Wall clock time and date at job start Mon Mar 30 2020 07:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08996 * 108.57381 * 180.02562 * 5 2 1 7 7 C 1.51791 * 108.61709 * 297.94130 * 5 2 1 8 8 C 1.53100 * 110.72056 * 188.05892 * 7 5 2 9 9 C 1.51417 * 108.39371 * 274.90100 * 8 7 5 10 10 O 1.21280 * 119.89626 * 251.23763 * 9 8 7 11 11 N 1.33377 * 120.21779 * 71.21100 * 9 8 7 12 12 C 1.46501 * 119.78802 * 180.30728 * 11 9 8 13 13 C 1.52994 * 109.46960 * 270.02624 * 12 11 9 14 14 C 1.50706 * 109.47109 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99768 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00265 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46949 * 89.99970 * 18 16 14 20 20 H 1.48493 * 109.47527 * 210.00337 * 18 16 14 21 21 H 1.48504 * 109.46789 * 330.00270 * 18 16 14 22 22 C 1.47194 * 120.42302 * 0.33657 * 11 9 8 23 23 C 1.51784 * 108.61314 * 62.06322 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.09006 * 109.22320 * 308.24484 * 7 5 2 34 34 H 1.08994 * 109.22757 * 67.59283 * 7 5 2 35 35 H 1.09006 * 109.68013 * 155.23405 * 8 7 5 36 36 H 1.09001 * 109.85338 * 34.67307 * 8 7 5 37 37 H 1.09001 * 109.46943 * 30.02312 * 12 11 9 38 38 H 1.09000 * 109.46827 * 150.02385 * 12 11 9 39 39 H 1.09001 * 109.47528 * 299.99834 * 13 12 11 40 40 H 1.09000 * 109.47546 * 60.00202 * 13 12 11 41 41 H 0.97006 * 119.99479 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.60477 * 168.26423 * 22 11 9 43 43 H 1.08998 * 109.60975 * 47.76944 * 22 11 9 44 44 H 1.08997 * 109.19737 * 292.23805 * 23 5 2 45 45 H 1.09000 * 109.19241 * 51.56978 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1298 -0.7131 -1.2342 7 6 1.5661 -2.1626 -1.2040 8 6 2.2120 -2.9806 -2.3254 9 6 1.3853 -2.8053 -3.5818 10 8 0.7130 -3.7256 -3.9963 11 7 1.3937 -1.6418 -4.2340 12 6 0.5851 -1.4804 -5.4448 13 6 1.4121 -1.8820 -6.6677 14 6 0.5805 -1.7154 -7.9134 15 1 -0.4361 -1.3583 -7.8402 16 6 1.1178 -2.0178 -9.1466 17 7 0.3922 -1.8719 -10.2337 18 14 2.8769 -2.6334 -9.2735 19 1 2.8905 -4.1154 -9.1809 20 1 3.4557 -2.2134 -10.5749 21 1 3.6828 -2.0607 -8.1654 22 6 2.2107 -0.5193 -3.7452 23 6 1.5662 0.0386 -2.4747 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 1.8362 -2.5992 -0.2424 34 1 0.4823 -2.1878 -1.3170 35 1 2.2341 -4.0339 -2.0455 36 1 3.2279 -2.6276 -2.5032 37 1 -0.2983 -2.1156 -5.3791 38 1 0.2775 -0.4390 -5.5402 39 1 2.2956 -1.2469 -6.7335 40 1 1.7196 -2.9234 -6.5724 41 1 0.7701 -2.0850 -11.1013 42 1 2.2538 0.2602 -4.5059 43 1 3.2178 -0.8704 -3.5205 44 1 0.4827 -0.0494 -2.5542 45 1 1.8336 1.0900 -2.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079282886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:54 Heat of formation + Delta-G solvation = -63.120573 kcal Electronic energy + Delta-G solvation = -21675.833730 eV Core-core repulsion = 18692.226032 eV Total energy + Delta-G solvation = -2983.607699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48648 -38.53104 -35.62030 -33.90290 -32.65151 -31.10819 -29.96412 -27.70017 -27.54114 -26.55035 -24.65622 -23.39448 -21.55830 -20.73413 -18.58351 -18.36719 -16.97087 -16.75552 -16.08342 -15.22856 -14.80146 -14.52729 -14.22841 -13.90133 -13.86208 -13.80137 -13.46093 -12.97623 -12.65188 -12.51235 -12.43160 -12.10498 -12.06597 -11.99315 -11.79071 -11.51830 -11.43378 -11.26107 -11.10228 -10.91746 -10.49386 -10.38140 -10.32876 -10.21438 -10.00302 -9.78752 -9.32113 -9.08939 -8.51898 -8.10984 -6.03086 -4.01245 3.11409 3.33660 3.40006 3.43457 3.50590 4.36459 4.47322 4.47888 4.49429 4.68654 4.92348 5.03287 5.05759 5.25394 5.30098 5.31633 5.35892 5.36943 5.42362 5.49669 5.57643 5.63392 5.65322 5.71866 5.74321 5.78139 5.84822 5.87315 5.94364 6.06326 6.08833 6.09932 6.14139 6.27830 6.35625 6.43536 6.70293 6.83398 7.29533 7.40872 7.78934 7.95058 8.52190 8.68965 9.00631 9.59345 11.10213 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.004401 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.203236 B = 6361.173785 C = 6562.137643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.076 4.076 6 H 0.069 0.931 7 C -0.111 4.111 8 C -0.139 4.139 9 C 0.508 3.492 10 O -0.549 6.549 11 N -0.604 5.604 12 C 0.124 3.876 13 C -0.022 4.022 14 C -0.518 4.518 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C 0.110 3.890 23 C -0.140 4.140 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.263 0.737 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 6.111 23.847 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.202 4.202 5 C -0.095 4.095 6 H 0.088 0.912 7 C -0.148 4.148 8 C -0.179 4.179 9 C 0.295 3.705 10 O -0.428 6.428 11 N -0.336 5.336 12 C 0.003 3.997 13 C -0.061 4.061 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.014 4.014 23 C -0.178 4.178 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.607 5.625 23.426 24.736 hybrid contribution 0.989 -0.271 -0.268 1.059 sum 6.596 5.354 23.158 24.668 Atomic orbital electron populations 1.21978 0.94645 1.02050 1.01676 1.20586 0.95785 0.95361 0.94848 1.21970 1.00893 0.95528 1.01810 1.21976 1.00886 1.00501 0.96855 1.20830 1.00345 0.94197 0.94100 0.91238 1.21424 1.01207 0.94315 0.97868 1.22005 0.99688 1.02503 0.93722 1.20403 0.82717 0.82331 0.85034 1.90719 1.43529 1.40108 1.68404 1.48079 1.45933 1.12224 1.27361 1.21657 0.94445 1.01003 0.82592 1.19859 0.96151 0.96529 0.93530 1.20988 1.00619 1.44774 0.89305 0.90877 1.24974 0.97638 0.94910 0.95706 1.69915 1.36851 1.49242 0.98138 0.86760 0.85542 0.79633 0.77215 1.20247 1.21386 1.19226 1.21764 0.94078 0.89553 0.95982 1.22041 1.02007 0.99972 0.93801 0.92246 0.93056 0.92396 0.92950 0.92709 0.92017 0.92166 0.92722 0.92923 0.90568 0.91305 0.89037 0.89725 0.90484 0.91360 0.96734 0.96572 0.92716 0.89433 0.91233 0.90811 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.83 37.16 0.29 -0.92 16 2 C -0.07 -0.50 0.56 -154.51 -0.09 -0.59 16 3 C -0.14 -1.01 8.06 37.15 0.30 -0.71 16 4 C -0.15 -1.00 8.06 37.16 0.30 -0.70 16 5 C -0.08 -0.66 1.10 -91.85 -0.10 -0.76 16 6 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 7 C -0.11 -1.11 4.23 -27.29 -0.12 -1.22 16 8 C -0.14 -1.73 5.57 -27.48 -0.15 -1.88 16 9 C 0.51 9.05 6.79 -11.26 -0.08 8.97 16 10 O -0.55 -12.51 16.60 5.56 0.09 -12.41 16 11 N -0.60 -10.32 2.45 -173.23 -0.43 -10.74 16 12 C 0.12 2.59 5.26 -4.04 -0.02 2.57 16 13 C -0.02 -0.56 4.36 -27.88 -0.12 -0.68 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 18 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 22 C 0.11 1.37 5.88 -3.67 -0.02 1.34 16 23 C -0.14 -1.39 4.31 -27.35 -0.12 -1.50 16 24 H 0.06 0.52 6.58 -51.93 -0.34 0.18 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.51 6.58 -51.93 -0.34 0.17 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 6.14 -51.93 -0.32 0.12 16 30 H 0.06 0.42 6.14 -51.93 -0.32 0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 5.82 -51.93 -0.30 0.33 16 34 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 35 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 36 H 0.08 0.91 6.78 -51.93 -0.35 0.56 16 37 H 0.08 1.77 7.38 -51.93 -0.38 1.38 16 38 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 43 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 44 H 0.07 0.84 6.69 -51.93 -0.35 0.49 16 45 H 0.08 0.66 5.81 -51.93 -0.30 0.36 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -33.83 333.25 -7.38 -41.21 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.82 Total: -3.75 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.36 Total: -9.62 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.35 Total: -38.31 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.83 -7.38 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079282886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds