 16 22 C 0.05 0.84 6.84 72.01 0.49 1.34 16 23 O -0.40 -8.41 10.76 -148.98 -1.60 -10.01 16 24 C 0.07 1.38 5.70 72.01 0.41 1.79 16 25 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 27 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 2.01 6.64 -2.38 -0.02 1.99 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.34 8.09 5.27 -89.69 -0.47 7.62 16 33 H 0.11 1.88 8.10 -2.38 -0.02 1.86 16 34 H 0.10 2.58 6.92 -2.39 -0.02 2.57 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.94 6.65 -2.39 -0.02 1.92 16 38 H 0.06 1.07 6.72 -2.39 -0.02 1.05 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 1.85 7.47 -2.39 -0.02 1.84 16 45 H 0.05 1.04 6.52 -2.39 -0.02 1.03 16 Total: -1.00 -65.48 342.56 2.30 -63.17 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.41 Total: 20.86 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 3.35 Total: -41.55 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.74 Total: -79.00 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.60 Total: -10.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -65.48 2.30 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds