Wall clock time and date at job start Mon Mar 30 2020 07:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46438 * 2 1 4 4 C 1.52996 * 109.47369 * 240.00570 * 2 1 3 5 5 C 1.52997 * 109.47225 * 119.99978 * 2 1 3 6 6 H 1.09003 * 108.56663 * 302.06728 * 5 2 1 7 7 C 1.51796 * 108.61344 * 184.26690 * 5 2 1 8 8 C 1.53060 * 110.74817 * 172.06609 * 7 5 2 9 9 C 1.51434 * 108.67593 * 84.85605 * 8 7 5 10 10 O 1.21274 * 119.89470 * 108.94232 * 9 8 7 11 11 N 1.33374 * 120.20547 * 289.17380 * 9 8 7 12 12 C 1.46499 * 119.77944 * 179.49161 * 11 9 8 13 13 C 1.53004 * 109.47198 * 269.72682 * 12 11 9 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.47188 * 120.43716 * 359.21397 * 11 9 8 23 23 C 1.51772 * 108.61475 * 60.00649 * 5 2 1 24 24 H 1.09002 * 109.47357 * 299.99545 * 1 2 3 25 25 H 1.08998 * 109.47478 * 60.00214 * 1 2 3 26 26 H 1.09004 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46645 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47408 * 299.99575 * 3 2 1 29 29 H 1.08999 * 109.47274 * 60.00652 * 3 2 1 30 30 H 1.09004 * 109.46991 * 299.99620 * 4 2 1 31 31 H 1.08998 * 109.47460 * 59.99205 * 4 2 1 32 32 H 1.08997 * 109.47396 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.22140 * 292.39284 * 7 5 2 34 34 H 1.08997 * 109.22236 * 51.73998 * 7 5 2 35 35 H 1.08994 * 109.63524 * 204.62474 * 8 7 5 36 36 H 1.09003 * 109.63019 * 325.01830 * 8 7 5 37 37 H 1.09000 * 109.47602 * 149.72233 * 12 11 9 38 38 H 1.09007 * 109.47337 * 29.71947 * 12 11 9 39 39 H 1.09000 * 109.47211 * 59.99311 * 13 12 11 40 40 H 1.09007 * 109.46376 * 299.99853 * 13 12 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.60565 * 191.98680 * 22 11 9 43 43 H 1.09008 * 109.60275 * 312.31121 * 22 11 9 44 44 H 1.08995 * 109.20081 * 67.75215 * 23 5 2 45 45 H 1.09007 * 109.15984 * 308.44080 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6385 -0.2179 2.1288 7 6 3.5541 -0.6178 1.2842 8 6 4.1035 -1.1504 2.6098 9 6 4.2602 -2.6527 2.5012 10 8 5.3683 -3.1421 2.4421 11 7 3.1834 -3.4388 2.4656 12 6 3.3456 -4.8902 2.3492 13 6 3.3613 -5.2846 0.8710 14 6 3.5276 -6.7777 0.7512 15 1 3.6139 -7.3844 1.6405 16 6 3.5758 -7.3682 -0.4937 17 7 3.4710 -6.6293 -1.5766 18 14 3.7897 -9.2179 -0.6423 19 1 3.8831 -9.8160 0.7137 20 1 2.6241 -9.7951 -1.3591 21 1 5.0323 -9.5133 -1.3997 22 6 1.8334 -2.8584 2.5487 23 6 1.5237 -2.1483 1.2295 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7207 -1.2495 33 1 3.9726 -1.1994 0.4627 34 1 3.8452 0.4262 1.1686 35 1 5.0727 -0.6955 2.8137 36 1 3.4099 -0.9114 3.4160 37 1 2.5163 -5.3899 2.8498 38 1 4.2847 -5.1894 2.8150 39 1 4.1906 -4.7849 0.3703 40 1 2.4223 -4.9854 0.4052 41 1 3.5053 -7.0447 -2.4524 42 1 1.1043 -3.6509 2.7174 43 1 1.7927 -2.1431 3.3703 44 1 1.9979 -2.6898 0.4110 45 1 0.4448 -2.1362 1.0737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079282880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:50 Heat of formation + Delta-G solvation = -66.528474 kcal Electronic energy + Delta-G solvation = -21994.827172 eV Core-core repulsion = 19011.071696 eV Total energy + Delta-G solvation = -2983.755476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31311 -38.33710 -35.48418 -33.72703 -32.63536 -30.84338 -29.59428 -27.49876 -27.25754 -26.27960 -24.53013 -23.33829 -21.25167 -21.00309 -18.45140 -18.24649 -16.62149 -16.42762 -15.90902 -15.15303 -14.59561 -14.37347 -14.22137 -13.81275 -13.67255 -13.56508 -13.29492 -12.71303 -12.43413 -12.30931 -12.18731 -11.91118 -11.84531 -11.73019 -11.59794 -11.33752 -11.23965 -11.02699 -10.91895 -10.77300 -10.63661 -10.23617 -10.17971 -10.04524 -9.79974 -9.73448 -9.25385 -8.95555 -8.32710 -7.93838 -5.98224 -4.00640 3.23186 3.32873 3.40262 3.44436 3.65577 4.49022 4.58099 4.69136 4.70309 4.85895 5.08725 5.23010 5.26538 5.38169 5.44449 5.45795 5.53017 5.56135 5.61274 5.73821 5.75605 5.76903 5.85306 5.90754 5.95633 5.97084 6.06791 6.08231 6.18005 6.22920 6.29465 6.35021 6.40754 6.50086 6.59854 6.69537 6.92843 7.04086 7.67698 7.79176 8.03410 8.10334 8.41045 8.81617 9.06535 9.63000 11.13196 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.005421 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.709143 B = 5163.877132 C = 5850.740874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.147 4.147 5 C -0.072 4.072 6 H 0.065 0.935 7 C -0.114 4.114 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.552 6.552 11 N -0.601 5.601 12 C 0.114 3.886 13 C 0.016 3.984 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.114 3.886 23 C -0.144 4.144 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 16.342 5.640 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.204 4.204 5 C -0.091 4.091 6 H 0.083 0.917 7 C -0.151 4.151 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.430 6.430 11 N -0.333 5.333 12 C -0.007 4.007 13 C -0.022 4.022 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.009 4.009 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.713 16.059 5.427 18.232 hybrid contribution -0.001 -1.008 -0.301 1.052 sum -6.713 15.051 5.126 17.259 Atomic orbital electron populations 1.21958 0.94814 1.02087 1.01223 1.20581 0.95354 0.95045 0.95563 1.21981 1.01324 0.95565 1.01280 1.21980 1.01421 1.00875 0.96166 1.20787 0.94941 0.95931 0.97418 0.91660 1.21441 0.95309 1.01603 0.96757 1.21973 1.03255 0.93037 0.99423 1.20367 0.84398 0.89111 0.76544 1.90703 1.25266 1.76431 1.50634 1.48036 1.05577 1.08500 1.71199 1.21902 1.01149 0.76365 1.01294 1.19361 0.97426 0.96144 0.89249 1.21162 1.49983 0.92343 0.92296 0.92574 1.24982 0.95259 0.98111 0.95892 1.69979 1.50553 1.35127 0.97584 0.86532 0.77661 0.85649 0.78129 1.19699 1.21059 1.21006 1.21716 0.84234 0.97904 0.97076 1.22060 1.01723 0.95344 0.99089 0.92939 0.92999 0.91977 0.92157 0.92988 0.92915 0.91731 0.93205 0.92393 0.90980 0.90614 0.89237 0.90010 0.92065 0.91084 0.96181 0.96568 0.93109 0.89880 0.91587 0.89669 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.07 -0.67 0.56 -154.51 -0.09 -0.76 16 3 C -0.14 -1.29 8.00 37.16 0.30 -1.00 16 4 C -0.15 -1.81 7.82 37.16 0.29 -1.52 16 5 C -0.07 -0.79 1.09 -91.86 -0.10 -0.89 16 6 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 7 C -0.11 -1.40 4.26 -27.31 -0.12 -1.51 16 8 C -0.14 -1.83 5.56 -27.49 -0.15 -1.98 16 9 C 0.51 9.58 6.81 -11.25 -0.08 9.51 16 10 O -0.55 -13.13 16.59 5.56 0.09 -13.03 16 11 N -0.60 -10.88 2.45 -173.22 -0.42 -11.30 16 12 C 0.11 2.47 5.33 -4.04 -0.02 2.45 16 13 C 0.02 0.43 5.30 -27.88 -0.15 0.28 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.11 1.54 5.90 -3.67 -0.02 1.52 16 23 C -0.14 -1.87 4.29 -27.36 -0.12 -1.98 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.61 6.18 -51.93 -0.32 0.29 16 27 H 0.06 0.55 6.11 -51.92 -0.32 0.23 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.91 6.54 -51.93 -0.34 0.57 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.76 6.64 -51.93 -0.34 0.41 16 33 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 34 H 0.08 0.78 5.76 -51.93 -0.30 0.48 16 35 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.08 0.89 6.79 -51.93 -0.35 0.54 16 37 H 0.06 1.21 7.85 -51.93 -0.41 0.80 16 38 H 0.07 1.67 7.37 -51.93 -0.38 1.29 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 1.07 7.77 -51.93 -0.40 0.67 16 43 H 0.07 0.72 6.73 -51.92 -0.35 0.37 16 44 H 0.08 1.43 6.41 -51.93 -0.33 1.10 16 45 H 0.08 0.86 5.87 -51.93 -0.30 0.56 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -33.14 336.15 -7.73 -40.87 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.81 Total: -1.55 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.36 Total: -10.58 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.31 Total: -37.76 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.14 -7.73 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079282880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.662 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds