Wall clock time and date at job start Mon Mar 30 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00237 * 2 1 4 4 H 1.48491 * 109.47125 * 90.00108 * 3 2 1 5 5 H 1.48495 * 109.46871 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.46940 * 329.99959 * 3 2 1 7 7 C 1.37885 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46991 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46865 * 179.97438 * 11 10 9 13 13 C 1.46896 * 110.99912 * 176.75914 * 12 11 10 14 14 H 1.09007 * 109.47280 * 30.93444 * 13 12 11 15 15 C 1.52996 * 109.47795 * 270.93286 * 13 12 11 16 16 C 1.53006 * 117.49434 * 10.15313 * 15 13 12 17 17 C 1.53000 * 117.49526 * 301.53337 * 15 13 12 18 18 C 1.53003 * 109.47157 * 150.93125 * 13 12 11 19 19 H 1.08999 * 109.51859 * 59.87406 * 18 13 12 20 20 C 1.53177 * 109.51913 * 299.68734 * 18 13 12 21 21 C 1.53184 * 109.03640 * 183.11124 * 20 18 13 22 22 C 1.53090 * 109.15845 * 56.98320 * 21 20 18 23 23 O 1.42903 * 109.41551 * 302.38958 * 22 21 20 24 24 C 1.42903 * 114.09732 * 61.16315 * 23 22 21 25 25 H 0.97002 * 120.00145 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46910 * 300.00061 * 9 7 2 27 27 H 1.08997 * 109.47367 * 60.00126 * 9 7 2 28 28 H 1.08998 * 109.46515 * 299.99604 * 10 9 7 29 29 H 1.08997 * 109.47222 * 59.99639 * 10 9 7 30 30 H 1.09004 * 109.46911 * 299.99584 * 11 10 9 31 31 H 1.08997 * 109.47497 * 59.99728 * 11 10 9 32 32 H 1.00902 * 110.99868 * 52.81276 * 12 11 10 33 33 H 1.08998 * 115.55842 * 155.85834 * 15 13 12 34 34 H 1.08994 * 117.50066 * 359.97438 * 16 15 13 35 35 H 1.08994 * 117.49864 * 145.02648 * 16 15 13 36 36 H 1.09003 * 117.49805 * 214.97882 * 17 15 13 37 37 H 1.09000 * 117.50202 * 359.97438 * 17 15 13 38 38 H 1.09000 * 109.55116 * 302.97992 * 20 18 13 39 39 H 1.08998 * 109.54391 * 63.24687 * 20 18 13 40 40 H 1.09000 * 109.52053 * 297.08023 * 21 20 18 41 41 H 1.08999 * 109.57605 * 176.91974 * 21 20 18 42 42 H 1.08999 * 109.47550 * 182.41105 * 22 21 20 43 43 H 1.08999 * 109.49530 * 62.37951 * 22 21 20 44 44 H 1.09002 * 109.48266 * 178.86143 * 24 23 22 45 45 H 1.09001 * 109.48118 * 58.82523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5466 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7361 -7.3936 0.0751 14 1 0.7660 -7.3113 -0.4152 15 6 1.5348 -7.7781 1.5422 16 6 1.8434 -6.7161 2.5995 17 6 2.7840 -7.9088 2.4159 18 6 2.5711 -8.4684 -0.6239 19 1 3.5422 -8.5499 -0.1356 20 6 2.7666 -8.0885 -2.0948 21 6 3.5365 -9.2082 -2.8020 22 6 2.7720 -10.5245 -2.6385 23 8 2.5977 -10.8030 -1.2477 24 6 1.8440 -9.8133 -0.5445 25 1 -0.4850 -0.8400 -0.0004 26 1 0.6246 -2.5571 0.8897 27 1 0.6239 -2.5568 -0.8903 28 1 2.8717 -3.6044 -0.8906 29 1 2.8718 -3.6044 0.8894 30 1 0.8532 -5.0451 0.8887 31 1 0.8537 -5.0446 -0.8913 32 1 3.1025 -6.0090 0.7487 33 1 0.7085 -8.4607 1.7404 34 1 2.1901 -5.7437 2.2499 35 1 1.2200 -6.6998 3.4934 36 1 2.7793 -8.6772 3.1890 37 1 3.7492 -7.7212 1.9454 38 1 1.7944 -7.9580 -2.5702 39 1 3.3330 -7.1595 -2.1594 40 1 4.5275 -9.3050 -2.3587 41 1 3.6329 -8.9722 -3.8618 42 1 3.3367 -11.3328 -3.1031 43 1 1.7965 -10.4405 -3.1174 44 1 1.7401 -10.1092 0.4994 45 1 0.8563 -9.7198 -0.9960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723967554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:19 Heat of formation + Delta-G solvation = -50.391221 kcal Electronic energy + Delta-G solvation = -20977.709464 eV Core-core repulsion = 17994.653751 eV Total energy + Delta-G solvation = -2983.055712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11238 -38.43805 -35.18971 -34.17272 -33.11030 -31.92686 -30.32858 -26.78518 -25.40226 -24.44793 -23.17201 -22.51170 -22.28780 -20.61703 -20.24911 -19.29880 -16.89980 -16.57500 -16.32155 -16.26420 -15.23138 -14.86815 -14.55294 -14.20304 -13.91134 -13.78761 -13.70161 -13.02900 -12.69662 -12.53641 -12.39765 -12.06621 -11.83163 -11.47277 -11.42150 -11.34139 -11.08148 -10.83348 -10.72140 -10.66788 -10.39777 -10.33434 -10.11852 -9.97216 -9.84820 -9.76488 -9.47854 -8.51270 -8.30619 -8.23140 -6.34224 -4.02787 3.44426 3.48395 3.64042 3.64180 3.72417 4.21376 4.52578 4.57149 4.68869 4.74193 4.82284 4.84479 4.90712 5.04055 5.08349 5.17796 5.32680 5.39365 5.43100 5.50638 5.54592 5.61100 5.63754 5.71121 5.79283 5.80182 5.86181 5.92347 5.97132 6.01264 6.01519 6.21000 6.28479 6.34926 6.58709 6.65103 6.97153 7.02968 7.26808 7.44165 7.52698 7.59512 8.25260 8.49445 8.91248 9.69481 11.06518 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.003574 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.808537 B = 7832.320032 C = 8452.873144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.600 4.600 8 H 0.048 0.952 9 C 0.010 3.990 10 C -0.101 4.101 11 C 0.056 3.944 12 N -0.682 5.682 13 C 0.122 3.878 14 H 0.079 0.921 15 C -0.183 4.183 16 C -0.186 4.186 17 C -0.176 4.176 18 C -0.102 4.102 19 H 0.078 0.922 20 C -0.109 4.109 21 C -0.157 4.157 22 C 0.059 3.941 23 O -0.385 6.385 24 C 0.066 3.934 25 H 0.268 0.732 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.339 0.661 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -21.323 -0.727 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.139 4.139 11 C -0.072 4.072 12 N -0.314 5.314 13 C 0.011 3.989 14 H 0.097 0.903 15 C -0.203 4.203 16 C -0.223 4.223 17 C -0.213 4.213 18 C -0.121 4.121 19 H 0.096 0.904 20 C -0.147 4.147 21 C -0.195 4.195 22 C -0.018 4.018 23 O -0.303 6.303 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.517 -19.841 -1.340 20.393 hybrid contribution -0.273 -1.406 0.900 1.691 sum 4.243 -21.247 -0.441 21.671 Atomic orbital electron populations 1.70750 1.06900 1.30568 1.46948 1.25861 0.96573 1.02761 0.93853 0.83513 0.74695 0.75109 0.76708 1.21507 1.21470 1.21006 1.22088 0.94307 0.92046 1.55399 0.93331 1.19182 0.94625 0.93184 0.95787 1.21495 0.98896 0.92661 1.00807 1.22210 0.94354 0.90599 1.00035 1.60659 1.17838 1.00913 1.51973 1.21057 0.97028 0.89591 0.91252 0.90279 1.23102 1.00051 1.03326 0.93844 1.23183 1.03647 0.94857 1.00598 1.22924 0.94802 1.00964 1.02639 1.21686 1.00046 0.93750 0.96646 0.90364 1.21516 1.00528 0.98752 0.93854 1.22220 1.00223 0.95803 1.01223 1.22581 0.99237 0.97340 0.82599 1.87916 1.74955 1.46253 1.21203 1.22622 0.93469 0.87948 0.97037 0.92136 0.97758 0.97525 0.92458 0.93646 0.95243 0.91641 0.84080 0.87912 0.87924 0.88801 0.88936 0.88619 0.92453 0.89774 0.91273 0.91114 0.89313 0.93429 0.88947 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.46 13.65 55.43 0.76 -27.71 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.60 -17.41 9.11 -34.44 -0.31 -17.72 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.01 0.25 4.28 -27.88 -0.12 0.13 16 10 C -0.10 -2.08 5.38 -26.73 -0.14 -2.22 16 11 C 0.06 0.95 4.68 -3.82 -0.02 0.93 16 12 N -0.68 -9.38 5.41 -106.72 -0.58 -9.96 16 13 C 0.12 1.41 2.03 -67.72 -0.14 1.27 16 14 H 0.08 0.97 7.78 -51.92 -0.40 0.57 16 15 C -0.18 -1.94 4.66 -90.62 -0.42 -2.36 16 16 C -0.19 -2.14 8.87 -26.73 -0.24 -2.38 16 17 C -0.18 -1.76 9.34 -26.73 -0.25 -2.01 16 18 C -0.10 -1.08 2.01 -90.48 -0.18 -1.27 16 19 H 0.08 0.89 7.39 -51.93 -0.38 0.51 16 20 C -0.11 -1.19 5.11 -26.54 -0.14 -1.33 16 21 C -0.16 -1.48 6.14 -26.59 -0.16 -1.64 16 22 C 0.06 0.55 6.84 37.20 0.25 0.80 16 23 O -0.38 -4.35 10.77 -35.23 -0.38 -4.73 16 24 C 0.07 0.67 5.84 37.20 0.22 0.89 16 25 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 26 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.50 6.80 -51.93 -0.35 0.15 16 31 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 32 H 0.34 4.59 5.78 -39.29 -0.23 4.36 16 33 H 0.10 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.10 1.37 5.15 -51.93 -0.27 1.10 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.97 7.30 -51.93 -0.38 0.59 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.06 7.73 -51.93 -0.40 0.66 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.86 7.23 -51.93 -0.38 0.49 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -30.60 344.52 -10.03 -40.62 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.19 Total: 2.59 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -1.75 Total: -26.65 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.18 Total: -37.66 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.38 Total: -4.73 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.60 -10.03 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.767 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds