Wall clock time and date at job start Mon Mar 30 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37103 * 119.99432 * 2 1 4 4 H 1.08004 * 119.99195 * 151.03603 * 3 2 1 5 5 C 1.38945 * 120.00248 * 331.03489 * 3 2 1 6 6 N 1.31408 * 119.99862 * 159.16436 * 5 3 2 7 7 Si 1.86800 * 119.99948 * 339.16472 * 5 3 2 8 8 H 1.48498 * 109.47143 * 84.77993 * 7 5 3 9 9 H 1.48499 * 109.46972 * 204.77914 * 7 5 3 10 10 H 1.48500 * 109.47354 * 324.78101 * 7 5 3 11 11 C 1.34768 * 120.00344 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00150 * 183.35815 * 11 2 1 13 13 C 1.50708 * 120.00239 * 3.35340 * 11 2 1 14 14 C 1.52995 * 109.47240 * 183.39998 * 13 11 2 15 15 C 1.52991 * 109.47303 * 300.00443 * 14 13 11 16 16 C 1.53002 * 109.47125 * 299.99497 * 15 14 13 17 17 C 1.53000 * 109.46983 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46871 * 60.00503 * 17 16 15 19 19 C 1.53005 * 109.47025 * 180.02562 * 17 16 15 20 20 C 1.52993 * 109.47402 * 300.00229 * 17 16 15 21 21 C 1.53006 * 109.46566 * 60.00398 * 16 15 14 22 22 C 1.52991 * 109.47074 * 299.99633 * 21 16 15 23 23 H 1.09002 * 109.46833 * 214.13564 * 1 2 3 24 24 H 1.08994 * 109.47146 * 334.13509 * 1 2 3 25 25 H 1.08997 * 109.46615 * 94.13726 * 1 2 3 26 26 H 0.97005 * 120.00173 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47151 * 303.40654 * 13 11 2 28 28 H 1.09000 * 109.47076 * 179.97438 * 14 13 11 29 29 H 1.09006 * 109.46812 * 60.00337 * 14 13 11 30 30 H 1.08998 * 109.47332 * 60.00241 * 15 14 13 31 31 H 1.09002 * 109.46978 * 180.02562 * 15 14 13 32 32 H 1.08998 * 109.47623 * 300.00566 * 16 15 14 33 33 H 1.09002 * 109.47449 * 60.00479 * 18 17 16 34 34 H 1.09005 * 109.46605 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47523 * 299.99219 * 18 17 16 36 36 H 1.09002 * 109.47170 * 60.00091 * 19 17 16 37 37 H 1.08992 * 109.47267 * 180.02562 * 19 17 16 38 38 H 1.09000 * 109.46653 * 300.00156 * 19 17 16 39 39 H 1.09006 * 109.47070 * 60.00060 * 20 17 16 40 40 H 1.09001 * 109.47171 * 179.97438 * 20 17 16 41 41 H 1.09002 * 109.47296 * 300.00216 * 20 17 16 42 42 H 1.09006 * 109.46758 * 179.97438 * 21 16 15 43 43 H 1.09000 * 109.47359 * 60.00194 * 21 16 15 44 44 H 1.09000 * 109.47485 * 300.00483 * 22 21 16 45 45 H 1.09002 * 109.46978 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1292 1.2459 0.4530 5 6 1.5860 2.3154 -0.5827 6 7 2.0128 3.5119 -0.2465 7 14 0.2205 2.1311 -1.8440 8 1 -1.0845 2.0075 -1.1462 9 1 0.1984 3.3244 -2.7275 10 1 0.4621 0.9147 -2.6609 11 6 2.1390 -1.1671 -0.0005 12 8 3.3503 -1.1680 0.0610 13 6 1.3875 -2.4712 -0.0774 14 6 2.3749 -3.6355 0.0237 15 6 3.3773 -3.5557 -1.1293 16 6 2.6296 -3.6356 -2.4617 17 6 3.6322 -3.5565 -3.6147 18 6 4.6190 -4.7212 -3.5131 19 6 2.8843 -3.6358 -4.9472 20 6 4.3956 -2.2329 -3.5369 21 6 1.6422 -2.4712 -2.5629 22 6 0.6397 -2.5509 -1.4099 23 1 -0.3633 -0.8506 0.5767 24 1 -0.3633 0.9247 0.4483 25 1 -0.3632 -0.0741 -1.0250 26 1 1.6186 4.2995 -0.6531 27 1 0.6733 -2.5280 0.7440 28 1 1.8313 -4.5787 -0.0315 29 1 2.9076 -3.5786 0.9730 30 1 3.9209 -2.6126 -1.0736 31 1 4.0805 -4.3855 -1.0574 32 1 2.0860 -4.5787 -2.5174 33 1 4.0752 -5.6642 -3.5687 34 1 5.3330 -4.6651 -4.3349 35 1 5.1518 -4.6644 -2.5640 36 1 2.1815 -2.8057 -5.0193 37 1 3.5986 -3.5799 -5.7686 38 1 2.3402 -4.5786 -5.0028 39 1 4.9284 -2.1761 -2.5876 40 1 5.1102 -2.1768 -4.3580 41 1 3.6925 -1.4031 -3.6092 42 1 1.1098 -2.5278 -3.5124 43 1 2.1857 -1.5280 -2.5073 44 1 0.0962 -3.4941 -1.4656 45 1 -0.0639 -1.7216 -1.4823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051037479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:39 Heat of formation + Delta-G solvation = -50.220917 kcal Electronic energy + Delta-G solvation = -22822.512663 eV Core-core repulsion = 19839.464335 eV Total energy + Delta-G solvation = -2983.048328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17106 -38.06735 -35.22216 -34.61785 -32.03625 -30.42266 -29.50675 -27.11933 -27.02273 -26.47019 -25.19221 -22.73523 -21.99437 -20.63885 -18.29439 -17.80220 -17.03506 -16.13493 -15.37675 -15.27378 -14.72546 -14.26307 -13.85729 -13.76298 -13.60671 -13.26592 -13.03401 -12.67921 -12.50526 -12.23621 -12.14557 -12.05971 -11.81156 -11.48992 -11.44666 -11.32035 -11.16771 -10.82746 -10.78936 -10.65102 -10.59398 -10.36950 -10.19746 -9.95115 -9.78248 -9.49487 -9.43450 -9.07753 -8.18065 -7.75796 -6.35158 -3.87204 3.05562 3.23431 3.25709 3.77905 4.17606 4.49689 4.87908 4.93230 5.02355 5.07538 5.20294 5.31018 5.41585 5.56644 5.67128 5.70018 5.75971 5.77850 5.86631 5.90515 5.91989 5.94295 5.95496 5.98287 6.02391 6.13136 6.15993 6.19022 6.25086 6.27466 6.33711 6.39155 6.41746 6.54749 6.60336 6.68701 6.71917 6.79410 6.83860 7.21636 7.57252 8.31095 8.56230 9.02146 9.39584 9.84606 10.77717 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.007182 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.510740 B = 3897.681202 C = 4205.535580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.470 5.470 3 C -0.313 4.313 4 H 0.110 0.890 5 C 0.055 3.945 6 N -0.869 5.869 7 Si 0.878 3.122 8 H -0.276 1.276 9 H -0.292 1.292 10 H -0.267 1.267 11 C 0.473 3.527 12 O -0.561 6.561 13 C -0.106 4.106 14 C -0.090 4.090 15 C -0.134 4.134 16 C -0.069 4.069 17 C -0.064 4.064 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.120 4.120 22 C -0.115 4.115 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.273 0.727 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -14.468 -5.743 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.191 5.191 3 C -0.440 4.440 4 H 0.127 0.873 5 C -0.149 4.149 6 N -0.507 5.507 7 Si 0.706 3.294 8 H -0.202 1.202 9 H -0.219 1.219 10 H -0.192 1.192 11 C 0.262 3.738 12 O -0.443 6.443 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.170 4.170 16 C -0.087 4.087 17 C -0.064 4.064 18 C -0.197 4.197 19 C -0.199 4.199 20 C -0.202 4.202 21 C -0.158 4.158 22 C -0.153 4.153 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.641 -14.228 -5.726 15.563 hybrid contribution -1.030 0.145 -0.732 1.272 sum -3.671 -14.083 -6.458 15.921 Atomic orbital electron populations 1.22129 0.83744 1.02686 0.99993 1.43709 1.03739 1.05988 1.65693 1.19156 1.04419 0.83779 1.36647 0.87291 1.25261 0.97745 0.94799 0.97140 1.69749 1.42840 0.97592 1.40502 0.87112 0.81899 0.77740 0.82693 1.20209 1.21852 1.19203 1.20023 0.87918 0.84454 0.81417 1.90438 1.14003 1.86626 1.53224 1.21279 0.98115 0.95077 0.98342 1.21211 0.96542 0.95545 0.99484 1.22026 0.97936 1.04584 0.92502 1.21106 0.95322 0.97718 0.94549 1.20523 0.95360 0.95714 0.94809 1.21901 0.98738 0.97411 1.01666 1.21923 1.00026 1.01405 0.96530 1.21964 0.99957 0.96482 1.01764 1.21714 0.96951 0.99862 0.97236 1.21633 0.97895 1.01744 0.93987 0.92156 0.90607 0.93977 0.91708 0.90363 0.92918 0.91986 0.87268 0.93120 0.92380 0.93241 0.93276 0.92191 0.92413 0.93211 0.93185 0.91647 0.93659 0.92235 0.92464 0.90676 0.92012 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 6.60 59.85 0.40 1.55 16 2 N -0.47 -11.27 2.74 -122.19 -0.34 -11.60 16 3 C -0.31 -8.85 9.56 -14.93 -0.14 -8.99 16 4 H 0.11 3.49 7.70 -52.48 -0.40 3.08 16 5 C 0.06 1.53 5.20 -17.47 -0.09 1.44 16 6 N -0.87 -25.36 13.96 55.50 0.77 -24.58 16 7 Si 0.88 20.52 24.10 -169.99 -4.10 16.42 16 8 H -0.28 -5.95 6.55 56.52 0.37 -5.58 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.27 -6.15 6.95 56.52 0.39 -5.75 16 11 C 0.47 10.65 5.50 -10.99 -0.06 10.59 16 12 O -0.56 -14.37 13.29 5.55 0.07 -14.30 16 13 C -0.11 -1.83 2.22 -91.77 -0.20 -2.03 16 14 C -0.09 -1.42 5.11 -26.74 -0.14 -1.56 16 15 C -0.13 -2.15 4.20 -26.73 -0.11 -2.26 16 16 C -0.07 -0.99 1.55 -90.62 -0.14 -1.13 16 17 C -0.06 -0.86 0.57 -154.51 -0.09 -0.95 16 18 C -0.14 -1.66 8.12 37.16 0.30 -1.36 16 19 C -0.14 -1.71 8.12 37.16 0.30 -1.41 16 20 C -0.14 -2.24 7.77 37.15 0.29 -1.95 16 21 C -0.12 -1.95 4.28 -26.73 -0.11 -2.06 16 22 C -0.11 -1.78 5.25 -26.73 -0.14 -1.92 16 23 H 0.06 0.97 6.52 -51.93 -0.34 0.64 16 24 H 0.08 1.56 6.33 -51.93 -0.33 1.23 16 25 H 0.04 0.81 4.09 -51.93 -0.21 0.59 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.08 1.21 7.14 -51.93 -0.37 0.84 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 30 H 0.11 2.16 3.68 -51.93 -0.19 1.97 16 31 H 0.05 0.74 6.43 -51.93 -0.33 0.40 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 36 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.11 6.43 -51.93 -0.33 0.78 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.03 6.43 -51.93 -0.33 0.69 16 42 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 43 H 0.07 1.49 5.51 -51.93 -0.29 1.21 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.09 5.02 -51.93 -0.26 0.83 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -30.12 314.89 -6.16 -36.28 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.37 Total: 5.07 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 0.06 Total: -12.04 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.44 Total: -36.18 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.07 Total: -14.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.10 Total: 16.42 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.12 -6.16 -36.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051037479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.945 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds