Wall clock time and date at job start Mon Mar 30 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00237 * 2 1 4 4 H 1.48491 * 109.47125 * 90.00108 * 3 2 1 5 5 H 1.48495 * 109.46871 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.46940 * 329.99959 * 3 2 1 7 7 C 1.37885 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46991 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46865 * 179.97438 * 11 10 9 13 13 C 1.46896 * 110.99912 * 176.75914 * 12 11 10 14 14 H 1.09007 * 109.47280 * 30.93444 * 13 12 11 15 15 C 1.52996 * 109.47795 * 270.93286 * 13 12 11 16 16 C 1.53006 * 117.49434 * 10.15313 * 15 13 12 17 17 C 1.53000 * 117.49526 * 301.53337 * 15 13 12 18 18 C 1.53003 * 109.47157 * 150.93125 * 13 12 11 19 19 H 1.08999 * 109.51859 * 59.87406 * 18 13 12 20 20 C 1.53177 * 109.51913 * 299.68734 * 18 13 12 21 21 C 1.53184 * 109.03640 * 183.11124 * 20 18 13 22 22 C 1.53090 * 109.15845 * 56.98320 * 21 20 18 23 23 O 1.42903 * 109.41551 * 302.38958 * 22 21 20 24 24 C 1.42903 * 114.09732 * 61.16315 * 23 22 21 25 25 H 0.97002 * 120.00145 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46910 * 300.00061 * 9 7 2 27 27 H 1.08997 * 109.47367 * 60.00126 * 9 7 2 28 28 H 1.08998 * 109.46515 * 299.99604 * 10 9 7 29 29 H 1.08997 * 109.47222 * 59.99639 * 10 9 7 30 30 H 1.09004 * 109.46911 * 299.99584 * 11 10 9 31 31 H 1.08997 * 109.47497 * 59.99728 * 11 10 9 32 32 H 1.00902 * 110.99868 * 52.81276 * 12 11 10 33 33 H 1.08998 * 115.55842 * 155.85834 * 15 13 12 34 34 H 1.08994 * 117.50066 * 359.97438 * 16 15 13 35 35 H 1.08994 * 117.49864 * 145.02648 * 16 15 13 36 36 H 1.09003 * 117.49805 * 214.97882 * 17 15 13 37 37 H 1.09000 * 117.50202 * 359.97438 * 17 15 13 38 38 H 1.09000 * 109.55116 * 302.97992 * 20 18 13 39 39 H 1.08998 * 109.54391 * 63.24687 * 20 18 13 40 40 H 1.09000 * 109.52053 * 297.08023 * 21 20 18 41 41 H 1.08999 * 109.57605 * 176.91974 * 21 20 18 42 42 H 1.08999 * 109.47550 * 182.41105 * 22 21 20 43 43 H 1.08999 * 109.49530 * 62.37951 * 22 21 20 44 44 H 1.09002 * 109.48266 * 178.86143 * 24 23 22 45 45 H 1.09001 * 109.48118 * 58.82523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5466 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7361 -7.3936 0.0751 14 1 0.7660 -7.3113 -0.4152 15 6 1.5348 -7.7781 1.5422 16 6 1.8434 -6.7161 2.5995 17 6 2.7840 -7.9088 2.4159 18 6 2.5711 -8.4684 -0.6239 19 1 3.5422 -8.5499 -0.1356 20 6 2.7666 -8.0885 -2.0948 21 6 3.5365 -9.2082 -2.8020 22 6 2.7720 -10.5245 -2.6385 23 8 2.5977 -10.8030 -1.2477 24 6 1.8440 -9.8133 -0.5445 25 1 -0.4850 -0.8400 -0.0004 26 1 0.6246 -2.5571 0.8897 27 1 0.6239 -2.5568 -0.8903 28 1 2.8717 -3.6044 -0.8906 29 1 2.8718 -3.6044 0.8894 30 1 0.8532 -5.0451 0.8887 31 1 0.8537 -5.0446 -0.8913 32 1 3.1025 -6.0090 0.7487 33 1 0.7085 -8.4607 1.7404 34 1 2.1901 -5.7437 2.2499 35 1 1.2200 -6.6998 3.4934 36 1 2.7793 -8.6772 3.1890 37 1 3.7492 -7.7212 1.9454 38 1 1.7944 -7.9580 -2.5702 39 1 3.3330 -7.1595 -2.1594 40 1 4.5275 -9.3050 -2.3587 41 1 3.6329 -8.9722 -3.8618 42 1 3.3367 -11.3328 -3.1031 43 1 1.7965 -10.4405 -3.1174 44 1 1.7401 -10.1092 0.4994 45 1 0.8563 -9.7198 -0.9960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723967554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:19 Heat of formation + Delta-G solvation = -68.147028 kcal Electronic energy + Delta-G solvation = -20978.479413 eV Core-core repulsion = 17994.653751 eV Total energy + Delta-G solvation = -2983.825662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01407 -39.33630 -36.80680 -35.34835 -34.64160 -32.95582 -31.84024 -28.20071 -26.63368 -25.63994 -24.23947 -23.95372 -23.25169 -22.25786 -21.13186 -20.27953 -18.92834 -17.78416 -17.14439 -17.11195 -16.21397 -15.85140 -15.76524 -15.65542 -15.33721 -15.11365 -14.97317 -14.58447 -13.84931 -13.66012 -13.52681 -13.37024 -13.12373 -12.86410 -12.62198 -12.42604 -12.24626 -12.18930 -11.97628 -11.95936 -11.75224 -11.73389 -11.54613 -11.22684 -11.17502 -10.85066 -10.66187 -10.55845 -10.32707 -9.39537 -8.70754 -6.40984 1.51176 1.60695 1.78708 2.55359 2.78854 2.92112 3.14249 3.16000 3.63723 3.83552 3.85056 4.01306 4.03303 4.09285 4.10660 4.18401 4.23919 4.33176 4.39461 4.56045 4.56478 4.60719 4.67607 4.71119 4.77664 4.82307 4.86215 4.91269 4.96511 5.01372 5.03619 5.08159 5.13705 5.17577 5.20183 5.39483 5.44028 5.46008 5.51962 5.96272 6.07880 6.17312 6.28177 6.40538 6.57022 7.41062 8.70206 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.003574 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.808537 B = 7832.320032 C = 8452.873144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.619 4.619 8 H 0.049 0.951 9 C 0.011 3.989 10 C -0.086 4.086 11 C 0.074 3.926 12 N -0.680 5.680 13 C 0.123 3.877 14 H 0.074 0.926 15 C -0.181 4.181 16 C -0.201 4.201 17 C -0.161 4.161 18 C -0.092 4.092 19 H 0.073 0.927 20 C -0.110 4.110 21 C -0.152 4.152 22 C 0.056 3.944 23 O -0.400 6.400 24 C 0.069 3.931 25 H 0.255 0.745 26 H -0.013 1.013 27 H -0.012 1.012 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.342 0.658 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -22.474 -0.602 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.657 4.657 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.124 4.124 11 C -0.055 4.055 12 N -0.311 5.311 13 C 0.013 3.987 14 H 0.092 0.908 15 C -0.200 4.200 16 C -0.239 4.239 17 C -0.198 4.198 18 C -0.112 4.112 19 H 0.091 0.909 20 C -0.147 4.147 21 C -0.190 4.190 22 C -0.021 4.021 23 O -0.319 6.319 24 C -0.008 4.008 25 H 0.064 0.936 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.120 0.880 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.526 -21.030 -1.213 21.778 hybrid contribution -0.589 -1.088 0.843 1.497 sum 4.936 -22.119 -0.370 22.666 Atomic orbital electron populations 1.70888 1.07944 1.29844 1.48910 1.27486 0.96642 1.06964 0.92695 0.82895 0.74170 0.70917 0.77865 1.19679 1.19401 1.20705 1.22531 0.94665 0.93542 1.54983 0.93252 1.19122 0.95069 0.94516 0.93963 1.21257 0.97741 0.92882 1.00515 1.21857 0.94113 0.89840 0.99664 1.60586 1.17306 1.00980 1.52268 1.21071 0.96730 0.88584 0.92310 0.90804 1.23095 1.01094 1.03089 0.92741 1.23137 1.05008 0.94462 1.01251 1.22970 0.94265 1.00136 1.02421 1.21581 0.99609 0.93829 0.96142 0.90892 1.21492 1.00278 0.98584 0.94390 1.22185 0.99750 0.95420 1.01663 1.22726 0.99831 0.97612 0.81881 1.87900 1.75160 1.46636 1.22207 1.22635 0.93392 0.87147 0.97664 0.93555 0.99432 0.99402 0.93078 0.93416 0.95416 0.92240 0.83748 0.86389 0.90028 0.88379 0.87232 0.88760 0.92771 0.91670 0.91642 0.90010 0.87673 0.92764 0.88009 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.65 21.45 0.29 -59.05 16 2 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16 3 Si 1.12 51.15 29.90 68.60 2.05 53.20 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.62 -36.36 9.11 25.60 0.23 -36.12 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.01 0.58 4.28 29.85 0.13 0.71 16 10 C -0.09 -3.60 5.38 30.60 0.16 -3.44 16 11 C 0.07 2.51 4.68 86.30 0.40 2.91 16 12 N -0.68 -18.40 5.41 -491.57 -2.66 -21.06 16 13 C 0.12 2.72 2.03 44.92 0.09 2.81 16 14 H 0.07 1.74 7.78 -2.38 -0.02 1.72 16 15 C -0.18 -3.51 4.66 -10.79 -0.05 -3.56 16 16 C -0.20 -4.45 8.87 30.60 0.27 -4.18 16 17 C -0.16 -2.89 9.34 30.60 0.29 -2.61 16 18 C -0.09 -1.84 2.01 -10.70 -0.02 -1.86 16 19 H 0.07 1.56 7.39 -2.39 -0.02 1.54 16 20 C -0.11 -2.30 5.11 30.71 0.16 -2.15 16 21 C -0.15 -2.65 6.14 30.69 0.19 -2.46 16 22 C 0.06 0.91 6.84 72.01 0.49 1.41 16 23 O -0.40 -8.21 10.77 -148.98 -1.60 -9.81 16 24 C 0.07 1.24 5.84 72.01 0.42 1.66 16 25 H 0.26 16.32 7.22 -92.71 -0.67 15.65 16 26 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 27 H -0.01 -0.70 8.01 -2.39 -0.02 -0.72 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 0.95 6.80 -2.39 -0.02 0.93 16 31 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 32 H 0.34 9.07 5.78 -89.69 -0.52 8.55 16 33 H 0.12 1.99 8.04 -2.39 -0.02 1.97 16 34 H 0.08 2.17 5.15 -2.39 -0.01 2.15 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.74 7.30 -2.39 -0.02 1.73 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.61 7.73 -2.39 -0.02 1.60 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 1.64 7.23 -2.39 -0.02 1.62 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.67 344.52 1.83 -63.84 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.52 Total: 21.70 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 3.23 Total: -48.83 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.36 Total: -80.10 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.60 Total: -9.81 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -65.67 1.83 -63.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723967554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.308 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds