Wall clock time and date at job start Mon Mar 30 2020 07:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46438 * 2 1 4 4 C 1.52996 * 109.47369 * 240.00570 * 2 1 3 5 5 C 1.52997 * 109.47225 * 119.99978 * 2 1 3 6 6 H 1.09003 * 108.56663 * 302.06728 * 5 2 1 7 7 C 1.51796 * 108.61344 * 184.26690 * 5 2 1 8 8 C 1.53060 * 110.74817 * 172.06609 * 7 5 2 9 9 C 1.51434 * 108.67593 * 84.85605 * 8 7 5 10 10 O 1.21274 * 119.89470 * 108.94232 * 9 8 7 11 11 N 1.33374 * 120.20547 * 289.17380 * 9 8 7 12 12 C 1.46499 * 119.77944 * 179.49161 * 11 9 8 13 13 C 1.53004 * 109.47198 * 269.72682 * 12 11 9 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.47188 * 120.43716 * 359.21397 * 11 9 8 23 23 C 1.51772 * 108.61475 * 60.00649 * 5 2 1 24 24 H 1.09002 * 109.47357 * 299.99545 * 1 2 3 25 25 H 1.08998 * 109.47478 * 60.00214 * 1 2 3 26 26 H 1.09004 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46645 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47408 * 299.99575 * 3 2 1 29 29 H 1.08999 * 109.47274 * 60.00652 * 3 2 1 30 30 H 1.09004 * 109.46991 * 299.99620 * 4 2 1 31 31 H 1.08998 * 109.47460 * 59.99205 * 4 2 1 32 32 H 1.08997 * 109.47396 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.22140 * 292.39284 * 7 5 2 34 34 H 1.08997 * 109.22236 * 51.73998 * 7 5 2 35 35 H 1.08994 * 109.63524 * 204.62474 * 8 7 5 36 36 H 1.09003 * 109.63019 * 325.01830 * 8 7 5 37 37 H 1.09000 * 109.47602 * 149.72233 * 12 11 9 38 38 H 1.09007 * 109.47337 * 29.71947 * 12 11 9 39 39 H 1.09000 * 109.47211 * 59.99311 * 13 12 11 40 40 H 1.09007 * 109.46376 * 299.99853 * 13 12 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.60565 * 191.98680 * 22 11 9 43 43 H 1.09008 * 109.60275 * 312.31121 * 22 11 9 44 44 H 1.08995 * 109.20081 * 67.75215 * 23 5 2 45 45 H 1.09007 * 109.15984 * 308.44080 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6385 -0.2179 2.1288 7 6 3.5541 -0.6178 1.2842 8 6 4.1035 -1.1504 2.6098 9 6 4.2602 -2.6527 2.5012 10 8 5.3683 -3.1421 2.4421 11 7 3.1834 -3.4388 2.4656 12 6 3.3456 -4.8902 2.3492 13 6 3.3613 -5.2846 0.8710 14 6 3.5276 -6.7777 0.7512 15 1 3.6139 -7.3844 1.6405 16 6 3.5758 -7.3682 -0.4937 17 7 3.4710 -6.6293 -1.5766 18 14 3.7897 -9.2179 -0.6423 19 1 3.8831 -9.8160 0.7137 20 1 2.6241 -9.7951 -1.3591 21 1 5.0323 -9.5133 -1.3997 22 6 1.8334 -2.8584 2.5487 23 6 1.5237 -2.1483 1.2295 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7207 -1.2495 33 1 3.9726 -1.1994 0.4627 34 1 3.8452 0.4262 1.1686 35 1 5.0727 -0.6955 2.8137 36 1 3.4099 -0.9114 3.4160 37 1 2.5163 -5.3899 2.8498 38 1 4.2847 -5.1894 2.8150 39 1 4.1906 -4.7849 0.3703 40 1 2.4223 -4.9854 0.4052 41 1 3.5053 -7.0447 -2.4524 42 1 1.1043 -3.6509 2.7174 43 1 1.7927 -2.1431 3.3703 44 1 1.9979 -2.6898 0.4110 45 1 0.4448 -2.1362 1.0737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079282880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:49 Heat of formation + Delta-G solvation = -86.541599 kcal Electronic energy + Delta-G solvation = -21995.695007 eV Core-core repulsion = 19011.071696 eV Total energy + Delta-G solvation = -2984.623310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57567 -39.51294 -37.04321 -35.45545 -34.22444 -32.16854 -31.33713 -28.36958 -28.18848 -27.62649 -26.24779 -24.65893 -22.91644 -22.23425 -19.79868 -19.29926 -18.55377 -17.93681 -17.26845 -16.64310 -16.37076 -15.60555 -15.23296 -15.06414 -14.77549 -14.69192 -14.62895 -14.36138 -14.26896 -13.49874 -13.44904 -13.32063 -12.97476 -12.88812 -12.68901 -12.68114 -12.60934 -12.47186 -12.27484 -11.99722 -11.91399 -11.83386 -11.74503 -11.40414 -11.12946 -11.00054 -10.90797 -10.60977 -10.57746 -9.52891 -8.24240 -6.36913 1.36428 1.38416 1.51507 1.75688 2.21659 2.40952 3.08959 3.57465 3.67742 3.80884 3.83600 4.19248 4.24524 4.32131 4.33616 4.40928 4.51262 4.53362 4.57666 4.68605 4.79854 4.85273 4.87866 4.91852 4.93289 4.94632 5.00006 5.06259 5.13000 5.17643 5.19221 5.28580 5.30919 5.34624 5.40797 5.50299 5.53670 5.62280 5.66108 5.69037 5.83525 6.16942 6.63168 6.79103 7.31772 7.34383 8.87895 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.005421 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.709143 B = 5163.877132 C = 5850.740874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.069 4.069 6 H 0.103 0.897 7 C -0.109 4.109 8 C -0.122 4.122 9 C 0.495 3.505 10 O -0.615 6.615 11 N -0.602 5.602 12 C 0.127 3.873 13 C 0.033 3.967 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.282 1.282 22 C 0.107 3.893 23 C -0.139 4.139 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.047 0.953 39 H -0.033 1.033 40 H 0.000 1.000 41 H 0.263 0.737 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.033 0.967 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 17.787 7.498 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.087 4.087 6 H 0.121 0.879 7 C -0.147 4.147 8 C -0.162 4.162 9 C 0.285 3.715 10 O -0.499 6.499 11 N -0.332 5.332 12 C 0.004 3.996 13 C -0.005 4.005 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.208 1.208 22 C -0.014 4.014 23 C -0.177 4.177 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.066 0.934 39 H -0.015 1.015 40 H 0.019 0.981 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.720 17.531 7.299 20.896 hybrid contribution 0.607 -1.446 -0.958 1.837 sum -8.113 16.085 6.341 19.099 Atomic orbital electron populations 1.21934 0.93590 1.01810 1.02498 1.20560 0.96252 0.95654 0.93674 1.21952 1.01086 0.94251 1.02553 1.21973 1.00259 0.99740 0.98421 1.20805 0.93836 0.94777 0.99312 0.87851 1.21454 0.96267 1.02338 0.94605 1.21992 1.04980 0.88035 1.01210 1.21524 0.83441 0.91612 0.74958 1.90664 1.27739 1.77998 1.53452 1.48128 1.07765 1.06935 1.70322 1.21469 1.00998 0.79508 0.97605 1.19115 0.94239 0.95095 0.92061 1.21611 1.50267 0.93496 0.92928 0.91835 1.26005 0.94516 1.03804 0.95378 1.70128 1.51199 1.37610 0.98280 0.85339 0.77834 0.78799 0.78706 1.18309 1.19724 1.20781 1.22121 0.81547 0.99042 0.98705 1.22003 1.02545 0.96181 0.97017 0.90732 0.92692 0.93013 0.92542 0.92638 0.90775 0.94634 0.92367 0.94187 0.95287 0.87726 0.88629 0.85824 0.89447 0.93437 1.01493 0.98118 0.92792 0.89147 0.87143 0.94767 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.12 71.98 0.58 -1.65 16 2 C -0.06 -1.14 0.56 -52.18 -0.03 -1.17 16 3 C -0.14 -2.07 8.00 71.98 0.58 -1.49 16 4 C -0.15 -3.76 7.82 71.98 0.56 -3.20 16 5 C -0.07 -1.34 1.09 -11.59 -0.01 -1.35 16 6 H 0.10 1.34 7.88 -2.39 -0.02 1.32 16 7 C -0.11 -2.54 4.26 30.22 0.13 -2.41 16 8 C -0.12 -3.03 5.56 30.10 0.17 -2.86 16 9 C 0.49 19.03 6.81 88.11 0.60 19.63 16 10 O -0.62 -31.00 16.59 -3.01 -0.05 -31.05 16 11 N -0.60 -22.01 2.45 -821.12 -2.01 -24.02 16 12 C 0.13 5.73 5.33 86.38 0.46 6.19 16 13 C 0.03 1.86 5.30 29.85 0.16 2.02 16 14 C -0.54 -32.50 9.11 25.60 0.23 -32.26 16 15 H 0.06 3.61 7.74 -2.91 -0.02 3.58 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -59.05 13.29 21.45 0.28 -58.76 16 18 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 C 0.11 2.66 5.90 86.24 0.51 3.17 16 23 C -0.14 -3.49 4.29 30.19 0.13 -3.36 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.92 6.18 -2.39 -0.01 0.91 16 27 H 0.06 0.87 6.11 -2.38 -0.01 0.85 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 1.09 6.54 -2.39 -0.02 1.07 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.13 6.64 -2.39 -0.02 1.12 16 33 H 0.03 0.93 6.55 -2.38 -0.02 0.91 16 34 H 0.10 1.86 5.76 -2.39 -0.01 1.85 16 35 H 0.10 2.28 8.13 -2.39 -0.02 2.26 16 36 H 0.12 2.05 6.79 -2.39 -0.02 2.04 16 37 H 0.09 3.45 7.85 -2.39 -0.02 3.43 16 38 H 0.05 2.35 7.37 -2.38 -0.02 2.34 16 39 H -0.03 -2.22 8.14 -2.39 -0.02 -2.23 16 40 H 0.00 0.03 7.90 -2.38 -0.02 0.01 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.09 2.13 7.77 -2.39 -0.02 2.11 16 43 H 0.11 1.83 6.73 -2.38 -0.02 1.82 16 44 H 0.03 1.22 6.41 -2.39 -0.02 1.20 16 45 H 0.10 2.01 5.87 -2.38 -0.01 2.00 16 Total: -1.00 -78.92 336.15 5.72 -73.20 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.95 Total: 11.04 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.53 Total: -18.23 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.73 Total: -82.78 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.92 5.72 -73.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079282880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.345 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds